Wall clock time and date at job start Tue Mar 31 2020 08:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 O 1.42903 * 109.47325 * 66.38809 * 3 2 1 5 5 C 1.42892 * 113.99752 * 180.02562 * 4 3 2 6 6 C 1.53010 * 109.46876 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47211 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99690 * 0.02562 * 7 6 5 9 9 N 1.34768 * 119.99852 * 180.02562 * 7 6 5 10 10 C 1.46501 * 119.99946 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47365 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.49753 * 304.93676 * 11 10 9 13 13 C 1.53038 * 109.50185 * 184.84137 * 11 10 9 14 14 C 1.53036 * 109.54015 * 178.68581 * 13 11 10 15 15 C 1.53186 * 109.31504 * 61.36345 * 14 13 11 16 16 N 1.46928 * 108.77549 * 305.36464 * 15 14 13 17 17 C 1.36943 * 120.63344 * 233.63227 * 16 15 14 18 18 H 1.07997 * 119.99993 * 151.80402 * 17 16 15 19 19 C 1.38814 * 119.99567 * 331.80705 * 17 16 15 20 20 N 1.31619 * 120.00048 * 343.08671 * 19 17 16 21 21 Si 1.86804 * 119.99834 * 163.09039 * 19 17 16 22 22 H 1.48504 * 109.46993 * 59.99321 * 21 19 17 23 23 H 1.48498 * 109.47174 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46833 * 300.00016 * 21 19 17 25 25 C 1.46928 * 118.73702 * 53.60864 * 16 15 14 26 26 H 4.38453 * 5.44387 * 180.02562 * 4 1 2 27 27 H 1.09003 * 109.46880 * 306.38396 * 3 2 1 28 28 H 1.09002 * 109.46981 * 186.39156 * 3 2 1 29 29 H 1.09004 * 109.47426 * 299.99303 * 5 4 3 30 30 H 1.08994 * 109.47857 * 60.00031 * 5 4 3 31 31 H 1.08993 * 109.47110 * 299.99948 * 6 5 4 32 32 H 1.09003 * 109.46597 * 59.99660 * 6 5 4 33 33 H 0.97002 * 120.00283 * 359.97438 * 9 7 6 34 34 H 1.08993 * 109.47228 * 299.99745 * 10 9 7 35 35 H 1.09003 * 109.47336 * 59.99982 * 10 9 7 36 36 H 1.09005 * 109.45405 * 298.70317 * 13 11 10 37 37 H 1.08994 * 109.46319 * 58.65942 * 13 11 10 38 38 H 1.08999 * 109.49940 * 301.40923 * 14 13 11 39 39 H 1.09001 * 109.49870 * 181.31426 * 14 13 11 40 40 H 1.09009 * 109.58673 * 185.57827 * 15 14 13 41 41 H 1.08999 * 109.70857 * 65.22507 * 15 14 13 42 42 H 0.97007 * 119.99368 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.58517 * 186.60517 * 25 16 15 44 44 H 1.08996 * 109.58716 * 66.18027 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1226 -0.5388 -1.2345 5 6 4.5471 -0.5838 -1.3375 6 6 4.9419 -1.1763 -2.6919 7 6 6.4442 -1.2233 -2.8009 8 8 7.1314 -0.8228 -1.8853 9 7 7.0240 -1.7103 -3.9157 10 6 8.4845 -1.7565 -4.0215 11 6 8.8793 -2.3488 -5.3758 12 1 8.4047 -3.3223 -5.4994 13 6 10.3999 -2.5095 -5.4394 14 6 10.7932 -3.1323 -6.7808 15 6 10.3572 -2.2031 -7.9181 16 7 8.9208 -1.9272 -7.7789 17 6 8.0635 -2.1475 -8.8238 18 1 7.0287 -2.3894 -8.6315 19 6 8.5246 -2.0598 -10.1302 20 7 9.6643 -1.4533 -10.3865 21 14 7.5277 -2.8025 -11.5244 22 1 6.1893 -2.1608 -11.5724 23 1 8.2322 -2.5764 -12.8119 24 1 7.3692 -4.2615 -11.2970 25 6 8.4216 -1.4108 -6.4971 26 1 -1.0500 0.0001 -0.0002 27 1 3.0095 -0.6088 0.8274 28 1 3.0088 1.0221 0.1144 29 1 4.9498 0.4254 -1.2508 30 1 4.9498 -1.2056 -0.5381 31 1 4.5393 -2.1855 -2.7782 32 1 4.5391 -0.5548 -3.4916 33 1 6.4744 -2.0310 -4.6478 34 1 8.8871 -0.7474 -3.9347 35 1 8.8872 -2.3784 -3.2220 36 1 10.8727 -1.5323 -5.3402 37 1 10.7310 -3.1568 -4.6275 38 1 10.3011 -4.0985 -6.8916 39 1 11.8741 -3.2679 -6.8161 40 1 10.5453 -2.6861 -8.8770 41 1 10.9157 -1.2687 -7.8639 42 1 9.9863 -1.3917 -11.2995 43 1 7.3325 -1.3710 -6.5185 44 1 8.8225 -0.4121 -6.3245 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756779043.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:18 Heat of formation + Delta-G solvation = -41.473973 kcal Electronic energy + Delta-G solvation = -22962.782371 eV Core-core repulsion = 19495.090575 eV Total energy + Delta-G solvation = -3467.691797 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.92166 -39.45017 -38.94474 -36.25561 -34.66763 -34.43386 -32.75992 -32.28086 -31.58586 -28.10194 -27.25055 -26.78763 -24.41420 -23.76930 -22.42511 -21.43351 -20.54775 -19.40350 -18.68342 -18.31822 -17.46897 -17.01160 -16.99154 -16.72528 -16.46020 -15.82925 -15.80053 -15.51672 -15.04498 -14.60107 -14.48349 -14.42299 -14.02083 -13.75020 -13.54812 -13.52552 -13.01051 -12.84033 -12.65655 -12.49626 -12.43637 -12.29570 -11.97416 -11.80999 -11.56754 -11.54301 -11.44917 -11.34445 -11.09781 -10.88784 -10.56819 -10.51429 -10.05163 -8.66309 -7.85740 -5.31662 1.44789 1.48158 1.50509 1.56899 1.62252 1.82218 2.19055 2.52181 3.00534 3.29076 3.60063 3.62294 3.76009 4.00858 4.02378 4.07100 4.07431 4.23034 4.31961 4.42147 4.45110 4.52257 4.59711 4.64668 4.78294 4.81649 4.84927 4.90614 4.93235 5.02288 5.03346 5.12009 5.24767 5.35000 5.40654 5.50222 5.58523 5.68033 5.79667 6.07781 6.40171 6.54496 6.59716 7.16195 7.21715 7.87809 8.39795 9.20365 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017144 B = 0.002707 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.803481 B =10339.989602 C =11744.468997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.239 4.239 3 C 0.167 3.833 4 O -0.402 6.402 5 C 0.081 3.919 6 C -0.134 4.134 7 C 0.518 3.482 8 O -0.585 6.585 9 N -0.718 5.718 10 C 0.137 3.863 11 C -0.100 4.100 12 H 0.077 0.923 13 C -0.098 4.098 14 C -0.130 4.130 15 C 0.172 3.828 16 N -0.610 5.610 17 C -0.261 4.261 18 H 0.071 0.929 19 C -0.054 4.054 20 N -0.937 5.937 21 Si 0.967 3.033 22 H -0.274 1.274 23 H -0.298 1.298 24 H -0.277 1.277 25 C 0.151 3.849 26 H 0.253 0.747 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.413 0.587 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.050 0.950 41 H -0.008 1.008 42 H 0.249 0.751 43 H 0.059 0.941 44 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.028 -1.079 19.186 22.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.239 4.239 3 C 0.092 3.908 4 O -0.322 6.322 5 C 0.005 3.995 6 C -0.174 4.174 7 C 0.306 3.694 8 O -0.466 6.466 9 N -0.369 5.369 10 C 0.013 3.987 11 C -0.121 4.121 12 H 0.096 0.904 13 C -0.136 4.136 14 C -0.169 4.169 15 C 0.047 3.953 16 N -0.333 5.333 17 C -0.391 4.391 18 H 0.089 0.911 19 C -0.249 4.249 20 N -0.583 5.583 21 Si 0.795 3.205 22 H -0.200 1.200 23 H -0.224 1.224 24 H -0.203 1.203 25 C 0.026 3.974 26 H 0.269 0.731 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.139 0.861 32 H 0.133 0.867 33 H 0.250 0.750 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.010 0.990 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -10.575 -0.827 19.513 22.209 hybrid contribution -0.297 -0.056 -1.397 1.429 sum -10.872 -0.883 18.116 21.146 Atomic orbital electron populations 1.25866 0.96843 0.98827 0.96412 1.23115 0.94919 1.02391 1.03493 1.19243 0.84527 0.99951 0.87097 1.87835 1.21951 1.84689 1.37723 1.22111 0.79479 1.00935 0.97002 1.21443 0.90486 1.05978 0.99499 1.20739 0.90925 0.76185 0.81540 1.90687 1.66480 1.49497 1.39941 1.46022 1.08102 1.63733 1.19064 1.21262 0.79879 1.00840 0.96714 1.21717 0.97356 0.99890 0.93099 0.90427 1.21339 0.94228 1.00862 0.97132 1.21996 1.00175 0.98983 0.95765 1.20628 0.83415 0.94510 0.96770 1.44308 1.04216 1.74895 1.09861 1.19509 0.93739 1.40198 0.85657 0.91097 1.25826 0.98984 1.00096 0.99972 1.70196 1.23882 1.45096 1.19111 0.85354 0.78180 0.78693 0.78294 1.19990 1.22415 1.20341 1.21046 0.97419 0.93602 0.85369 0.73067 0.89299 0.89527 0.92421 0.92015 0.86101 0.86663 0.75023 0.92553 0.90902 0.92721 0.90141 0.92808 0.91327 0.93128 0.99006 0.94236 0.92299 0.97701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 19.25 74.32 1.43 -0.90 16 2 C -0.24 -4.36 13.73 31.12 0.43 -3.93 16 3 C 0.17 2.72 6.41 70.18 0.45 3.17 16 4 O -0.40 -8.14 10.30 -148.98 -1.53 -9.67 16 5 C 0.08 1.52 5.23 71.99 0.38 1.90 16 6 C -0.13 -2.36 6.07 29.85 0.18 -2.18 16 7 C 0.52 12.30 7.83 87.66 0.69 12.99 16 8 O -0.59 -18.06 15.98 -3.04 -0.05 -18.11 16 9 N -0.72 -16.42 5.33 -463.07 -2.47 -18.88 16 10 C 0.14 3.54 5.07 86.38 0.44 3.98 16 11 C -0.10 -2.98 2.38 -10.72 -0.03 -3.00 16 12 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 13 C -0.10 -2.91 5.17 30.62 0.16 -2.75 16 14 C -0.13 -4.65 6.08 30.67 0.19 -4.46 16 15 C 0.17 8.20 5.30 86.36 0.46 8.66 16 16 N -0.61 -29.61 2.99 -699.09 -2.09 -31.70 16 17 C -0.26 -13.90 9.58 84.03 0.81 -13.10 16 18 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 19 C -0.05 -2.95 4.92 84.86 0.42 -2.53 16 20 N -0.94 -55.29 11.20 21.65 0.24 -55.05 16 21 Si 0.97 44.13 29.59 68.60 2.03 46.16 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 23 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 25 C 0.15 5.83 5.60 86.36 0.48 6.31 16 26 H 0.25 1.42 7.80 -4.42 -0.03 1.39 16 27 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.06 1.11 8.10 -2.38 -0.02 1.09 16 30 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 31 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.41 8.18 7.70 -92.71 -0.71 7.47 16 34 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 40 H 0.05 2.75 6.06 -2.38 -0.01 2.73 16 41 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 42 H 0.25 14.30 8.31 -92.70 -0.77 13.52 16 43 H 0.06 2.13 7.13 -2.39 -0.02 2.11 16 44 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 Total: -1.00 -70.17 366.25 2.86 -67.32 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.26 Total: 15.79 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 6.47 Total: 4.15 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -4.32 Total: -105.64 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -1.58 Total: -27.78 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -70.17 2.86 -67.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756779043.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.841 kcal (2) G-P(sol) polarization free energy of solvation -70.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds