Wall clock time and date at job start Tue Mar 31 2020 06:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47016 * 2 1 4 4 N 1.46507 * 109.46934 * 180.02562 * 3 2 1 5 5 N 1.39932 * 125.73970 * 270.16430 * 4 3 2 6 6 C 1.30436 * 108.91486 * 180.25349 * 5 4 3 7 7 C 1.50694 * 125.99083 * 179.80627 * 6 5 4 8 8 C 1.41346 * 108.01158 * 359.76659 * 6 5 4 9 9 C 1.47281 * 126.42254 * 179.97438 * 8 6 5 10 10 O 1.21525 * 120.00305 * 270.01899 * 9 8 6 11 11 O 1.34755 * 120.00242 * 90.02556 * 9 8 6 12 12 C 1.45195 * 117.00167 * 179.97438 * 11 9 8 13 13 C 1.53008 * 109.47014 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.47050 * 180.02562 * 13 12 11 15 15 C 1.50693 * 109.46893 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00637 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99664 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00178 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99890 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46962 * 60.00199 * 19 17 15 21 21 H 1.48500 * 109.46949 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47212 * 300.00172 * 19 17 15 23 23 C 1.34217 * 125.74300 * 90.00172 * 4 3 2 24 24 C 1.50703 * 126.29755 * 0.02562 * 23 4 3 25 25 H 1.09003 * 109.47073 * 299.99783 * 1 2 3 26 26 H 1.08997 * 109.47266 * 59.99967 * 1 2 3 27 27 H 1.09003 * 109.47225 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46644 * 240.00530 * 2 1 3 29 29 H 1.08998 * 109.47178 * 120.00575 * 2 1 3 30 30 H 1.08995 * 109.47367 * 60.00273 * 3 2 1 31 31 H 1.08997 * 109.47130 * 300.00117 * 3 2 1 32 32 H 1.09002 * 109.46923 * 269.95559 * 7 6 5 33 33 H 1.09000 * 109.47422 * 29.95239 * 7 6 5 34 34 H 1.08998 * 109.47223 * 149.95788 * 7 6 5 35 35 H 1.09000 * 109.47513 * 299.99766 * 12 11 9 36 36 H 1.09002 * 109.47502 * 60.00362 * 12 11 9 37 37 H 1.08994 * 109.46987 * 299.99783 * 13 12 11 38 38 H 1.09000 * 109.46890 * 60.00360 * 13 12 11 39 39 H 1.09005 * 109.46694 * 300.00157 * 14 13 12 40 40 H 1.09000 * 109.46872 * 59.99623 * 14 13 12 41 41 H 0.97004 * 119.99892 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.47152 * 269.71277 * 24 23 4 43 43 H 1.09001 * 109.46980 * 149.71378 * 24 23 4 44 44 H 1.09004 * 109.47113 * 29.71359 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 7 4.3229 1.4390 1.1348 6 6 5.5712 1.4456 0.7568 7 6 6.7722 1.4489 1.6671 8 6 5.5999 1.4481 -0.6564 9 6 6.8025 1.4558 -1.5066 10 8 7.2934 2.5114 -1.8553 11 8 7.3585 0.2924 -1.8980 12 6 8.5417 0.3760 -2.7353 13 6 9.0259 -1.0349 -3.0763 14 6 10.2732 -0.9468 -3.9581 15 6 10.7497 -2.3363 -4.2944 16 1 10.2161 -3.1963 -3.9174 17 6 11.8663 -2.5098 -5.0844 18 7 12.5157 -1.4627 -5.5440 19 14 12.4574 -4.2322 -5.5008 20 1 11.3869 -4.9607 -6.2277 21 1 13.6671 -4.1467 -6.3578 22 1 12.7877 -4.9585 -4.2483 23 6 4.2886 1.4426 -1.0903 24 6 3.8233 1.4434 -2.5237 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 7.0575 2.4774 1.8883 33 1 6.5263 0.9325 2.5949 34 1 7.6014 0.9393 1.1764 35 1 8.2993 0.9086 -3.6549 36 1 9.3274 0.9110 -2.2018 37 1 9.2683 -1.5679 -2.1569 38 1 8.2402 -1.5696 -3.6100 39 1 10.0311 -0.4136 -4.8775 40 1 11.0587 -0.4122 -3.4240 41 1 13.3015 -1.5847 -6.0996 42 1 3.7157 0.4160 -2.8713 43 1 4.5554 1.9617 -3.1430 44 1 2.8624 1.9532 -2.5935 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759855800.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:37 Heat of formation + Delta-G solvation = -63.421301 kcal Electronic energy + Delta-G solvation = -23086.197659 eV Core-core repulsion = 19617.554155 eV Total energy + Delta-G solvation = -3468.643504 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.67854 -41.09669 -37.75676 -36.63949 -35.90735 -34.08963 -33.70098 -32.77025 -29.95742 -29.34535 -28.41928 -26.65539 -25.34168 -23.72633 -22.61026 -22.15088 -21.07588 -20.55376 -18.87898 -18.54481 -17.93411 -17.49427 -16.90920 -16.54034 -16.45109 -15.93400 -15.58305 -14.97705 -14.77502 -14.56200 -14.32029 -14.18822 -14.08132 -13.78474 -13.73203 -13.48908 -13.39034 -13.22408 -12.97221 -12.80869 -12.78934 -12.53100 -12.41960 -12.22302 -12.09974 -12.05861 -11.77936 -11.67894 -11.41634 -11.39862 -11.23082 -10.55327 -10.26037 -9.73064 -8.20261 -6.31721 0.52143 0.98140 1.11860 1.29302 1.42349 1.45536 1.53452 1.90567 2.42745 3.13438 3.31661 3.40489 3.75150 3.84494 3.88079 3.96550 4.00978 4.07498 4.19434 4.24145 4.41956 4.43449 4.48172 4.55576 4.63844 4.64382 4.77642 4.80868 4.81181 4.85148 4.92613 4.95753 5.08578 5.12023 5.15160 5.32979 5.36465 5.42227 5.51199 5.65525 5.81500 5.84646 6.20662 6.47096 6.65398 6.83850 7.37534 8.91696 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020924 B = 0.002666 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.853366 B =10501.472324 C =11031.977683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.119 3.881 4 N -0.350 5.350 5 N -0.313 5.313 6 C 0.111 3.889 7 C -0.080 4.080 8 C -0.308 4.308 9 C 0.555 3.445 10 O -0.532 6.532 11 O -0.351 6.351 12 C 0.075 3.925 13 C -0.093 4.093 14 C 0.027 3.973 15 C -0.544 4.544 16 H 0.064 0.936 17 C -0.001 4.001 18 N -0.933 5.933 19 Si 0.968 3.032 20 H -0.265 1.265 21 H -0.284 1.284 22 H -0.266 1.266 23 C 0.148 3.852 24 C -0.102 4.102 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.107 0.893 31 H 0.126 0.874 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.067 0.933 39 H -0.002 1.002 40 H -0.003 1.003 41 H 0.265 0.735 42 H 0.106 0.894 43 H 0.077 0.923 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.064 5.439 11.772 29.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C 0.000 4.000 4 N -0.129 5.129 5 N -0.134 5.134 6 C -0.055 4.055 7 C -0.138 4.138 8 C -0.321 4.321 9 C 0.398 3.602 10 O -0.421 6.421 11 O -0.267 6.267 12 C 0.002 3.998 13 C -0.130 4.130 14 C -0.010 4.010 15 C -0.581 4.581 16 H 0.082 0.918 17 C -0.199 4.199 18 N -0.573 5.573 19 Si 0.792 3.208 20 H -0.190 1.190 21 H -0.209 1.209 22 H -0.191 1.191 23 C 0.016 3.984 24 C -0.160 4.160 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.125 0.875 31 H 0.144 0.856 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.017 0.983 40 H 0.016 0.984 41 H 0.073 0.927 42 H 0.124 0.876 43 H 0.096 0.904 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -26.719 5.785 12.567 30.088 hybrid contribution 1.569 -0.467 -1.066 1.953 sum -25.150 5.318 11.500 28.162 Atomic orbital electron populations 1.21671 0.92300 1.03024 1.03220 1.21886 0.98193 0.94723 1.02697 1.22346 0.71070 0.99782 1.06756 1.48648 1.07768 1.54302 1.02143 1.77053 1.00842 1.27203 1.08314 1.22629 0.94639 0.96665 0.91593 1.20373 0.91145 1.04297 0.98034 1.19113 0.90995 1.28482 0.93534 1.20430 0.82276 0.81258 0.76224 1.90812 1.63112 1.33525 1.54673 1.86662 1.42777 1.34279 1.62949 1.23215 0.83851 0.99812 0.92961 1.21455 0.98092 0.93223 1.00250 1.18928 0.91949 0.96399 0.93762 1.21585 1.11817 0.93392 1.31346 0.91761 1.25999 0.96728 1.01458 0.95672 1.70093 1.19851 1.31734 1.35621 0.85457 0.77731 0.79130 0.78476 1.19020 1.20908 1.19123 1.21728 0.88668 0.95239 0.92814 1.20795 1.03978 1.05558 0.85668 0.91723 0.90778 0.91831 0.91363 0.92705 0.87464 0.85577 0.88993 0.88463 0.90847 0.91498 0.91762 0.91685 0.91460 0.98313 0.98440 0.92672 0.87585 0.90413 0.86760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.91 71.98 0.71 -0.08 16 2 C -0.14 -1.37 6.26 30.59 0.19 -1.18 16 3 C 0.12 1.28 6.21 86.38 0.54 1.81 16 4 N -0.35 -7.12 3.58 -332.96 -1.19 -8.31 16 5 N -0.31 -8.03 12.50 -46.65 -0.58 -8.61 16 6 C 0.11 3.04 7.27 43.53 0.32 3.36 16 7 C -0.08 -1.78 10.28 71.23 0.73 -1.04 16 8 C -0.31 -9.07 6.00 -20.16 -0.12 -9.19 16 9 C 0.55 19.14 7.12 70.20 0.50 19.64 16 10 O -0.53 -20.98 16.90 19.76 0.33 -20.65 16 11 O -0.35 -12.59 10.23 -56.66 -0.58 -13.17 16 12 C 0.08 2.88 5.48 71.98 0.39 3.28 16 13 C -0.09 -3.91 5.53 30.60 0.17 -3.74 16 14 C 0.03 1.42 4.97 29.85 0.15 1.57 16 15 C -0.54 -30.88 9.11 25.60 0.23 -30.65 16 16 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 17 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 18 N -0.93 -56.88 13.29 21.45 0.28 -56.60 16 19 Si 0.97 44.07 29.54 68.60 2.03 46.10 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 23 C 0.15 3.36 7.01 42.17 0.30 3.65 16 24 C -0.10 -1.52 9.93 71.24 0.71 -0.82 16 25 H 0.06 0.30 8.14 -2.39 -0.02 0.29 16 26 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 27 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 30 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.13 0.60 7.01 -2.39 -0.02 0.58 16 32 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 1.72 8.01 -2.39 -0.02 1.70 16 35 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.06 2.49 8.14 -2.39 -0.02 2.48 16 37 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 39 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 40 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 41 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 42 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.08 1.40 7.96 -2.39 -0.02 1.39 16 44 H 0.11 0.86 7.04 -2.38 -0.02 0.84 16 Total: -1.00 -73.83 376.08 6.53 -67.30 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 0.96 Total: 6.91 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 5.28 Total: -12.98 kcal Atomic # 7 Polarization: -72.03 SS G_CDS: -1.49 Total: -73.52 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -0.25 Total: -33.82 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -73.83 6.53 -67.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759855800.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.877 kcal (2) G-P(sol) polarization free energy of solvation -73.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds