Wall clock time and date at job start Tue Mar 31 2020 08:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42903 * 109.47018 * 285.67617 * 3 2 1 5 5 C 1.42904 * 113.99957 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47210 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47193 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99638 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00068 * 180.02562 * 7 6 5 10 10 C 1.46503 * 120.00084 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47208 * 179.97438 * 10 9 7 12 12 C 1.53352 * 109.41800 * 295.12674 * 11 10 9 13 13 C 1.53190 * 109.15070 * 178.67720 * 12 11 10 14 14 N 1.46925 * 108.89356 * 54.57285 * 13 12 11 15 15 C 1.36935 * 120.62758 * 126.30089 * 14 13 12 16 16 H 1.08001 * 120.00088 * 332.62829 * 15 14 13 17 17 C 1.38817 * 119.99782 * 152.62208 * 15 14 13 18 18 N 1.31618 * 119.99923 * 159.36242 * 17 15 14 19 19 Si 1.86801 * 120.00195 * 339.36341 * 17 15 14 20 20 H 1.48501 * 109.47054 * 92.89675 * 19 17 15 21 21 H 1.48497 * 109.47324 * 212.90179 * 19 17 15 22 22 H 1.48501 * 109.46722 * 332.89954 * 19 17 15 23 23 C 1.46926 * 118.73822 * 306.31916 * 14 13 12 24 24 C 1.53037 * 109.46053 * 174.99519 * 11 10 9 25 25 H 4.38442 * 5.44373 * 179.97438 * 4 1 2 26 26 H 1.08999 * 109.47093 * 165.67990 * 3 2 1 27 27 H 1.09000 * 109.47323 * 45.67212 * 3 2 1 28 28 H 1.09005 * 109.47352 * 59.99686 * 5 4 3 29 29 H 1.08997 * 109.46986 * 300.00295 * 5 4 3 30 30 H 1.08996 * 109.47061 * 59.99753 * 6 5 4 31 31 H 1.09008 * 109.46669 * 299.99829 * 6 5 4 32 32 H 0.97004 * 120.00152 * 359.97438 * 9 7 6 33 33 H 1.08996 * 109.47010 * 59.99318 * 10 9 7 34 34 H 1.08996 * 109.46600 * 299.99324 * 10 9 7 35 35 H 1.09008 * 109.45887 * 55.02318 * 11 10 9 36 36 H 1.09004 * 109.68561 * 58.70472 * 12 11 10 37 37 H 1.09004 * 109.47287 * 298.51133 * 12 11 10 38 38 H 1.09004 * 109.58215 * 294.71811 * 13 12 11 39 39 H 1.08997 * 109.58828 * 174.43980 * 13 12 11 40 40 H 0.96999 * 119.99917 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.58248 * 173.39705 * 23 14 13 42 42 H 1.08994 * 109.58922 * 293.68210 * 23 14 13 43 43 H 1.09003 * 109.49698 * 61.43697 * 24 11 10 44 44 H 1.08994 * 109.52761 * 301.35110 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1225 -0.3632 1.2972 5 6 4.5471 -0.3925 1.4060 6 6 4.9418 -0.7924 2.8291 7 6 6.4441 -0.8227 2.9440 8 8 7.1313 -0.5516 1.9822 9 7 7.0238 -1.1520 4.1152 10 6 8.4843 -1.1820 4.2268 11 6 8.8790 -1.5818 5.6499 12 6 8.4160 -0.4979 6.6310 13 6 8.7847 -0.9198 8.0567 14 7 10.2242 -1.2092 8.1099 15 6 11.0252 -0.5962 9.0360 16 1 10.7578 0.3764 9.4221 17 6 12.1810 -1.2249 9.4787 18 7 13.1450 -0.5179 10.0294 19 14 12.3681 -3.0742 9.2929 20 1 13.0641 -3.3754 8.0162 21 1 13.1630 -3.6079 10.4280 22 1 11.0258 -3.7093 9.2867 23 6 10.7879 -2.1685 7.1504 24 6 10.3994 -1.7346 5.7335 25 1 -1.0499 0.0002 0.0001 26 1 3.0089 0.9965 -0.2542 27 1 3.0097 -0.7173 -0.7351 28 1 4.9491 0.5955 1.1811 29 1 4.9505 -1.1182 0.6999 30 1 4.5398 -1.7804 3.0536 31 1 4.5382 -0.0668 3.5355 32 1 6.4741 -1.3692 4.8844 33 1 8.8861 -0.1939 4.0026 34 1 8.8877 -1.9072 3.5202 35 1 8.4042 -2.5291 5.9059 36 1 7.3357 -0.3724 6.5565 37 1 8.9094 0.4440 6.3912 38 1 8.2222 -1.8124 8.3306 39 1 8.5484 -0.1121 8.7495 40 1 13.9528 -0.9572 10.3384 41 1 11.8738 -2.1829 7.2433 42 1 10.3906 -3.1632 7.3520 43 1 10.8741 -0.7811 5.5020 44 1 10.7296 -2.4884 5.0188 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755929441.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:09 Heat of formation + Delta-G solvation = -38.089036 kcal Electronic energy + Delta-G solvation = -22841.940268 eV Core-core repulsion = 19374.395253 eV Total energy + Delta-G solvation = -3467.545015 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.94952 -39.60871 -38.97908 -36.48739 -34.54559 -34.41962 -33.06698 -32.27115 -31.84486 -28.73905 -27.80304 -25.76521 -24.63741 -23.90223 -22.71081 -21.41859 -20.77061 -19.41961 -18.79574 -18.33365 -17.46860 -17.38487 -16.97966 -16.79271 -16.39142 -15.91499 -15.82278 -15.42243 -15.16867 -15.02208 -14.63641 -14.42094 -14.31324 -13.91187 -13.61970 -13.60144 -13.35778 -12.95002 -12.63233 -12.53639 -12.46860 -12.24070 -12.11088 -11.72828 -11.57974 -11.54493 -11.45194 -11.31022 -11.18288 -10.95070 -10.65324 -10.57485 -10.06344 -8.90736 -8.15728 -5.46735 1.30832 1.41772 1.44489 1.51138 1.62504 1.82062 2.16947 2.42659 2.99269 3.07173 3.39067 3.60984 3.74416 3.81588 3.88392 3.97333 4.06517 4.23306 4.31456 4.40002 4.44349 4.45768 4.53371 4.56119 4.65325 4.75766 4.79095 4.82549 4.85410 4.90838 5.02786 5.03322 5.12043 5.18701 5.23010 5.29672 5.42882 5.61846 5.88577 6.06590 6.13714 6.55886 6.59547 6.94729 7.24235 7.65413 8.05177 9.04346 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.045295 B = 0.002208 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.022929 B =12680.251986 C =12874.210955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.239 4.239 3 C 0.167 3.833 4 O -0.400 6.400 5 C 0.079 3.921 6 C -0.132 4.132 7 C 0.516 3.484 8 O -0.588 6.588 9 N -0.713 5.713 10 C 0.134 3.866 11 C -0.080 4.080 12 C -0.118 4.118 13 C 0.140 3.860 14 N -0.622 5.622 15 C -0.248 4.248 16 H 0.048 0.952 17 C -0.039 4.039 18 N -0.960 5.960 19 Si 0.950 3.050 20 H -0.275 1.275 21 H -0.313 1.313 22 H -0.258 1.258 23 C 0.119 3.881 24 C -0.121 4.121 25 H 0.253 0.747 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.417 0.583 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.045 0.955 38 H 0.041 0.959 39 H 0.050 0.950 40 H 0.260 0.740 41 H 0.045 0.955 42 H 0.037 0.963 43 H 0.051 0.949 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.489 -3.340 -19.090 30.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.239 4.239 3 C 0.092 3.908 4 O -0.320 6.320 5 C 0.002 3.998 6 C -0.171 4.171 7 C 0.304 3.696 8 O -0.469 6.469 9 N -0.366 5.366 10 C 0.010 3.990 11 C -0.099 4.099 12 C -0.157 4.157 13 C 0.016 3.984 14 N -0.347 5.347 15 C -0.378 4.378 16 H 0.066 0.934 17 C -0.234 4.234 18 N -0.606 5.606 19 Si 0.779 3.221 20 H -0.202 1.202 21 H -0.242 1.242 22 H -0.182 1.182 23 C -0.005 4.005 24 C -0.161 4.161 25 H 0.269 0.731 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.255 0.745 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.985 -3.188 -19.523 30.325 hybrid contribution 0.739 -0.461 0.601 1.058 sum -22.246 -3.649 -18.922 29.432 Atomic orbital electron populations 1.25864 0.96839 0.99104 0.96086 1.23100 0.94889 1.02276 1.03655 1.19230 0.84540 1.01562 0.85466 1.87828 1.21924 1.90731 1.31567 1.22132 0.79479 1.01374 0.96812 1.21430 0.90245 1.06963 0.98479 1.20809 0.90992 0.75501 0.82291 1.90711 1.66579 1.50710 1.38913 1.45916 1.07714 1.69519 1.13410 1.21262 0.80094 1.01170 0.96454 1.21236 0.95561 0.99919 0.93147 1.22019 1.01207 0.97726 0.94780 1.21141 0.82634 0.98581 0.96060 1.44502 1.04701 1.50409 1.35061 1.18873 1.03269 0.98687 1.16938 0.93381 1.25948 0.96520 1.02008 0.98906 1.69981 1.06987 1.36743 1.46895 0.85856 0.77975 0.82385 0.75870 1.20207 1.24238 1.18199 1.21395 0.97048 0.92241 0.89852 1.21884 0.95929 1.01675 0.96562 0.73088 0.89575 0.89450 0.92547 0.92331 0.85897 0.86139 0.74548 0.92897 0.91593 0.89107 0.88958 0.93646 0.94097 0.93092 0.93068 0.93710 0.94469 0.93052 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 19.25 74.32 1.43 -0.57 16 2 C -0.24 -3.88 13.73 31.13 0.43 -3.45 16 3 C 0.17 2.39 6.41 70.18 0.45 2.84 16 4 O -0.40 -7.01 10.30 -148.98 -1.53 -8.54 16 5 C 0.08 1.25 5.23 71.98 0.38 1.63 16 6 C -0.13 -1.73 6.07 29.85 0.18 -1.55 16 7 C 0.52 10.16 7.83 87.66 0.69 10.85 16 8 O -0.59 -16.75 15.98 -3.04 -0.05 -16.80 16 9 N -0.71 -12.22 5.27 -463.07 -2.44 -14.66 16 10 C 0.13 2.95 5.07 86.38 0.44 3.39 16 11 C -0.08 -1.93 2.19 -10.66 -0.02 -1.95 16 12 C -0.12 -3.14 5.27 30.78 0.16 -2.98 16 13 C 0.14 4.93 6.50 86.36 0.56 5.49 16 14 N -0.62 -28.25 2.77 -699.10 -1.94 -30.18 16 15 C -0.25 -14.02 10.03 84.03 0.84 -13.18 16 16 H 0.05 2.99 8.06 -2.91 -0.02 2.97 16 17 C -0.04 -2.31 5.23 84.86 0.44 -1.87 16 18 N -0.96 -60.78 13.97 21.65 0.30 -60.48 16 19 Si 0.95 46.33 24.34 68.60 1.67 48.00 16 20 H -0.28 -12.69 6.62 99.48 0.66 -12.03 16 21 H -0.31 -15.63 7.11 99.48 0.71 -14.92 16 22 H -0.26 -11.82 6.64 99.48 0.66 -11.16 16 23 C 0.12 4.81 4.21 86.36 0.36 5.18 16 24 C -0.12 -3.75 5.36 30.67 0.16 -3.58 16 25 H 0.25 0.96 7.80 -4.42 -0.03 0.92 16 26 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.06 0.95 8.10 -2.38 -0.02 0.93 16 29 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 30 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.42 4.74 7.65 -92.71 -0.71 4.03 16 33 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 35 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.09 1.75 7.16 -2.38 -0.02 1.73 16 37 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.04 1.30 8.14 -2.39 -0.02 1.29 16 39 H 0.05 1.88 7.93 -2.39 -0.02 1.86 16 40 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 41 H 0.04 2.05 4.50 -2.39 -0.01 2.04 16 42 H 0.04 1.42 7.07 -2.39 -0.02 1.40 16 43 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -75.97 359.62 2.69 -73.28 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 0.17 Total: 9.15 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 6.50 Total: 0.24 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -4.08 Total: -105.32 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -1.58 Total: -25.34 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.67 Total: 48.00 kcal Total: -75.97 2.69 -73.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755929441.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.192 kcal (2) G-P(sol) polarization free energy of solvation -75.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds