Wall clock time and date at job start Tue Mar 31 2020 08:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47465 * 339.83610 * 3 2 1 5 5 C 1.42897 * 114.00017 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47309 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47238 * 180.02562 * 6 5 4 8 8 O 1.21279 * 120.00226 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00020 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00029 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47247 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.49703 * 54.93491 * 11 10 9 13 13 C 1.53035 * 109.50221 * 174.99881 * 11 10 9 14 14 C 1.53038 * 109.54104 * 181.31648 * 13 11 10 15 15 C 1.53190 * 109.31396 * 298.63620 * 14 13 11 16 16 N 1.46919 * 108.77480 * 54.63445 * 15 14 13 17 17 C 1.36935 * 120.63146 * 126.37369 * 16 15 14 18 18 H 1.08001 * 119.99930 * 332.77844 * 17 16 15 19 19 C 1.38813 * 120.00067 * 152.77865 * 17 16 15 20 20 N 1.31628 * 120.00014 * 159.76225 * 19 17 16 21 21 Si 1.86802 * 120.00108 * 339.75897 * 19 17 16 22 22 H 1.48497 * 109.46932 * 94.91307 * 21 19 17 23 23 H 1.48499 * 109.46952 * 214.91067 * 21 19 17 24 24 H 1.48503 * 109.47105 * 334.90966 * 21 19 17 25 25 C 1.46928 * 118.74145 * 306.38934 * 16 15 14 26 26 H 4.38450 * 5.44401 * 180.02562 * 4 1 2 27 27 H 1.09002 * 109.46216 * 219.83575 * 3 2 1 28 28 H 1.09001 * 109.46986 * 99.83829 * 3 2 1 29 29 H 1.09007 * 109.46950 * 60.00173 * 5 4 3 30 30 H 1.09000 * 109.47151 * 300.00064 * 5 4 3 31 31 H 1.08999 * 109.47087 * 59.99851 * 6 5 4 32 32 H 1.09002 * 109.46813 * 300.00577 * 6 5 4 33 33 H 0.97001 * 119.99925 * 0.27631 * 9 7 6 34 34 H 1.09000 * 109.47090 * 300.00066 * 10 9 7 35 35 H 1.08999 * 109.47290 * 60.00002 * 10 9 7 36 36 H 1.09004 * 109.46074 * 301.33785 * 13 11 10 37 37 H 1.09006 * 109.45912 * 61.30741 * 13 11 10 38 38 H 1.09003 * 109.49403 * 58.58989 * 14 13 11 39 39 H 1.09002 * 109.49561 * 178.65071 * 14 13 11 40 40 H 1.08997 * 109.58736 * 174.42604 * 15 14 13 41 41 H 1.09005 * 109.58562 * 294.85086 * 15 14 13 42 42 H 0.96998 * 119.99748 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.59076 * 293.82929 * 25 16 15 44 44 H 1.09001 * 109.58902 * 173.39659 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1230 -1.2638 0.4644 5 6 4.5476 -1.3688 0.5038 6 6 4.9428 -2.7565 1.0127 7 6 6.4452 -2.8670 1.0549 8 8 7.1321 -1.9281 0.7121 9 7 7.0254 -4.0088 1.4744 10 6 8.4858 -4.1164 1.5149 11 6 8.8811 -5.5041 2.0239 12 1 8.4053 -6.2668 1.4075 13 6 10.4014 -5.6618 1.9488 14 6 10.7950 -7.0613 2.4269 15 6 10.3620 -7.2389 3.8856 16 7 8.9260 -6.9468 3.9914 17 6 8.0695 -7.8529 4.5575 18 1 8.3039 -8.9069 4.5312 19 6 6.9001 -7.4169 5.1651 20 7 5.9024 -8.2554 5.3501 21 14 6.7422 -5.6403 5.7202 22 1 6.0694 -4.8483 4.6595 23 1 5.9382 -5.5810 6.9673 24 1 8.0934 -5.0794 5.9751 25 6 8.4263 -5.6640 3.4780 26 1 -1.0498 -0.0004 0.0000 27 1 3.0089 0.7900 0.6584 28 1 3.0093 0.1764 -1.0126 29 1 4.9496 -0.6079 1.1729 30 1 4.9506 -1.2213 -0.4981 31 1 4.5408 -3.5170 0.3434 32 1 4.5396 -2.9045 2.0146 33 1 6.4759 -4.7609 1.7455 34 1 8.8889 -3.9689 0.5130 35 1 8.8878 -3.3555 2.1838 36 1 10.7304 -5.5241 0.9188 37 1 10.8759 -4.9143 2.5846 38 1 10.3012 -7.8097 1.8071 39 1 11.8757 -7.1813 2.3506 40 1 10.5503 -8.2653 4.2003 41 1 10.9223 -6.5515 4.5194 42 1 5.0854 -7.9508 5.7750 43 1 8.8288 -4.8482 4.0785 44 1 7.3373 -5.6513 3.5238 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756779042.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:15 Heat of formation + Delta-G solvation = -37.449514 kcal Electronic energy + Delta-G solvation = -23477.010880 eV Core-core repulsion = 20009.493597 eV Total energy + Delta-G solvation = -3467.517283 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.01619 -39.65721 -39.01752 -36.25651 -34.83253 -34.47369 -33.09340 -32.54464 -31.81818 -28.17675 -27.24088 -26.98309 -24.64762 -23.92580 -22.34875 -21.52857 -20.75581 -19.44054 -18.83729 -18.43797 -17.53596 -17.41102 -17.07907 -16.87491 -16.44131 -15.94636 -15.85271 -15.51889 -15.13085 -14.89935 -14.58575 -14.55821 -14.37371 -13.94188 -13.61579 -13.57697 -13.35453 -13.06257 -12.73028 -12.55472 -12.51262 -12.18694 -12.08150 -11.69294 -11.57754 -11.56522 -11.48530 -11.39300 -11.26286 -10.97647 -10.65548 -10.60291 -10.13576 -8.91844 -8.16302 -5.47577 1.25443 1.40975 1.41479 1.48181 1.52944 1.79641 2.12987 2.39049 2.96429 3.04929 3.33081 3.56957 3.68047 3.85039 3.92919 3.98169 3.99468 4.15486 4.28123 4.31281 4.42092 4.43796 4.48556 4.51454 4.62337 4.73109 4.74331 4.77068 4.80727 4.89647 4.98764 5.00631 5.10781 5.20513 5.25004 5.31534 5.42054 5.59895 5.87595 6.04339 6.13519 6.41747 6.57237 6.92633 7.10019 7.63199 8.03986 9.03530 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016152 B = 0.003516 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.142460 B = 7962.198065 C = 9292.548697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.240 4.240 3 C 0.167 3.833 4 O -0.404 6.404 5 C 0.084 3.916 6 C -0.141 4.141 7 C 0.520 3.480 8 O -0.577 6.577 9 N -0.726 5.726 10 C 0.131 3.869 11 C -0.107 4.107 12 H 0.075 0.925 13 C -0.099 4.099 14 C -0.125 4.125 15 C 0.137 3.863 16 N -0.621 5.621 17 C -0.246 4.246 18 H 0.052 0.948 19 C -0.030 4.030 20 N -0.955 5.955 21 Si 0.940 3.060 22 H -0.266 1.266 23 H -0.316 1.316 24 H -0.269 1.269 25 C 0.130 3.870 26 H 0.254 0.746 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.120 0.880 32 H 0.106 0.894 33 H 0.408 0.592 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.088 0.912 40 H 0.052 0.948 41 H 0.031 0.969 42 H 0.261 0.739 43 H 0.024 0.976 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.824 14.772 -12.692 19.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.240 4.240 3 C 0.092 3.908 4 O -0.324 6.324 5 C 0.008 3.992 6 C -0.180 4.180 7 C 0.308 3.692 8 O -0.458 6.458 9 N -0.377 5.377 10 C 0.008 3.992 11 C -0.127 4.127 12 H 0.093 0.907 13 C -0.137 4.137 14 C -0.164 4.164 15 C 0.013 3.987 16 N -0.345 5.345 17 C -0.376 4.376 18 H 0.070 0.930 19 C -0.225 4.225 20 N -0.601 5.601 21 Si 0.769 3.231 22 H -0.192 1.192 23 H -0.245 1.245 24 H -0.194 1.194 25 C 0.005 3.995 26 H 0.270 0.730 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.138 0.862 32 H 0.124 0.876 33 H 0.244 0.756 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.071 0.929 43 H 0.042 0.958 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.545 15.239 -12.804 19.912 hybrid contribution -0.750 0.117 0.944 1.211 sum -1.294 15.356 -11.860 19.446 Atomic orbital electron populations 1.25873 0.96847 0.96209 0.98938 1.23127 0.94944 1.03603 1.02358 1.19261 0.84547 0.86152 1.00860 1.87846 1.21943 1.34989 1.87665 1.22086 0.79549 0.96151 1.01426 1.21484 0.90924 0.99784 1.05830 1.20644 0.90801 0.81866 0.75910 1.90669 1.66285 1.38734 1.50113 1.46172 1.08630 1.16394 1.66523 1.21400 0.79425 0.96707 1.01713 1.21804 0.98647 0.95711 0.96549 0.90707 1.21379 0.92732 0.97276 1.02284 1.21890 1.01284 0.97037 0.96171 1.21180 0.82704 0.98977 0.95888 1.44492 1.04050 1.17262 1.68694 1.18883 1.00575 0.88920 1.29242 0.92985 1.25823 0.96335 1.00782 0.99593 1.69956 1.04978 1.37319 1.47835 0.86024 0.77483 0.82350 0.77211 1.19192 1.24522 1.19402 1.21398 0.97473 0.87196 0.93438 0.73014 0.89467 0.89084 0.92261 0.91520 0.86203 0.87577 0.75611 0.90033 0.92041 0.89676 0.91572 0.92848 0.89314 0.92935 0.95065 0.92950 0.95779 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 19.25 74.32 1.43 -1.19 16 2 C -0.24 -4.86 13.73 31.12 0.43 -4.44 16 3 C 0.17 3.05 6.41 70.18 0.45 3.50 16 4 O -0.40 -9.36 10.30 -148.98 -1.53 -10.89 16 5 C 0.08 1.81 5.23 71.98 0.38 2.19 16 6 C -0.14 -3.12 6.07 29.85 0.18 -2.94 16 7 C 0.52 14.18 7.83 87.66 0.69 14.87 16 8 O -0.58 -18.72 15.98 -3.03 -0.05 -18.77 16 9 N -0.73 -19.87 5.33 -463.08 -2.47 -22.33 16 10 C 0.13 3.54 5.07 86.38 0.44 3.98 16 11 C -0.11 -3.19 2.37 -10.72 -0.03 -3.22 16 12 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 13 C -0.10 -2.49 5.17 30.62 0.16 -2.33 16 14 C -0.13 -3.48 6.08 30.67 0.19 -3.29 16 15 C 0.14 5.01 6.52 86.36 0.56 5.58 16 16 N -0.62 -28.00 2.77 -699.09 -1.94 -29.94 16 17 C -0.25 -13.62 10.04 84.03 0.84 -12.78 16 18 H 0.05 3.16 8.05 -2.91 -0.02 3.14 16 19 C -0.03 -1.73 5.24 84.86 0.44 -1.29 16 20 N -0.95 -58.61 13.97 21.65 0.30 -58.31 16 21 Si 0.94 45.50 24.35 68.60 1.67 47.17 16 22 H -0.27 -11.68 6.70 99.48 0.67 -11.01 16 23 H -0.32 -15.85 7.11 99.48 0.71 -15.15 16 24 H -0.27 -12.79 6.46 99.48 0.64 -12.14 16 25 C 0.13 5.13 3.28 86.36 0.28 5.41 16 26 H 0.25 1.88 7.80 -4.43 -0.03 1.84 16 27 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.06 1.28 8.10 -2.38 -0.02 1.26 16 30 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 31 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.41 11.06 7.72 -92.71 -0.72 10.35 16 34 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.05 1.98 7.93 -2.39 -0.02 1.96 16 41 H 0.03 1.09 8.14 -2.38 -0.02 1.08 16 42 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 43 H 0.02 0.97 6.98 -2.39 -0.02 0.96 16 44 H 0.05 2.21 3.71 -2.39 -0.01 2.20 16 Total: -1.00 -71.31 359.66 2.58 -68.73 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.16 Total: 20.30 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 6.44 Total: 4.05 kcal Atomic # 7 Polarization: -106.48 SS G_CDS: -4.10 Total: -110.58 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -1.58 Total: -29.67 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.67 Total: 47.17 kcal Total: -71.31 2.58 -68.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756779042.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.279 kcal (2) G-P(sol) polarization free energy of solvation -71.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds