Wall clock time and date at job start Tue Mar 31 2020 06:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46973 * 2 1 4 4 H 1.09002 * 109.47843 * 305.00122 * 3 2 1 5 5 C 1.50700 * 109.47289 * 185.00349 * 3 2 1 6 6 H 1.08004 * 120.00164 * 240.00164 * 5 3 2 7 7 C 1.37881 * 120.00076 * 59.99923 * 5 3 2 8 8 N 1.31511 * 119.99799 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00168 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47248 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46971 * 120.00044 * 9 7 5 12 12 H 1.48498 * 109.47303 * 240.00222 * 9 7 5 13 13 N 1.46497 * 109.47261 * 65.00227 * 3 2 1 14 14 C 1.34775 * 120.00688 * 275.00102 * 13 3 2 15 15 O 1.21291 * 119.99307 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00585 * 179.97438 * 14 13 3 17 17 H 1.09002 * 110.85744 * 300.70226 * 16 14 13 18 18 C 1.54632 * 110.96961 * 64.49235 * 16 14 13 19 19 C 1.51276 * 104.19453 * 142.95275 * 18 16 14 20 20 O 1.21284 * 124.94139 * 163.78235 * 19 18 16 21 21 N 1.34418 * 110.12105 * 343.74623 * 19 18 16 22 22 C 1.46497 * 124.35219 * 179.56786 * 21 19 18 23 23 C 1.53009 * 109.46776 * 89.97710 * 22 21 19 24 24 C 1.52991 * 117.49876 * 243.62120 * 23 22 21 25 25 C 1.52994 * 117.49643 * 174.99686 * 23 22 21 26 26 C 1.46767 * 111.29675 * 359.59228 * 21 19 18 27 27 H 1.08997 * 109.47380 * 59.99759 * 1 2 3 28 28 H 1.09002 * 109.46902 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46962 * 299.99779 * 1 2 3 30 30 H 1.09005 * 109.46894 * 240.00747 * 2 1 3 31 31 H 1.08997 * 109.47380 * 120.00241 * 2 1 3 32 32 H 0.96997 * 120.00539 * 179.97438 * 8 7 5 33 33 H 0.97008 * 119.99754 * 94.99652 * 13 3 2 34 34 H 1.09004 * 110.48489 * 261.63400 * 18 16 14 35 35 H 1.09003 * 110.48700 * 24.14193 * 18 16 14 36 36 H 1.08999 * 109.47206 * 209.97121 * 22 21 19 37 37 H 1.08999 * 109.47240 * 329.98428 * 22 21 19 38 38 H 1.09003 * 115.54591 * 29.33088 * 23 22 21 39 39 H 1.09008 * 117.50003 * 0.02562 * 24 23 22 40 40 H 1.09003 * 117.50113 * 145.02018 * 24 23 22 41 41 H 1.08997 * 117.49940 * 214.97668 * 25 23 22 42 42 H 1.09005 * 117.50182 * 359.97438 * 25 23 22 43 43 H 1.08997 * 110.24641 * 258.01045 * 26 21 19 44 44 H 1.09003 * 110.24346 * 136.01145 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1433 0.8785 -1.2281 8 7 3.4061 0.3376 -2.1734 9 14 6.0049 0.8802 -1.3814 10 1 6.5988 1.5443 -0.1934 11 1 6.4961 -0.5189 -1.4630 12 1 6.3998 1.6159 -2.6094 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3671 15 8 -0.3393 2.6326 0.4343 16 6 0.0364 3.3376 2.6550 17 1 0.0717 2.6348 3.4875 18 6 0.9269 4.5707 2.9337 19 6 -0.0183 5.5796 3.5479 20 8 0.3239 6.5678 4.1620 21 7 -1.2926 5.2219 3.3133 22 6 -2.4611 5.9741 3.7771 23 6 -2.8581 7.0039 2.7174 24 6 -2.7629 8.4825 3.0987 25 6 -4.1324 7.8143 2.9624 26 6 -1.3629 3.9806 2.5333 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.8291 -0.0602 -2.9504 33 1 2.2721 2.1231 1.9978 34 1 1.7219 4.3165 3.6348 35 1 1.3475 4.9553 2.0046 36 1 -3.2911 5.2881 3.9460 37 1 -2.2175 6.4862 4.7080 38 1 -2.6239 6.7332 1.6878 39 1 -2.4169 8.7217 4.1043 40 1 -2.4658 9.1850 2.3199 41 1 -4.7365 8.0771 2.0941 42 1 -4.6883 7.6135 3.8783 43 1 -1.5865 4.2029 1.4900 44 1 -2.1206 3.3164 2.9490 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701195826.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:38 Heat of formation + Delta-G solvation = -54.417185 kcal Electronic energy + Delta-G solvation = -24060.313090 eV Core-core repulsion = 20592.060034 eV Total energy + Delta-G solvation = -3468.253056 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.72761 -38.93143 -37.53281 -36.19112 -35.04063 -32.90745 -32.20172 -30.80927 -27.76669 -27.42287 -26.68523 -23.60771 -22.65740 -22.46652 -21.13936 -20.18359 -19.41776 -19.36271 -17.60628 -17.01942 -16.30848 -15.56629 -15.46004 -15.30392 -15.10353 -14.61092 -14.33671 -14.11154 -13.69696 -13.54289 -13.06565 -12.90556 -12.74084 -12.50623 -12.10929 -11.83282 -11.72598 -11.58201 -11.38747 -11.30806 -11.25721 -10.98796 -10.87680 -10.67541 -10.35748 -10.23993 -10.22769 -9.84715 -9.68583 -9.12635 -9.07455 -8.76930 -8.54903 -7.91369 -6.16789 -4.26291 2.56252 2.83528 3.20225 3.21667 3.29868 3.32129 3.60660 3.87859 4.29073 4.34147 4.46722 4.51745 4.70467 4.77245 4.93226 4.99650 5.10782 5.15082 5.28438 5.36103 5.42500 5.48606 5.52247 5.64493 5.70254 5.79097 5.90089 5.97022 5.99915 6.33752 6.39461 6.45410 6.59797 6.97553 7.03459 7.13282 7.29677 7.36695 7.56462 7.67064 7.84258 8.12854 8.13479 8.57175 8.71687 9.02114 9.41270 10.88499 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023613 B = 0.003373 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.524598 B = 8300.139127 C = 8831.624693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.702 5.702 14 C 0.512 3.488 15 O -0.544 6.544 16 C -0.126 4.126 17 H 0.111 0.889 18 C -0.144 4.144 19 C 0.522 3.478 20 O -0.533 6.533 21 N -0.617 5.617 22 C 0.159 3.841 23 C -0.174 4.174 24 C -0.173 4.173 25 C -0.176 4.176 26 C 0.118 3.882 27 H 0.049 0.951 28 H 0.022 0.978 29 H 0.038 0.962 30 H 0.099 0.901 31 H 0.031 0.969 32 H 0.264 0.736 33 H 0.390 0.610 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.069 7.552 11.289 17.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.349 5.349 14 C 0.296 3.704 15 O -0.423 6.423 16 C -0.148 4.148 17 H 0.129 0.871 18 C -0.185 4.185 19 C 0.310 3.690 20 O -0.410 6.410 21 N -0.351 5.351 22 C 0.037 3.963 23 C -0.193 4.193 24 C -0.210 4.210 25 C -0.213 4.213 26 C -0.005 4.005 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.057 0.943 30 H 0.117 0.883 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.222 0.778 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.126 0.874 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.463 7.965 10.762 17.626 hybrid contribution 1.274 -0.149 0.118 1.288 sum -10.189 7.815 10.881 16.831 Atomic orbital electron populations 1.21839 0.98340 0.98086 1.01163 1.21941 0.92611 0.99788 1.02366 1.18818 0.94292 0.89193 0.80863 0.93225 1.21265 0.90677 1.39036 1.06327 0.91981 1.24881 0.98616 0.94770 0.95388 1.69895 1.35071 1.37620 1.09319 0.86412 0.84858 0.77785 0.78170 1.19702 1.20887 1.20885 1.46487 1.14348 1.55417 1.18682 1.19802 0.83098 0.79431 0.88104 1.90689 1.51433 1.59994 1.40168 1.22298 0.95778 0.97482 0.99232 0.87103 1.22336 0.98215 0.93967 1.03955 1.20844 0.83583 0.85786 0.78767 1.90704 1.80184 1.28313 1.41816 1.48288 1.06117 1.25950 1.54758 1.20911 0.86888 0.92837 0.95688 1.22786 1.02324 0.93239 1.00951 1.23009 0.99873 0.95124 1.03007 1.22942 0.90715 1.04365 1.03320 1.22000 0.96394 0.84327 0.97730 0.93139 0.95841 0.94324 0.88266 0.94988 0.92590 0.77804 0.87318 0.87030 0.89872 0.89942 0.87386 0.88592 0.88942 0.88694 0.88710 0.88912 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.52 37.16 0.32 -2.54 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.09 16 3 C 0.27 6.36 2.24 -69.09 -0.15 6.21 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.53 -13.48 8.73 -34.44 -0.30 -13.78 16 6 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -23.98 11.29 55.43 0.63 -23.35 16 9 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 10 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.70 -13.04 5.01 -54.94 -0.28 -13.31 16 14 C 0.51 8.75 5.63 -10.99 -0.06 8.69 16 15 O -0.54 -11.16 12.68 5.55 0.07 -11.09 16 16 C -0.13 -1.55 3.54 -90.14 -0.32 -1.87 16 17 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 18 C -0.14 -1.78 6.40 -26.74 -0.17 -1.95 16 19 C 0.52 7.29 8.02 -10.86 -0.09 7.21 16 20 O -0.53 -9.16 17.60 5.55 0.10 -9.06 16 21 N -0.62 -7.30 2.93 -172.41 -0.51 -7.81 16 22 C 0.16 1.58 6.21 -4.04 -0.03 1.56 16 23 C -0.17 -1.74 6.01 -90.62 -0.54 -2.29 16 24 C -0.17 -1.67 10.18 -26.74 -0.27 -1.94 16 25 C -0.18 -1.42 10.25 -26.73 -0.27 -1.69 16 26 C 0.12 1.38 6.69 -3.12 -0.02 1.36 16 27 H 0.05 1.13 7.85 -51.93 -0.41 0.72 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.04 0.76 5.65 -51.93 -0.29 0.47 16 30 H 0.10 2.57 5.95 -51.93 -0.31 2.26 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 33 H 0.39 6.26 8.54 -40.82 -0.35 5.91 16 34 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.11 1.50 7.89 -51.93 -0.41 1.09 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.86 7.66 -51.93 -0.40 0.46 16 38 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.10 0.94 8.03 -51.92 -0.42 0.52 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.09 1.25 7.01 -51.93 -0.36 0.89 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 357.15 15.07 5.38 5.38 Total: -1.00 -30.26 357.15 -8.89 -39.15 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -7.11 Total: 7.50 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.16 Total: -2.51 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: -0.15 Total: -44.47 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: 0.17 Total: -20.14 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.26 -8.89 -39.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701195826.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.270 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds