Wall clock time and date at job start Tue Mar 31 2020 08:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 O 1.42903 * 109.47325 * 66.38809 * 3 2 1 5 5 C 1.42892 * 113.99752 * 180.02562 * 4 3 2 6 6 C 1.53010 * 109.46876 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47211 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99690 * 0.02562 * 7 6 5 9 9 N 1.34768 * 119.99852 * 180.02562 * 7 6 5 10 10 C 1.46501 * 119.99946 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47365 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.49753 * 304.93676 * 11 10 9 13 13 C 1.53038 * 109.50185 * 184.84137 * 11 10 9 14 14 C 1.53036 * 109.54015 * 178.68581 * 13 11 10 15 15 C 1.53186 * 109.31504 * 61.36345 * 14 13 11 16 16 N 1.46928 * 108.77549 * 305.36464 * 15 14 13 17 17 C 1.36943 * 120.63344 * 233.63227 * 16 15 14 18 18 H 1.07997 * 119.99993 * 151.80402 * 17 16 15 19 19 C 1.38814 * 119.99567 * 331.80705 * 17 16 15 20 20 N 1.31619 * 120.00048 * 343.08671 * 19 17 16 21 21 Si 1.86804 * 119.99834 * 163.09039 * 19 17 16 22 22 H 1.48504 * 109.46993 * 59.99321 * 21 19 17 23 23 H 1.48498 * 109.47174 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46833 * 300.00016 * 21 19 17 25 25 C 1.46928 * 118.73702 * 53.60864 * 16 15 14 26 26 H 4.38453 * 5.44387 * 180.02562 * 4 1 2 27 27 H 1.09003 * 109.46880 * 306.38396 * 3 2 1 28 28 H 1.09002 * 109.46981 * 186.39156 * 3 2 1 29 29 H 1.09004 * 109.47426 * 299.99303 * 5 4 3 30 30 H 1.08994 * 109.47857 * 60.00031 * 5 4 3 31 31 H 1.08993 * 109.47110 * 299.99948 * 6 5 4 32 32 H 1.09003 * 109.46597 * 59.99660 * 6 5 4 33 33 H 0.97002 * 120.00283 * 359.97438 * 9 7 6 34 34 H 1.08993 * 109.47228 * 299.99745 * 10 9 7 35 35 H 1.09003 * 109.47336 * 59.99982 * 10 9 7 36 36 H 1.09005 * 109.45405 * 298.70317 * 13 11 10 37 37 H 1.08994 * 109.46319 * 58.65942 * 13 11 10 38 38 H 1.08999 * 109.49940 * 301.40923 * 14 13 11 39 39 H 1.09001 * 109.49870 * 181.31426 * 14 13 11 40 40 H 1.09009 * 109.58673 * 185.57827 * 15 14 13 41 41 H 1.08999 * 109.70857 * 65.22507 * 15 14 13 42 42 H 0.97007 * 119.99368 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.58517 * 186.60517 * 25 16 15 44 44 H 1.08996 * 109.58716 * 66.18027 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1226 -0.5388 -1.2345 5 6 4.5471 -0.5838 -1.3375 6 6 4.9419 -1.1763 -2.6919 7 6 6.4442 -1.2233 -2.8009 8 8 7.1314 -0.8228 -1.8853 9 7 7.0240 -1.7103 -3.9157 10 6 8.4845 -1.7565 -4.0215 11 6 8.8793 -2.3488 -5.3758 12 1 8.4047 -3.3223 -5.4994 13 6 10.3999 -2.5095 -5.4394 14 6 10.7932 -3.1323 -6.7808 15 6 10.3572 -2.2031 -7.9181 16 7 8.9208 -1.9272 -7.7789 17 6 8.0635 -2.1475 -8.8238 18 1 7.0287 -2.3894 -8.6315 19 6 8.5246 -2.0598 -10.1302 20 7 9.6643 -1.4533 -10.3865 21 14 7.5277 -2.8025 -11.5244 22 1 6.1893 -2.1608 -11.5724 23 1 8.2322 -2.5764 -12.8119 24 1 7.3692 -4.2615 -11.2970 25 6 8.4216 -1.4108 -6.4971 26 1 -1.0500 0.0001 -0.0002 27 1 3.0095 -0.6088 0.8274 28 1 3.0088 1.0221 0.1144 29 1 4.9498 0.4254 -1.2508 30 1 4.9498 -1.2056 -0.5381 31 1 4.5393 -2.1855 -2.7782 32 1 4.5391 -0.5548 -3.4916 33 1 6.4744 -2.0310 -4.6478 34 1 8.8871 -0.7474 -3.9347 35 1 8.8872 -2.3784 -3.2220 36 1 10.8727 -1.5323 -5.3402 37 1 10.7310 -3.1568 -4.6275 38 1 10.3011 -4.0985 -6.8916 39 1 11.8741 -3.2679 -6.8161 40 1 10.5453 -2.6861 -8.8770 41 1 10.9157 -1.2687 -7.8639 42 1 9.9863 -1.3917 -11.2995 43 1 7.3325 -1.3710 -6.5185 44 1 8.8225 -0.4121 -6.3245 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756779043.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:19 Heat of formation + Delta-G solvation = -20.915344 kcal Electronic energy + Delta-G solvation = -22961.890882 eV Core-core repulsion = 19495.090575 eV Total energy + Delta-G solvation = -3466.800307 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.86819 -38.37253 -37.75906 -34.86652 -33.78535 -33.04516 -31.81074 -30.47060 -30.21855 -27.37634 -25.66581 -25.27797 -23.44031 -22.10815 -20.96479 -20.34758 -19.10786 -18.74692 -17.53160 -16.76332 -16.69185 -16.06602 -15.90454 -15.46643 -15.09334 -14.83843 -14.50533 -13.89446 -13.54255 -13.47330 -13.38983 -12.92194 -12.80796 -12.36285 -12.31673 -12.19569 -11.82978 -11.73179 -11.31158 -11.02920 -10.88473 -10.77387 -10.72447 -10.53343 -10.27228 -10.20795 -10.01470 -9.89536 -9.88088 -9.57662 -9.45077 -8.96924 -8.48739 -6.69878 -5.81619 -3.24903 2.11938 2.45242 2.61788 3.09916 3.35909 3.42175 3.42773 3.71296 4.23390 4.45733 4.59409 4.79773 4.88403 4.99518 5.03575 5.10538 5.26808 5.30227 5.41145 5.44402 5.52281 5.57785 5.59277 5.59954 5.80431 5.92555 5.97538 6.20959 6.30082 6.35003 6.47506 6.56628 6.67594 6.74708 6.77983 6.83342 6.93599 7.20822 7.37464 7.53073 7.64987 7.75686 8.20732 8.41970 9.18088 9.81512 10.38427 11.26643 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017144 B = 0.002707 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.803481 B =10339.989602 C =11744.468997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.192 4.192 3 C 0.174 3.826 4 O -0.386 6.386 5 C 0.079 3.921 6 C -0.142 4.142 7 C 0.517 3.483 8 O -0.551 6.551 9 N -0.721 5.721 10 C 0.127 3.873 11 C -0.118 4.118 12 H 0.073 0.927 13 C -0.100 4.100 14 C -0.142 4.142 15 C 0.169 3.831 16 N -0.591 5.591 17 C -0.255 4.255 18 H 0.064 0.936 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.903 3.097 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.154 3.846 26 H 0.222 0.778 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.405 0.595 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.086 0.914 41 H 0.018 0.982 42 H 0.255 0.745 43 H 0.050 0.950 44 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.467 -0.037 17.789 20.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.193 4.193 3 C 0.098 3.902 4 O -0.306 6.306 5 C 0.002 3.998 6 C -0.182 4.182 7 C 0.303 3.697 8 O -0.429 6.429 9 N -0.372 5.372 10 C 0.003 3.997 11 C -0.139 4.139 12 H 0.092 0.908 13 C -0.138 4.138 14 C -0.181 4.181 15 C 0.043 3.957 16 N -0.314 5.314 17 C -0.385 4.385 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.732 3.268 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.027 3.973 26 H 0.239 0.761 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.240 0.760 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.036 0.964 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -8.987 0.225 18.093 20.203 hybrid contribution -0.734 -0.432 -1.004 1.316 sum -9.721 -0.206 17.090 19.662 Atomic orbital electron populations 1.24984 0.95908 1.00366 0.98088 1.22580 0.93938 1.00849 1.01886 1.19049 0.84599 0.99075 0.87464 1.87877 1.21840 1.84377 1.36496 1.22160 0.79595 1.01140 0.96869 1.21474 0.92843 1.04650 0.99205 1.20303 0.89868 0.77258 0.82294 1.90699 1.65460 1.48005 1.38765 1.46063 1.08590 1.63865 1.18703 1.21476 0.78896 1.01433 0.97881 1.21961 0.97346 1.00829 0.93731 0.90849 1.21339 0.94262 1.00451 0.97724 1.22168 0.99058 1.00404 0.96460 1.20795 0.83583 0.94985 0.96324 1.44029 1.04175 1.74318 1.08845 1.19111 0.93106 1.41463 0.84806 0.91792 1.25054 0.97768 0.99165 0.97589 1.70029 1.22067 1.43242 1.19218 0.86373 0.79486 0.79342 0.81570 1.20863 1.21628 1.21031 1.20902 0.96954 0.93456 0.86011 0.76149 0.90664 0.90610 0.91952 0.92056 0.87921 0.87733 0.75984 0.91534 0.91963 0.92474 0.93450 0.92747 0.93176 0.89599 0.96426 0.93548 0.93124 0.96359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 19.25 29.55 0.57 -0.85 16 2 C -0.19 -1.85 13.73 -37.12 -0.51 -2.36 16 3 C 0.17 1.49 6.41 34.37 0.22 1.71 16 4 O -0.39 -4.13 10.30 -35.23 -0.36 -4.49 16 5 C 0.08 0.79 5.23 37.16 0.19 0.98 16 6 C -0.14 -1.38 6.07 -27.88 -0.17 -1.55 16 7 C 0.52 6.58 7.83 -10.99 -0.09 6.50 16 8 O -0.55 -8.84 15.98 5.55 0.09 -8.75 16 9 N -0.72 -9.01 5.33 -60.30 -0.32 -9.33 16 10 C 0.13 1.78 5.07 -4.04 -0.02 1.76 16 11 C -0.12 -1.88 2.38 -90.50 -0.21 -2.09 16 12 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 13 C -0.10 -1.60 5.17 -26.69 -0.14 -1.74 16 14 C -0.14 -2.62 6.08 -26.62 -0.16 -2.78 16 15 C 0.17 3.94 5.30 -3.71 -0.02 3.92 16 16 N -0.59 -14.30 2.99 -172.32 -0.52 -14.81 16 17 C -0.26 -6.79 9.58 -15.06 -0.14 -6.94 16 18 H 0.06 1.65 7.88 -52.49 -0.41 1.24 16 19 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 20 N -0.90 -25.83 11.20 55.49 0.62 -25.20 16 21 Si 0.90 21.29 29.59 -169.99 -5.03 16.26 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.15 3.01 5.60 -3.71 -0.02 2.99 16 26 H 0.22 0.93 7.80 -54.09 -0.42 0.51 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 30 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.41 4.50 7.70 -40.82 -0.31 4.19 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.09 2.25 6.06 -51.92 -0.31 1.94 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.05 0.94 7.13 -51.93 -0.37 0.57 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 366.25 15.07 5.52 5.52 Total: -1.00 -32.08 366.25 -7.89 -39.98 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.31 Total: 1.29 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -0.59 Total: -0.46 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: -0.22 Total: -49.35 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.27 Total: -13.24 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.08 -7.89 -39.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756779043.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.060 kcal (2) G-P(sol) polarization free energy of solvation -32.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds