Wall clock time and date at job start Tue Mar 31 2020 06:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46973 * 2 1 4 4 H 1.09002 * 109.47843 * 305.00122 * 3 2 1 5 5 C 1.50700 * 109.47289 * 185.00349 * 3 2 1 6 6 H 1.08004 * 120.00164 * 240.00164 * 5 3 2 7 7 C 1.37881 * 120.00076 * 59.99923 * 5 3 2 8 8 N 1.31511 * 119.99799 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00168 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47248 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46971 * 120.00044 * 9 7 5 12 12 H 1.48498 * 109.47303 * 240.00222 * 9 7 5 13 13 N 1.46497 * 109.47261 * 65.00227 * 3 2 1 14 14 C 1.34775 * 120.00688 * 275.00102 * 13 3 2 15 15 O 1.21291 * 119.99307 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00585 * 179.97438 * 14 13 3 17 17 H 1.09002 * 110.85744 * 300.70226 * 16 14 13 18 18 C 1.54632 * 110.96961 * 64.49235 * 16 14 13 19 19 C 1.51276 * 104.19453 * 142.95275 * 18 16 14 20 20 O 1.21284 * 124.94139 * 163.78235 * 19 18 16 21 21 N 1.34418 * 110.12105 * 343.74623 * 19 18 16 22 22 C 1.46497 * 124.35219 * 179.56786 * 21 19 18 23 23 C 1.53009 * 109.46776 * 89.97710 * 22 21 19 24 24 C 1.52991 * 117.49876 * 243.62120 * 23 22 21 25 25 C 1.52994 * 117.49643 * 174.99686 * 23 22 21 26 26 C 1.46767 * 111.29675 * 359.59228 * 21 19 18 27 27 H 1.08997 * 109.47380 * 59.99759 * 1 2 3 28 28 H 1.09002 * 109.46902 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46962 * 299.99779 * 1 2 3 30 30 H 1.09005 * 109.46894 * 240.00747 * 2 1 3 31 31 H 1.08997 * 109.47380 * 120.00241 * 2 1 3 32 32 H 0.96997 * 120.00539 * 179.97438 * 8 7 5 33 33 H 0.97008 * 119.99754 * 94.99652 * 13 3 2 34 34 H 1.09004 * 110.48489 * 261.63400 * 18 16 14 35 35 H 1.09003 * 110.48700 * 24.14193 * 18 16 14 36 36 H 1.08999 * 109.47206 * 209.97121 * 22 21 19 37 37 H 1.08999 * 109.47240 * 329.98428 * 22 21 19 38 38 H 1.09003 * 115.54591 * 29.33088 * 23 22 21 39 39 H 1.09008 * 117.50003 * 0.02562 * 24 23 22 40 40 H 1.09003 * 117.50113 * 145.02018 * 24 23 22 41 41 H 1.08997 * 117.49940 * 214.97668 * 25 23 22 42 42 H 1.09005 * 117.50182 * 359.97438 * 25 23 22 43 43 H 1.08997 * 110.24641 * 258.01045 * 26 21 19 44 44 H 1.09003 * 110.24346 * 136.01145 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1433 0.8785 -1.2281 8 7 3.4061 0.3376 -2.1734 9 14 6.0049 0.8802 -1.3814 10 1 6.5988 1.5443 -0.1934 11 1 6.4961 -0.5189 -1.4630 12 1 6.3998 1.6159 -2.6094 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3671 15 8 -0.3393 2.6326 0.4343 16 6 0.0364 3.3376 2.6550 17 1 0.0717 2.6348 3.4875 18 6 0.9269 4.5707 2.9337 19 6 -0.0183 5.5796 3.5479 20 8 0.3239 6.5678 4.1620 21 7 -1.2926 5.2219 3.3133 22 6 -2.4611 5.9741 3.7771 23 6 -2.8581 7.0039 2.7174 24 6 -2.7629 8.4825 3.0987 25 6 -4.1324 7.8143 2.9624 26 6 -1.3629 3.9806 2.5333 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.8291 -0.0602 -2.9504 33 1 2.2721 2.1231 1.9978 34 1 1.7219 4.3165 3.6348 35 1 1.3475 4.9553 2.0046 36 1 -3.2911 5.2881 3.9460 37 1 -2.2175 6.4862 4.7080 38 1 -2.6239 6.7332 1.6878 39 1 -2.4169 8.7217 4.1043 40 1 -2.4658 9.1850 2.3199 41 1 -4.7365 8.0771 2.0941 42 1 -4.6883 7.6135 3.8783 43 1 -1.5865 4.2029 1.4900 44 1 -2.1206 3.3164 2.9490 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701195826.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:37 Heat of formation + Delta-G solvation = -73.000547 kcal Electronic energy + Delta-G solvation = -24061.118925 eV Core-core repulsion = 20592.060034 eV Total energy + Delta-G solvation = -3469.058891 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.83773 -40.32596 -38.34841 -37.43548 -36.66358 -34.36966 -33.67562 -32.42518 -29.15877 -28.62695 -27.89546 -25.22319 -24.01483 -23.23591 -21.97117 -21.75830 -20.94748 -20.42557 -19.05036 -18.00376 -17.86755 -17.17207 -16.71028 -16.38461 -16.23973 -16.01894 -15.70745 -15.17557 -14.94025 -14.69252 -14.54673 -14.17932 -14.03151 -13.69226 -13.43228 -13.31933 -13.12172 -12.85710 -12.71625 -12.66780 -12.42178 -12.38665 -12.30833 -12.11545 -11.98979 -11.53043 -11.46197 -11.10441 -10.99704 -10.85392 -10.58874 -10.45282 -9.77074 -9.57175 -8.14024 -6.30145 1.44494 1.47082 1.47807 1.57456 1.81706 1.91503 2.37601 2.62400 2.87054 3.16014 3.27702 3.44293 3.75147 3.90638 3.91567 3.96017 4.08521 4.28597 4.32450 4.51129 4.53715 4.56082 4.64246 4.65339 4.70899 4.76453 4.81384 4.84322 4.98493 4.99737 5.12831 5.18489 5.23326 5.33079 5.49461 5.53874 5.61559 5.66908 5.85429 5.96580 6.03591 6.22192 6.79186 7.02007 7.08546 7.37114 7.61517 8.91104 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023613 B = 0.003373 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.524598 B = 8300.139127 C = 8831.624693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.279 3.721 4 H 0.000 1.000 5 C -0.545 4.545 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.964 3.036 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.287 1.287 13 N -0.700 5.700 14 C 0.512 3.488 15 O -0.580 6.580 16 C -0.109 4.109 17 H 0.149 0.851 18 C -0.140 4.140 19 C 0.517 3.483 20 O -0.571 6.571 21 N -0.610 5.610 22 C 0.155 3.845 23 C -0.188 4.188 24 C -0.188 4.188 25 C -0.152 4.152 26 C 0.121 3.879 27 H 0.024 0.976 28 H 0.043 0.957 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.042 0.958 32 H 0.263 0.737 33 H 0.405 0.595 34 H 0.131 0.869 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.114 0.886 43 H 0.071 0.929 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.556 7.259 13.493 19.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.175 3.825 4 H 0.018 0.982 5 C -0.583 4.583 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.790 3.210 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.213 1.213 13 N -0.349 5.349 14 C 0.298 3.702 15 O -0.460 6.460 16 C -0.130 4.130 17 H 0.166 0.834 18 C -0.180 4.180 19 C 0.306 3.694 20 O -0.451 6.451 21 N -0.342 5.342 22 C 0.034 3.966 23 C -0.208 4.208 24 C -0.225 4.225 25 C -0.189 4.189 26 C -0.002 4.002 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.240 0.760 34 H 0.149 0.851 35 H 0.115 0.885 36 H 0.130 0.870 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.121 0.879 42 H 0.132 0.868 43 H 0.090 0.910 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.972 7.675 12.998 19.265 hybrid contribution 1.361 -0.011 -0.612 1.492 sum -10.610 7.664 12.386 18.020 Atomic orbital electron populations 1.21681 0.96701 0.99158 1.00509 1.21786 0.94001 0.99102 1.01251 1.18347 0.93379 0.89247 0.81510 0.98246 1.21637 0.91714 1.38477 1.06471 0.91012 1.25705 1.02847 0.94604 0.95233 1.70043 1.36790 1.38579 1.09860 0.85411 0.79782 0.77706 0.78121 1.18469 1.20627 1.21328 1.46221 1.15484 1.55625 1.17551 1.20521 0.81912 0.78455 0.89297 1.90687 1.52331 1.61022 1.42001 1.22210 0.95939 0.97661 0.97210 0.83380 1.22323 0.98581 0.93396 1.03717 1.21059 0.84457 0.85486 0.78395 1.90686 1.80840 1.29838 1.43688 1.48363 1.06131 1.25890 1.53793 1.21114 0.86941 0.93275 0.95253 1.22747 1.04421 0.93465 1.00120 1.23041 1.01782 0.94951 1.02693 1.23030 0.89811 1.01704 1.04368 1.22005 0.96736 0.84559 0.96859 0.95630 0.93809 0.93047 0.91388 0.93921 0.92739 0.76022 0.85052 0.88498 0.87015 0.90297 0.89085 0.88902 0.89443 0.87901 0.86820 0.91043 0.87033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.10 8.52 71.98 0.61 -4.48 16 2 C -0.12 -5.66 5.45 30.59 0.17 -5.49 16 3 C 0.28 13.32 2.24 44.24 0.10 13.42 16 4 H 0.00 -0.02 7.58 -2.39 -0.02 -0.04 16 5 C -0.54 -27.48 8.73 25.60 0.22 -27.25 16 6 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 7 C 0.02 0.85 5.29 84.66 0.45 1.29 16 8 N -0.91 -50.98 11.29 21.45 0.24 -50.74 16 9 Si 0.96 41.22 29.54 68.60 2.03 43.24 16 10 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 11 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 12 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 13 N -0.70 -25.37 5.01 -446.11 -2.23 -27.60 16 14 C 0.51 16.94 5.63 87.66 0.49 17.43 16 15 O -0.58 -23.86 12.68 -3.06 -0.04 -23.90 16 16 C -0.11 -2.39 3.54 -10.48 -0.04 -2.42 16 17 H 0.15 2.28 8.14 -2.39 -0.02 2.26 16 18 C -0.14 -3.20 6.40 30.59 0.20 -3.00 16 19 C 0.52 13.79 8.02 87.90 0.71 14.49 16 20 O -0.57 -19.30 17.60 -3.04 -0.05 -19.35 16 21 N -0.61 -13.30 2.93 -817.97 -2.40 -15.69 16 22 C 0.16 2.78 6.21 86.38 0.54 3.32 16 23 C -0.19 -3.59 6.01 -10.80 -0.06 -3.66 16 24 C -0.19 -3.52 10.18 30.59 0.31 -3.21 16 25 C -0.15 -2.15 10.25 30.59 0.31 -1.83 16 26 C 0.12 2.54 6.69 86.83 0.58 3.12 16 27 H 0.02 1.15 7.85 -2.39 -0.02 1.13 16 28 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.05 1.96 5.65 -2.39 -0.01 1.95 16 30 H 0.07 3.60 5.95 -2.38 -0.01 3.59 16 31 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 33 H 0.40 12.19 8.54 -92.70 -0.79 11.40 16 34 H 0.13 2.41 8.14 -2.38 -0.02 2.39 16 35 H 0.10 2.55 7.89 -2.39 -0.02 2.53 16 36 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 1.51 7.66 -2.39 -0.02 1.49 16 38 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.09 1.78 8.03 -2.38 -0.02 1.77 16 40 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 43 H 0.07 1.87 7.01 -2.39 -0.02 1.85 16 44 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -67.75 357.15 2.33 -65.41 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.20 Total: 26.89 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 4.58 Total: 1.73 kcal Atomic # 7 Polarization: -89.64 SS G_CDS: -4.39 Total: -94.03 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -0.09 Total: -43.25 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Total: -67.75 2.33 -65.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701195826.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.586 kcal (2) G-P(sol) polarization free energy of solvation -67.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds