Wall clock time and date at job start Tue Mar 31 2020 06:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34892 * 117.00428 * 2 1 4 4 O 1.21618 * 119.99991 * 0.02562 * 3 2 1 5 5 C 1.46497 * 120.00018 * 179.97438 * 3 2 1 6 6 C 1.37986 * 126.26443 * 179.97438 * 5 3 2 7 7 C 1.39792 * 106.96989 * 180.02562 * 6 5 3 8 8 C 1.35488 * 107.84268 * 359.97438 * 7 6 5 9 9 C 1.50705 * 125.50824 * 179.97438 * 8 7 6 10 10 N 1.46905 * 109.46900 * 95.38297 * 9 8 7 11 11 C 1.46907 * 110.99824 * 287.94231 * 10 9 8 12 12 C 1.50697 * 109.46985 * 170.00327 * 11 10 9 13 13 H 1.08004 * 120.00032 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00001 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00372 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99771 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47519 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47440 * 119.99982 * 16 14 12 19 19 H 1.48506 * 109.46920 * 239.99601 * 16 14 12 20 20 C 1.46899 * 110.99783 * 163.99031 * 10 9 8 21 21 C 1.52996 * 109.46810 * 294.07330 * 20 10 9 22 22 C 1.53001 * 109.47275 * 54.07501 * 20 10 9 23 23 N 1.34955 * 108.98264 * 0.26489 * 8 7 6 24 24 C 1.46504 * 125.63199 * 179.73632 * 23 8 7 25 25 H 1.08999 * 109.46863 * 300.00541 * 1 2 3 26 26 H 1.09004 * 109.46922 * 59.99564 * 1 2 3 27 27 H 1.08994 * 109.47314 * 180.02562 * 1 2 3 28 28 H 1.07999 * 126.51523 * 0.03467 * 6 5 3 29 29 H 1.08004 * 126.08213 * 180.02562 * 7 6 5 30 30 H 1.09000 * 109.47180 * 335.38704 * 9 8 7 31 31 H 1.08993 * 109.47144 * 215.38148 * 9 8 7 32 32 H 1.08995 * 109.47091 * 289.99971 * 11 10 9 33 33 H 1.09001 * 109.46917 * 49.99976 * 11 10 9 34 34 H 0.96998 * 120.00393 * 179.97438 * 15 14 12 35 35 H 1.09005 * 109.46810 * 174.07515 * 20 10 9 36 36 H 1.09003 * 109.47420 * 65.50934 * 21 20 10 37 37 H 1.08998 * 109.46855 * 185.50458 * 21 20 10 38 38 H 1.09000 * 109.47556 * 305.50534 * 21 20 10 39 39 H 1.08997 * 109.46826 * 64.69021 * 22 20 10 40 40 H 1.09001 * 109.46944 * 184.69122 * 22 20 10 41 41 H 1.09001 * 109.46970 * 304.69008 * 22 20 10 42 42 H 1.09002 * 109.46878 * 95.52523 * 24 23 8 43 43 H 1.08999 * 109.47186 * 215.51811 * 24 23 8 44 44 H 1.08994 * 109.47419 * 335.52615 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0645 1.2019 0.0000 4 8 1.4022 2.2219 0.0005 5 6 3.5275 1.2784 0.0006 6 6 4.2844 2.4321 0.0001 7 6 5.6261 2.0398 0.0004 8 6 5.6626 0.6854 0.0015 9 6 6.9126 -0.1565 0.0015 10 7 7.2468 -0.5367 1.3806 11 6 7.7547 0.6163 2.1361 12 6 7.8538 0.2561 3.5960 13 1 7.5678 -0.7306 3.9294 14 6 8.3088 1.1863 4.5063 15 7 8.6567 2.3879 4.1006 16 14 8.4310 0.7399 6.3161 17 1 7.9822 -0.6622 6.5115 18 1 9.8397 0.8764 6.7657 19 1 7.5676 1.6507 7.1100 20 6 8.2098 -1.6458 1.4022 21 6 7.5542 -2.9016 0.8244 22 6 9.4329 -1.2758 0.5608 23 7 4.3988 0.2122 -0.0039 24 6 4.0170 -1.2022 -0.0101 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.9112 3.4456 -0.0002 29 1 6.4816 2.6991 0.0005 30 1 7.7357 0.4150 -0.4274 31 1 6.7455 -1.0549 -0.5926 32 1 8.7410 0.8901 1.7617 33 1 7.0735 1.4586 2.0151 34 1 8.9764 3.0425 4.7410 35 1 8.5200 -1.8376 2.4295 36 1 7.3326 -2.7430 -0.2310 37 1 8.2336 -3.7474 0.9299 38 1 6.6294 -3.1092 1.3627 39 1 9.9477 -0.4317 1.0197 40 1 10.1093 -2.1289 0.5082 41 1 9.1130 -1.0031 -0.4449 42 1 3.8238 -1.5308 1.0110 43 1 3.1166 -1.3329 -0.6103 44 1 4.8266 -1.7952 -0.4356 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602446412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:21 Heat of formation + Delta-G solvation = -51.012605 kcal Electronic energy + Delta-G solvation = -24633.975974 eV Core-core repulsion = 21165.870551 eV Total energy + Delta-G solvation = -3468.105423 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.57480 -40.97828 -39.15317 -37.52140 -34.84540 -33.85856 -33.04198 -31.26144 -29.38656 -28.15449 -27.92056 -27.36125 -26.22217 -24.16315 -23.32034 -21.43003 -20.86802 -19.96870 -18.88897 -18.26504 -17.96825 -17.54238 -17.17791 -16.59337 -16.15474 -15.66607 -15.43006 -15.20587 -14.82727 -14.52569 -14.35509 -14.29160 -14.02118 -13.91494 -13.73432 -13.23799 -13.20108 -13.06625 -12.94781 -12.77808 -12.65867 -12.61672 -12.50614 -12.26736 -11.97792 -11.84485 -11.83071 -11.65295 -11.39624 -11.11888 -10.55174 -9.67855 -9.19997 -8.87686 -8.14443 -6.21631 0.16353 1.39226 1.41139 1.52435 1.55190 1.63150 1.96332 2.11817 2.42579 3.19095 3.42885 3.71745 3.93222 3.97880 4.11121 4.23702 4.31382 4.34110 4.40840 4.47467 4.51392 4.59009 4.61146 4.67731 4.69857 4.81191 4.85681 4.92298 5.05899 5.08465 5.13021 5.16863 5.27856 5.32430 5.37427 5.53991 5.61323 5.72198 5.78064 6.00787 6.15602 6.23491 6.48040 6.66356 6.71032 6.95388 7.46524 8.96304 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013780 B = 0.004849 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.503547 B = 5772.731889 C = 6623.142756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.358 6.358 3 C 0.546 3.454 4 O -0.535 6.535 5 C -0.078 4.078 6 C -0.107 4.107 7 C -0.224 4.224 8 C 0.091 3.909 9 C 0.113 3.887 10 N -0.528 5.528 11 C 0.206 3.794 12 C -0.514 4.514 13 H 0.058 0.942 14 C 0.004 3.996 15 N -0.932 5.932 16 Si 0.957 3.043 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.285 1.285 20 C 0.075 3.925 21 C -0.132 4.132 22 C -0.174 4.174 23 N -0.399 5.399 24 C 0.069 3.931 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.138 0.862 28 H 0.150 0.850 29 H 0.136 0.864 30 H 0.052 0.948 31 H 0.109 0.891 32 H -0.029 1.029 33 H 0.011 0.989 34 H 0.261 0.739 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.027 0.973 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.105 0.895 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.615 -11.354 -11.912 19.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.275 6.275 3 C 0.394 3.606 4 O -0.426 6.426 5 C -0.188 4.188 6 C -0.133 4.133 7 C -0.248 4.248 8 C -0.030 4.030 9 C -0.015 4.015 10 N -0.253 5.253 11 C 0.080 3.920 12 C -0.552 4.552 13 H 0.077 0.923 14 C -0.194 4.194 15 N -0.573 5.573 16 Si 0.783 3.217 17 H -0.188 1.188 18 H -0.205 1.205 19 H -0.211 1.211 20 C -0.033 4.033 21 C -0.189 4.189 22 C -0.233 4.233 23 N -0.072 5.072 24 C -0.071 4.071 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.156 0.844 28 H 0.168 0.832 29 H 0.154 0.846 30 H 0.070 0.930 31 H 0.127 0.873 32 H -0.012 1.012 33 H 0.029 0.971 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.123 0.877 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.397 -11.496 -11.622 19.373 hybrid contribution 0.868 1.137 0.958 1.722 sum -9.528 -10.359 -10.664 17.658 Atomic orbital electron populations 1.23603 0.74091 1.06007 1.02614 1.86601 1.25511 1.31084 1.84273 1.19717 0.86706 0.81954 0.72212 1.90848 1.66035 1.36859 1.48901 1.19314 0.86905 0.88462 1.24078 1.21389 0.92474 0.97234 1.02237 1.20795 0.96909 0.94303 1.12792 1.20571 0.85887 0.93874 1.02642 1.20711 0.90688 0.98072 0.92050 1.62262 1.43513 1.09053 1.10431 1.19403 0.91863 0.88596 0.92143 1.21485 1.41757 0.98707 0.93290 0.92339 1.25772 0.95526 0.94901 1.03225 1.70081 1.45878 1.05500 1.35793 0.85516 0.77593 0.78497 0.80105 1.18763 1.20494 1.21118 1.21687 0.90468 0.91616 0.99531 1.21814 1.00943 0.95427 1.00757 1.22359 0.99349 1.01473 1.00120 1.43863 1.04402 1.07305 1.51651 1.22411 1.03676 0.76434 1.04578 0.92303 0.91566 0.84365 0.83238 0.84638 0.92994 0.87334 1.01160 0.97089 0.93046 0.91917 0.91488 0.91036 0.92409 0.95399 0.90767 0.91693 0.90480 0.87672 0.87535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.57 113.37 1.20 1.69 16 2 O -0.36 -8.73 8.13 -58.07 -0.47 -9.20 16 3 C 0.55 17.38 7.92 69.97 0.55 17.94 16 4 O -0.54 -19.33 16.68 19.45 0.32 -19.00 16 5 C -0.08 -2.66 6.89 40.32 0.28 -2.38 16 6 C -0.11 -3.87 10.66 22.59 0.24 -3.63 16 7 C -0.22 -8.40 9.56 22.01 0.21 -8.19 16 8 C 0.09 3.15 5.81 41.44 0.24 3.40 16 9 C 0.11 3.59 3.80 85.56 0.33 3.92 16 10 N -0.53 -20.46 4.39 -880.04 -3.87 -24.32 16 11 C 0.21 10.49 4.45 85.55 0.38 10.87 16 12 C -0.51 -28.61 8.37 25.60 0.21 -28.40 16 13 H 0.06 3.21 7.18 -2.91 -0.02 3.19 16 14 C 0.00 0.20 5.46 84.65 0.46 0.67 16 15 N -0.93 -56.30 13.29 21.45 0.28 -56.02 16 16 Si 0.96 44.76 29.54 68.60 2.03 46.78 16 17 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 20 C 0.08 2.51 2.78 44.91 0.12 2.63 16 21 C -0.13 -3.08 9.02 71.98 0.65 -2.43 16 22 C -0.17 -5.33 8.54 71.98 0.62 -4.71 16 23 N -0.40 -12.38 3.15 -520.20 -1.64 -14.01 16 24 C 0.07 1.51 10.22 127.77 1.31 2.82 16 25 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.15 5.08 8.06 -2.91 -0.02 5.06 16 29 H 0.14 5.16 8.06 -2.91 -0.02 5.14 16 30 H 0.05 1.71 7.04 -2.39 -0.02 1.69 16 31 H 0.11 2.64 4.96 -2.39 -0.01 2.62 16 32 H -0.03 -1.61 6.49 -2.39 -0.02 -1.63 16 33 H 0.01 0.62 6.37 -2.39 -0.02 0.61 16 34 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 35 H 0.06 2.50 6.65 -2.38 -0.02 2.48 16 36 H 0.07 1.27 6.51 -2.39 -0.02 1.25 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.03 1.04 6.77 -2.39 -0.02 1.02 16 40 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.06 1.73 6.42 -2.39 -0.02 1.72 16 42 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.10 1.92 6.51 -2.39 -0.02 1.90 16 44 H 0.11 1.86 6.88 -2.39 -0.02 1.84 16 Total: -1.00 -70.94 353.74 4.45 -66.49 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.99 Total: 15.10 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 6.80 Total: -5.81 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -5.22 Total: -94.35 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.15 Total: -28.20 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -70.94 4.45 -66.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602446412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.474 kcal (2) G-P(sol) polarization free energy of solvation -70.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds