Wall clock time and date at job start Tue Mar 31 2020 06:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47016 * 2 1 4 4 N 1.46507 * 109.46934 * 180.02562 * 3 2 1 5 5 N 1.39932 * 125.73970 * 270.16430 * 4 3 2 6 6 C 1.30436 * 108.91486 * 180.25349 * 5 4 3 7 7 C 1.50694 * 125.99083 * 179.80627 * 6 5 4 8 8 C 1.41346 * 108.01158 * 359.76659 * 6 5 4 9 9 C 1.47281 * 126.42254 * 179.97438 * 8 6 5 10 10 O 1.21525 * 120.00305 * 270.01899 * 9 8 6 11 11 O 1.34755 * 120.00242 * 90.02556 * 9 8 6 12 12 C 1.45195 * 117.00167 * 179.97438 * 11 9 8 13 13 C 1.53008 * 109.47014 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.47050 * 180.02562 * 13 12 11 15 15 C 1.50693 * 109.46893 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00637 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99664 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00178 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99890 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46962 * 60.00199 * 19 17 15 21 21 H 1.48500 * 109.46949 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47212 * 300.00172 * 19 17 15 23 23 C 1.34217 * 125.74300 * 90.00172 * 4 3 2 24 24 C 1.50703 * 126.29755 * 0.02562 * 23 4 3 25 25 H 1.09003 * 109.47073 * 299.99783 * 1 2 3 26 26 H 1.08997 * 109.47266 * 59.99967 * 1 2 3 27 27 H 1.09003 * 109.47225 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46644 * 240.00530 * 2 1 3 29 29 H 1.08998 * 109.47178 * 120.00575 * 2 1 3 30 30 H 1.08995 * 109.47367 * 60.00273 * 3 2 1 31 31 H 1.08997 * 109.47130 * 300.00117 * 3 2 1 32 32 H 1.09002 * 109.46923 * 269.95559 * 7 6 5 33 33 H 1.09000 * 109.47422 * 29.95239 * 7 6 5 34 34 H 1.08998 * 109.47223 * 149.95788 * 7 6 5 35 35 H 1.09000 * 109.47513 * 299.99766 * 12 11 9 36 36 H 1.09002 * 109.47502 * 60.00362 * 12 11 9 37 37 H 1.08994 * 109.46987 * 299.99783 * 13 12 11 38 38 H 1.09000 * 109.46890 * 60.00360 * 13 12 11 39 39 H 1.09005 * 109.46694 * 300.00157 * 14 13 12 40 40 H 1.09000 * 109.46872 * 59.99623 * 14 13 12 41 41 H 0.97004 * 119.99892 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.47152 * 269.71277 * 24 23 4 43 43 H 1.09001 * 109.46980 * 149.71378 * 24 23 4 44 44 H 1.09004 * 109.47113 * 29.71359 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 7 4.3229 1.4390 1.1348 6 6 5.5712 1.4456 0.7568 7 6 6.7722 1.4489 1.6671 8 6 5.5999 1.4481 -0.6564 9 6 6.8025 1.4558 -1.5066 10 8 7.2934 2.5114 -1.8553 11 8 7.3585 0.2924 -1.8980 12 6 8.5417 0.3760 -2.7353 13 6 9.0259 -1.0349 -3.0763 14 6 10.2732 -0.9468 -3.9581 15 6 10.7497 -2.3363 -4.2944 16 1 10.2161 -3.1963 -3.9174 17 6 11.8663 -2.5098 -5.0844 18 7 12.5157 -1.4627 -5.5440 19 14 12.4574 -4.2322 -5.5008 20 1 11.3869 -4.9607 -6.2277 21 1 13.6671 -4.1467 -6.3578 22 1 12.7877 -4.9585 -4.2483 23 6 4.2886 1.4426 -1.0903 24 6 3.8233 1.4434 -2.5237 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 7.0575 2.4774 1.8883 33 1 6.5263 0.9325 2.5949 34 1 7.6014 0.9393 1.1764 35 1 8.2993 0.9086 -3.6549 36 1 9.3274 0.9110 -2.2018 37 1 9.2683 -1.5679 -2.1569 38 1 8.2402 -1.5696 -3.6100 39 1 10.0311 -0.4136 -4.8775 40 1 11.0587 -0.4122 -3.4240 41 1 13.3015 -1.5847 -6.0996 42 1 3.7157 0.4160 -2.8713 43 1 4.5554 1.9617 -3.1430 44 1 2.8624 1.9532 -2.5935 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759855800.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:37 Heat of formation + Delta-G solvation = -44.635678 kcal Electronic energy + Delta-G solvation = -23085.383054 eV Core-core repulsion = 19617.554155 eV Total energy + Delta-G solvation = -3467.828898 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.71909 -39.71302 -36.31649 -35.94192 -33.93564 -33.33781 -32.07164 -31.55046 -29.19575 -28.08526 -26.89425 -25.88799 -23.68219 -22.55009 -21.88895 -20.35845 -19.89247 -19.67126 -17.60485 -16.95845 -16.38013 -16.01455 -15.86622 -15.64329 -15.26227 -14.46297 -14.28238 -14.04506 -13.78009 -13.55946 -13.41832 -13.18381 -12.79286 -12.75473 -12.61818 -12.36681 -12.19586 -12.13404 -11.97255 -11.86114 -11.72104 -11.33445 -10.98035 -10.92634 -10.67071 -10.59677 -10.31795 -10.31501 -9.67778 -9.48090 -9.38384 -9.15755 -8.72816 -8.36642 -6.01625 -4.04551 1.44572 2.02737 2.25052 2.32208 3.19834 3.33633 3.37891 3.40747 4.08506 4.19484 4.32141 4.44858 4.48038 4.59290 4.71461 4.83504 4.95631 5.08735 5.13509 5.17397 5.21308 5.34191 5.46345 5.48661 5.49315 5.52307 5.54460 5.63418 5.67880 5.70815 5.74243 5.80553 6.06016 6.30286 6.56156 6.58090 6.63686 6.88372 7.02158 7.42394 7.62627 7.74198 7.96740 8.03840 8.38380 9.01546 9.59507 11.09769 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020924 B = 0.002666 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.853366 B =10501.472324 C =11031.977683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.130 3.870 4 N -0.358 5.358 5 N -0.296 5.296 6 C 0.122 3.878 7 C -0.080 4.080 8 C -0.265 4.265 9 C 0.545 3.455 10 O -0.504 6.504 11 O -0.350 6.350 12 C 0.066 3.934 13 C -0.108 4.108 14 C 0.024 3.976 15 C -0.521 4.521 16 H 0.057 0.943 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.137 3.863 24 C -0.101 4.101 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.019 0.981 40 H 0.020 0.980 41 H 0.262 0.738 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.862 6.359 11.663 27.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C 0.009 3.991 4 N -0.137 5.137 5 N -0.117 5.117 6 C -0.045 4.045 7 C -0.138 4.138 8 C -0.278 4.278 9 C 0.387 3.613 10 O -0.392 6.392 11 O -0.266 6.266 12 C -0.007 4.007 13 C -0.146 4.146 14 C -0.013 4.013 15 C -0.560 4.560 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C 0.007 3.993 24 C -0.159 4.159 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.037 0.963 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -24.476 6.711 12.428 28.259 hybrid contribution 0.990 -0.795 -1.055 1.651 sum -23.486 5.915 11.373 26.757 Atomic orbital electron populations 1.21696 0.94085 1.02700 1.02218 1.21948 0.96802 0.95496 1.03841 1.21885 0.73578 0.98895 1.04761 1.48262 1.06467 1.55936 1.03010 1.77107 1.00870 1.26638 1.07071 1.22299 0.93797 0.96730 0.91650 1.20306 0.92107 1.03619 0.97789 1.19036 0.90836 1.24714 0.93185 1.20073 0.82184 0.82167 0.76914 1.90835 1.62119 1.32772 1.53449 1.86671 1.43361 1.33474 1.63122 1.23525 0.83242 1.01303 0.92641 1.21758 1.00006 0.91808 1.01016 1.19049 0.90498 0.97671 0.94069 1.21138 1.11366 0.92289 1.31170 0.92503 1.25027 0.96591 0.96925 0.95911 1.69956 1.19309 1.29203 1.34911 0.86613 0.78123 0.84611 0.78393 1.20212 1.21278 1.20175 1.21277 0.89437 0.97402 0.91222 1.20627 1.02665 1.04397 0.88238 0.92238 0.92259 0.91779 0.91041 0.90689 0.88322 0.88659 0.89843 0.90089 0.89998 0.91531 0.91439 0.92143 0.92216 0.96250 0.96200 0.92850 0.88923 0.89167 0.90337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.91 37.16 0.37 -0.24 16 2 C -0.14 -0.86 6.26 -26.73 -0.17 -1.03 16 3 C 0.13 0.87 6.21 -4.04 -0.03 0.84 16 4 N -0.36 -3.94 3.58 -56.59 -0.20 -4.14 16 5 N -0.30 -3.92 12.50 33.90 0.42 -3.49 16 6 C 0.12 1.68 7.27 -82.01 -0.60 1.09 16 7 C -0.08 -0.88 10.28 36.00 0.37 -0.51 16 8 C -0.26 -3.92 6.00 -105.08 -0.63 -4.55 16 9 C 0.55 9.31 7.12 34.41 0.24 9.55 16 10 O -0.50 -9.75 16.90 -19.29 -0.33 -10.08 16 11 O -0.35 -6.27 10.23 -40.64 -0.42 -6.68 16 12 C 0.07 1.25 5.48 37.16 0.20 1.45 16 13 C -0.11 -2.28 5.53 -26.72 -0.15 -2.43 16 14 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 15 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 19 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.14 1.65 7.01 -81.59 -0.57 1.08 16 24 C -0.10 -0.87 9.93 36.01 0.36 -0.51 16 25 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 26 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.10 0.42 7.01 -51.93 -0.36 0.06 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.94 8.01 -51.93 -0.42 0.52 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.09 0.87 7.96 -51.93 -0.41 0.46 16 44 H 0.08 0.45 7.04 -51.93 -0.37 0.08 16 LS Contribution 376.08 15.07 5.67 5.67 Total: -1.00 -33.96 376.08 -7.72 -41.68 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -7.44 Total: -5.09 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -1.14 Total: -8.30 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.96 Total: -33.79 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.74 Total: -16.76 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.96 -7.72 -41.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759855800.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.955 kcal (2) G-P(sol) polarization free energy of solvation -33.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds