Wall clock time and date at job start Tue Mar 31 2020 08:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47465 * 339.83610 * 3 2 1 5 5 C 1.42897 * 114.00017 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47309 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47238 * 180.02562 * 6 5 4 8 8 O 1.21279 * 120.00226 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00020 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00029 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47247 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.49703 * 54.93491 * 11 10 9 13 13 C 1.53035 * 109.50221 * 174.99881 * 11 10 9 14 14 C 1.53038 * 109.54104 * 181.31648 * 13 11 10 15 15 C 1.53190 * 109.31396 * 298.63620 * 14 13 11 16 16 N 1.46919 * 108.77480 * 54.63445 * 15 14 13 17 17 C 1.36935 * 120.63146 * 126.37369 * 16 15 14 18 18 H 1.08001 * 119.99930 * 332.77844 * 17 16 15 19 19 C 1.38813 * 120.00067 * 152.77865 * 17 16 15 20 20 N 1.31628 * 120.00014 * 159.76225 * 19 17 16 21 21 Si 1.86802 * 120.00108 * 339.75897 * 19 17 16 22 22 H 1.48497 * 109.46932 * 94.91307 * 21 19 17 23 23 H 1.48499 * 109.46952 * 214.91067 * 21 19 17 24 24 H 1.48503 * 109.47105 * 334.90966 * 21 19 17 25 25 C 1.46928 * 118.74145 * 306.38934 * 16 15 14 26 26 H 4.38450 * 5.44401 * 180.02562 * 4 1 2 27 27 H 1.09002 * 109.46216 * 219.83575 * 3 2 1 28 28 H 1.09001 * 109.46986 * 99.83829 * 3 2 1 29 29 H 1.09007 * 109.46950 * 60.00173 * 5 4 3 30 30 H 1.09000 * 109.47151 * 300.00064 * 5 4 3 31 31 H 1.08999 * 109.47087 * 59.99851 * 6 5 4 32 32 H 1.09002 * 109.46813 * 300.00577 * 6 5 4 33 33 H 0.97001 * 119.99925 * 0.27631 * 9 7 6 34 34 H 1.09000 * 109.47090 * 300.00066 * 10 9 7 35 35 H 1.08999 * 109.47290 * 60.00002 * 10 9 7 36 36 H 1.09004 * 109.46074 * 301.33785 * 13 11 10 37 37 H 1.09006 * 109.45912 * 61.30741 * 13 11 10 38 38 H 1.09003 * 109.49403 * 58.58989 * 14 13 11 39 39 H 1.09002 * 109.49561 * 178.65071 * 14 13 11 40 40 H 1.08997 * 109.58736 * 174.42604 * 15 14 13 41 41 H 1.09005 * 109.58562 * 294.85086 * 15 14 13 42 42 H 0.96998 * 119.99748 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.59076 * 293.82929 * 25 16 15 44 44 H 1.09001 * 109.58902 * 173.39659 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1230 -1.2638 0.4644 5 6 4.5476 -1.3688 0.5038 6 6 4.9428 -2.7565 1.0127 7 6 6.4452 -2.8670 1.0549 8 8 7.1321 -1.9281 0.7121 9 7 7.0254 -4.0088 1.4744 10 6 8.4858 -4.1164 1.5149 11 6 8.8811 -5.5041 2.0239 12 1 8.4053 -6.2668 1.4075 13 6 10.4014 -5.6618 1.9488 14 6 10.7950 -7.0613 2.4269 15 6 10.3620 -7.2389 3.8856 16 7 8.9260 -6.9468 3.9914 17 6 8.0695 -7.8529 4.5575 18 1 8.3039 -8.9069 4.5312 19 6 6.9001 -7.4169 5.1651 20 7 5.9024 -8.2554 5.3501 21 14 6.7422 -5.6403 5.7202 22 1 6.0694 -4.8483 4.6595 23 1 5.9382 -5.5810 6.9673 24 1 8.0934 -5.0794 5.9751 25 6 8.4263 -5.6640 3.4780 26 1 -1.0498 -0.0004 0.0000 27 1 3.0089 0.7900 0.6584 28 1 3.0093 0.1764 -1.0126 29 1 4.9496 -0.6079 1.1729 30 1 4.9506 -1.2213 -0.4981 31 1 4.5408 -3.5170 0.3434 32 1 4.5396 -2.9045 2.0146 33 1 6.4759 -4.7609 1.7455 34 1 8.8889 -3.9689 0.5130 35 1 8.8878 -3.3555 2.1838 36 1 10.7304 -5.5241 0.9188 37 1 10.8759 -4.9143 2.5846 38 1 10.3012 -7.8097 1.8071 39 1 11.8757 -7.1813 2.3506 40 1 10.5503 -8.2653 4.2003 41 1 10.9223 -6.5515 4.5194 42 1 5.0854 -7.9508 5.7750 43 1 8.8288 -4.8482 4.0785 44 1 7.3373 -5.6513 3.5238 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756779042.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:16 Heat of formation + Delta-G solvation = -15.048893 kcal Electronic energy + Delta-G solvation = -23476.039516 eV Core-core repulsion = 20009.493597 eV Total energy + Delta-G solvation = -3466.545919 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.85531 -38.41156 -37.96750 -34.88372 -33.73310 -33.13690 -31.88799 -30.95474 -30.47639 -27.36059 -25.87896 -25.32801 -23.54157 -22.41942 -20.96156 -20.31952 -19.38207 -18.72452 -17.49376 -16.90391 -16.63958 -16.09435 -15.98569 -15.58008 -15.20724 -15.05823 -14.36670 -14.06377 -13.64727 -13.53733 -13.30568 -13.26070 -12.96868 -12.75052 -12.47616 -12.14126 -11.81478 -11.67879 -11.62730 -11.47989 -10.84112 -10.83266 -10.72115 -10.63692 -10.55418 -10.16023 -10.01932 -9.82838 -9.78568 -9.73860 -9.49285 -8.95650 -8.67537 -7.02445 -6.00144 -3.36068 2.16931 2.50179 2.65308 3.13930 3.23508 3.44650 3.46787 3.76179 4.28126 4.46197 4.65029 4.78661 4.85889 4.92981 5.07547 5.08370 5.13565 5.21052 5.27100 5.35190 5.40354 5.57418 5.58354 5.63961 5.66523 5.76528 5.82041 6.00126 6.06720 6.09934 6.27099 6.30523 6.47631 6.52217 6.54726 6.65504 6.68533 6.83755 6.93224 7.25880 7.55872 7.90821 8.23360 8.27934 8.88994 9.66524 10.04852 11.15695 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016152 B = 0.003516 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.142460 B = 7962.198065 C = 9292.548697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.192 4.192 3 C 0.174 3.826 4 O -0.385 6.385 5 C 0.080 3.920 6 C -0.144 4.144 7 C 0.519 3.481 8 O -0.552 6.552 9 N -0.723 5.723 10 C 0.126 3.874 11 C -0.120 4.120 12 H 0.080 0.920 13 C -0.101 4.101 14 C -0.135 4.135 15 C 0.146 3.854 16 N -0.606 5.606 17 C -0.259 4.259 18 H 0.086 0.914 19 C 0.023 3.977 20 N -0.907 5.907 21 Si 0.881 3.119 22 H -0.289 1.289 23 H -0.303 1.303 24 H -0.271 1.271 25 C 0.134 3.866 26 H 0.222 0.778 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.407 0.593 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.022 0.978 42 H 0.263 0.737 43 H 0.026 0.974 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.515 12.917 -11.218 17.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.193 4.193 3 C 0.098 3.902 4 O -0.305 6.305 5 C 0.004 3.996 6 C -0.184 4.184 7 C 0.305 3.695 8 O -0.430 6.430 9 N -0.374 5.374 10 C 0.002 3.998 11 C -0.141 4.141 12 H 0.099 0.901 13 C -0.139 4.139 14 C -0.174 4.174 15 C 0.020 3.980 16 N -0.329 5.329 17 C -0.387 4.387 18 H 0.104 0.896 19 C -0.176 4.176 20 N -0.550 5.550 21 Si 0.711 3.289 22 H -0.217 1.217 23 H -0.231 1.231 24 H -0.196 1.196 25 C 0.008 3.992 26 H 0.239 0.761 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.243 0.757 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.040 0.960 42 H 0.073 0.927 43 H 0.044 0.956 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.272 13.363 -11.300 17.546 hybrid contribution -0.566 0.766 0.498 1.074 sum -1.837 14.128 -10.802 17.879 Atomic orbital electron populations 1.24978 0.95899 0.97952 1.00491 1.22580 0.93938 1.01948 1.00791 1.19047 0.84623 0.86830 0.99689 1.87891 1.21810 1.33508 1.87313 1.22149 0.79620 0.96619 1.01242 1.21490 0.92799 0.98825 1.05290 1.20296 0.89929 0.82504 0.76782 1.90682 1.65482 1.37957 1.48905 1.46096 1.08525 1.16209 1.66619 1.21462 0.79222 0.98053 1.01079 1.21987 0.97158 0.94936 0.99973 0.90139 1.21344 0.94391 0.97916 1.00238 1.21992 0.99418 0.96538 0.99432 1.20957 0.84782 0.99295 0.92925 1.44341 1.02836 1.17207 1.68523 1.18948 1.00261 0.89340 1.30175 0.89618 1.25281 0.96444 0.97105 0.98789 1.69833 1.04218 1.35214 1.45781 0.86995 0.77648 0.86406 0.77824 1.21715 1.23138 1.19593 1.21376 0.98463 0.88665 0.90719 0.76138 0.90659 0.90671 0.92010 0.92014 0.87734 0.87723 0.75745 0.91619 0.91624 0.92759 0.92333 0.91934 0.92564 0.91908 0.96004 0.92735 0.95568 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 19.25 29.55 0.57 -1.01 16 2 C -0.19 -2.04 13.73 -37.12 -0.51 -2.55 16 3 C 0.17 1.67 6.41 34.37 0.22 1.89 16 4 O -0.39 -4.66 10.30 -35.23 -0.36 -5.02 16 5 C 0.08 0.91 5.23 37.16 0.19 1.11 16 6 C -0.14 -1.71 6.07 -27.88 -0.17 -1.88 16 7 C 0.52 7.53 7.83 -10.99 -0.09 7.44 16 8 O -0.55 -9.42 15.98 5.56 0.09 -9.33 16 9 N -0.72 -10.60 5.33 -60.30 -0.32 -10.92 16 10 C 0.13 1.86 5.07 -4.04 -0.02 1.84 16 11 C -0.12 -1.94 2.37 -90.50 -0.21 -2.16 16 12 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 13 C -0.10 -1.46 5.17 -26.69 -0.14 -1.60 16 14 C -0.13 -2.07 6.08 -26.61 -0.16 -2.24 16 15 C 0.15 2.77 6.52 -3.72 -0.02 2.75 16 16 N -0.61 -13.82 2.77 -172.32 -0.48 -14.30 16 17 C -0.26 -7.01 10.04 -15.06 -0.15 -7.16 16 18 H 0.09 2.49 8.05 -52.49 -0.42 2.06 16 19 C 0.02 0.64 5.24 -17.43 -0.09 0.54 16 20 N -0.91 -27.07 13.97 55.49 0.78 -26.29 16 21 Si 0.88 21.81 24.35 -169.99 -4.14 17.67 16 22 H -0.29 -6.71 6.70 56.52 0.38 -6.33 16 23 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 24 H -0.27 -6.70 6.46 56.52 0.36 -6.34 16 25 C 0.13 2.74 3.28 -3.71 -0.01 2.72 16 26 H 0.22 1.12 7.80 -54.10 -0.42 0.70 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.70 8.10 -51.92 -0.42 0.28 16 30 H 0.06 0.67 8.10 -51.93 -0.42 0.24 16 31 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.41 5.83 7.72 -40.82 -0.31 5.52 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.03 0.56 6.98 -51.93 -0.36 0.19 16 44 H 0.07 1.52 3.71 -51.93 -0.19 1.33 16 LS Contribution 359.66 15.07 5.42 5.42 Total: -1.00 -32.62 359.66 -6.85 -39.47 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -7.24 Total: 3.59 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -0.60 Total: -0.30 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.02 Total: -51.51 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.27 Total: -14.35 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.14 Total: 17.67 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.62 -6.85 -39.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756779042.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.424 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds