Wall clock time and date at job start Tue Mar 31 2020 08:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42903 * 109.47018 * 285.67617 * 3 2 1 5 5 C 1.42904 * 113.99957 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47210 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47193 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99638 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00068 * 180.02562 * 7 6 5 10 10 C 1.46503 * 120.00084 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47208 * 179.97438 * 10 9 7 12 12 C 1.53352 * 109.41800 * 295.12674 * 11 10 9 13 13 C 1.53190 * 109.15070 * 178.67720 * 12 11 10 14 14 N 1.46925 * 108.89356 * 54.57285 * 13 12 11 15 15 C 1.36935 * 120.62758 * 126.30089 * 14 13 12 16 16 H 1.08001 * 120.00088 * 332.62829 * 15 14 13 17 17 C 1.38817 * 119.99782 * 152.62208 * 15 14 13 18 18 N 1.31618 * 119.99923 * 159.36242 * 17 15 14 19 19 Si 1.86801 * 120.00195 * 339.36341 * 17 15 14 20 20 H 1.48501 * 109.47054 * 92.89675 * 19 17 15 21 21 H 1.48497 * 109.47324 * 212.90179 * 19 17 15 22 22 H 1.48501 * 109.46722 * 332.89954 * 19 17 15 23 23 C 1.46926 * 118.73822 * 306.31916 * 14 13 12 24 24 C 1.53037 * 109.46053 * 174.99519 * 11 10 9 25 25 H 4.38442 * 5.44373 * 179.97438 * 4 1 2 26 26 H 1.08999 * 109.47093 * 165.67990 * 3 2 1 27 27 H 1.09000 * 109.47323 * 45.67212 * 3 2 1 28 28 H 1.09005 * 109.47352 * 59.99686 * 5 4 3 29 29 H 1.08997 * 109.46986 * 300.00295 * 5 4 3 30 30 H 1.08996 * 109.47061 * 59.99753 * 6 5 4 31 31 H 1.09008 * 109.46669 * 299.99829 * 6 5 4 32 32 H 0.97004 * 120.00152 * 359.97438 * 9 7 6 33 33 H 1.08996 * 109.47010 * 59.99318 * 10 9 7 34 34 H 1.08996 * 109.46600 * 299.99324 * 10 9 7 35 35 H 1.09008 * 109.45887 * 55.02318 * 11 10 9 36 36 H 1.09004 * 109.68561 * 58.70472 * 12 11 10 37 37 H 1.09004 * 109.47287 * 298.51133 * 12 11 10 38 38 H 1.09004 * 109.58215 * 294.71811 * 13 12 11 39 39 H 1.08997 * 109.58828 * 174.43980 * 13 12 11 40 40 H 0.96999 * 119.99917 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.58248 * 173.39705 * 23 14 13 42 42 H 1.08994 * 109.58922 * 293.68210 * 23 14 13 43 43 H 1.09003 * 109.49698 * 61.43697 * 24 11 10 44 44 H 1.08994 * 109.52761 * 301.35110 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1225 -0.3632 1.2972 5 6 4.5471 -0.3925 1.4060 6 6 4.9418 -0.7924 2.8291 7 6 6.4441 -0.8227 2.9440 8 8 7.1313 -0.5516 1.9822 9 7 7.0238 -1.1520 4.1152 10 6 8.4843 -1.1820 4.2268 11 6 8.8790 -1.5818 5.6499 12 6 8.4160 -0.4979 6.6310 13 6 8.7847 -0.9198 8.0567 14 7 10.2242 -1.2092 8.1099 15 6 11.0252 -0.5962 9.0360 16 1 10.7578 0.3764 9.4221 17 6 12.1810 -1.2249 9.4787 18 7 13.1450 -0.5179 10.0294 19 14 12.3681 -3.0742 9.2929 20 1 13.0641 -3.3754 8.0162 21 1 13.1630 -3.6079 10.4280 22 1 11.0258 -3.7093 9.2867 23 6 10.7879 -2.1685 7.1504 24 6 10.3994 -1.7346 5.7335 25 1 -1.0499 0.0002 0.0001 26 1 3.0089 0.9965 -0.2542 27 1 3.0097 -0.7173 -0.7351 28 1 4.9491 0.5955 1.1811 29 1 4.9505 -1.1182 0.6999 30 1 4.5398 -1.7804 3.0536 31 1 4.5382 -0.0668 3.5355 32 1 6.4741 -1.3692 4.8844 33 1 8.8861 -0.1939 4.0026 34 1 8.8877 -1.9072 3.5202 35 1 8.4042 -2.5291 5.9059 36 1 7.3357 -0.3724 6.5565 37 1 8.9094 0.4440 6.3912 38 1 8.2222 -1.8124 8.3306 39 1 8.5484 -0.1121 8.7495 40 1 13.9528 -0.9572 10.3384 41 1 11.8738 -2.1829 7.2433 42 1 10.3906 -3.1632 7.3520 43 1 10.8741 -0.7811 5.5020 44 1 10.7296 -2.4884 5.0188 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755929441.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:10 Heat of formation + Delta-G solvation = -14.204727 kcal Electronic energy + Delta-G solvation = -22840.904566 eV Core-core repulsion = 19374.395253 eV Total energy + Delta-G solvation = -3466.509313 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.03524 -38.52007 -38.02691 -35.18937 -33.87755 -32.97114 -31.87515 -30.98935 -30.36718 -27.68952 -26.86682 -24.35326 -23.41753 -22.61625 -21.28142 -20.50352 -19.41770 -18.86203 -17.68426 -16.84166 -16.78569 -16.25997 -16.14186 -15.56546 -15.28443 -15.07750 -14.44115 -14.14737 -13.79312 -13.71566 -13.38415 -13.27877 -13.03294 -12.81486 -12.44179 -12.11787 -11.95420 -11.86503 -11.77687 -11.41134 -10.97133 -10.86715 -10.85720 -10.66700 -10.53295 -10.17192 -10.09396 -9.98098 -9.88676 -9.67522 -9.44115 -9.13563 -8.63352 -6.99076 -5.95916 -3.31666 2.02959 2.37309 2.46640 2.94775 3.30670 3.47124 3.49640 3.59733 4.13522 4.44608 4.51745 4.66544 4.79222 4.85323 4.92289 4.94841 4.96853 5.07126 5.16875 5.20144 5.39907 5.41424 5.45571 5.48483 5.65945 5.74417 5.85338 5.90038 6.03283 6.14860 6.23242 6.35744 6.38146 6.46797 6.60767 6.63145 6.67097 6.68226 6.94344 7.12829 7.35222 7.95458 8.05063 8.31891 8.93337 9.71208 10.09036 11.20104 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.045295 B = 0.002208 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.022929 B =12680.251986 C =12874.210955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.193 4.193 3 C 0.174 3.826 4 O -0.387 6.387 5 C 0.078 3.922 6 C -0.141 4.141 7 C 0.516 3.484 8 O -0.546 6.546 9 N -0.723 5.723 10 C 0.123 3.877 11 C -0.092 4.092 12 C -0.129 4.129 13 C 0.148 3.852 14 N -0.606 5.606 15 C -0.260 4.260 16 H 0.085 0.915 17 C 0.022 3.978 18 N -0.908 5.908 19 Si 0.884 3.116 20 H -0.288 1.288 21 H -0.303 1.303 22 H -0.271 1.271 23 C 0.126 3.874 24 C -0.126 4.126 25 H 0.222 0.778 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.402 0.598 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.021 0.979 39 H 0.062 0.938 40 H 0.262 0.738 41 H 0.073 0.927 42 H 0.024 0.976 43 H 0.068 0.932 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.655 -1.546 -17.637 27.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.193 4.193 3 C 0.098 3.902 4 O -0.307 6.307 5 C 0.001 3.999 6 C -0.181 4.181 7 C 0.302 3.698 8 O -0.424 6.424 9 N -0.375 5.375 10 C 0.000 4.000 11 C -0.111 4.111 12 C -0.169 4.169 13 C 0.022 3.978 14 N -0.330 5.330 15 C -0.388 4.388 16 H 0.102 0.898 17 C -0.176 4.176 18 N -0.551 5.551 19 Si 0.714 3.286 20 H -0.216 1.216 21 H -0.232 1.232 22 H -0.197 1.197 23 C 0.001 3.999 24 C -0.166 4.166 25 H 0.239 0.761 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.237 0.763 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.039 0.961 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.042 0.958 43 H 0.087 0.913 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.085 -1.375 -18.055 27.043 hybrid contribution -0.036 -1.117 0.171 1.131 sum -20.121 -2.492 -17.884 27.036 Atomic orbital electron populations 1.24992 0.95913 1.00601 0.97729 1.22568 0.93921 1.00768 1.02078 1.19052 0.84616 1.00601 0.85899 1.87868 1.21773 1.90563 1.30451 1.22162 0.79675 1.01738 0.96278 1.21468 0.92740 1.05306 0.98556 1.20327 0.89902 0.76664 0.82943 1.90720 1.65420 1.48839 1.37454 1.46058 1.08538 1.69969 1.12901 1.21560 0.78762 1.02062 0.97625 1.21366 0.97661 0.99370 0.92656 1.22138 0.98932 0.98484 0.97297 1.20909 0.85133 0.98080 0.93686 1.44345 1.03047 1.50209 1.35359 1.18923 1.03054 0.99885 1.16975 0.89759 1.25286 0.96582 0.97657 0.98111 1.69838 1.06137 1.34986 1.44165 0.86939 0.77602 0.88112 0.75926 1.21629 1.23179 1.19654 1.21326 0.98652 0.92090 0.87882 1.21988 0.93697 1.01879 0.99005 0.76129 0.90572 0.90613 0.91916 0.91993 0.87926 0.87831 0.76287 0.91311 0.91659 0.91145 0.92923 0.91670 0.96125 0.91912 0.92777 0.90878 0.95783 0.91337 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 19.25 29.55 0.57 -0.68 16 2 C -0.19 -1.68 13.73 -37.12 -0.51 -2.19 16 3 C 0.17 1.32 6.41 34.37 0.22 1.54 16 4 O -0.39 -3.67 10.30 -35.23 -0.36 -4.04 16 5 C 0.08 0.68 5.23 37.16 0.19 0.88 16 6 C -0.14 -1.13 6.07 -27.88 -0.17 -1.30 16 7 C 0.52 5.74 7.83 -10.99 -0.09 5.65 16 8 O -0.55 -8.16 15.98 5.56 0.09 -8.07 16 9 N -0.72 -7.48 5.27 -60.30 -0.32 -7.80 16 10 C 0.12 1.54 5.07 -4.04 -0.02 1.52 16 11 C -0.09 -1.26 2.19 -90.42 -0.20 -1.46 16 12 C -0.13 -1.90 5.27 -26.45 -0.14 -2.04 16 13 C 0.15 2.74 6.50 -3.71 -0.02 2.72 16 14 N -0.61 -13.97 2.77 -172.32 -0.48 -14.45 16 15 C -0.26 -7.18 10.03 -15.06 -0.15 -7.33 16 16 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 17 C 0.02 0.65 5.23 -17.43 -0.09 0.55 16 18 N -0.91 -27.73 13.97 55.49 0.78 -26.96 16 19 Si 0.88 22.20 24.34 -169.99 -4.14 18.06 16 20 H -0.29 -6.99 6.62 56.52 0.37 -6.61 16 21 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 22 H -0.27 -6.68 6.64 56.52 0.38 -6.30 16 23 C 0.13 2.66 4.21 -3.71 -0.02 2.64 16 24 C -0.13 -2.10 5.36 -26.61 -0.14 -2.24 16 25 H 0.22 0.74 7.80 -54.10 -0.42 0.32 16 26 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.56 8.10 -51.93 -0.42 0.13 16 29 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 30 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.40 3.24 7.65 -40.82 -0.31 2.93 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 36 H 0.05 0.61 7.16 -51.93 -0.37 0.24 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 1.18 7.93 -51.93 -0.41 0.76 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.07 1.71 4.50 -51.93 -0.23 1.48 16 42 H 0.02 0.50 7.07 -51.93 -0.37 0.14 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 359.62 15.07 5.42 5.42 Total: -1.00 -33.78 359.62 -6.80 -40.58 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -7.22 Total: -1.00 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -0.56 Total: -1.75 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: -0.02 Total: -49.21 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.27 Total: -12.11 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.14 Total: 18.06 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.78 -6.80 -40.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755929441.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.374 kcal (2) G-P(sol) polarization free energy of solvation -33.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds