Wall clock time and date at job start Tue Mar 31 2020 06:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.47134 * 2 1 4 4 H 1.09001 * 109.46922 * 305.00135 * 3 2 1 5 5 C 1.53006 * 109.47164 * 64.99887 * 3 2 1 6 6 N 1.46496 * 109.47194 * 184.99801 * 3 2 1 7 7 N 1.28469 * 124.88088 * 300.02661 * 6 3 2 8 8 C 1.31851 * 110.06260 * 179.97438 * 7 6 3 9 9 C 1.47584 * 126.52194 * 179.97438 * 8 7 6 10 10 O 1.21497 * 120.00033 * 180.02562 * 9 8 7 11 11 O 1.34730 * 120.00103 * 0.02719 * 9 8 7 12 12 C 1.45197 * 116.99673 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.46789 * 179.97438 * 12 11 9 14 14 C 1.52995 * 109.47106 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.47345 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99648 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00079 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00320 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99740 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47387 * 89.99994 * 19 17 15 21 21 H 1.48501 * 109.47355 * 210.00053 * 19 17 15 22 22 H 1.48503 * 109.47517 * 329.99878 * 19 17 15 23 23 C 1.41549 * 106.95616 * 0.02562 * 8 7 6 24 24 C 1.35047 * 124.87561 * 119.72141 * 6 3 2 25 25 C 1.50697 * 126.38268 * 0.02562 * 24 6 3 26 26 H 1.09000 * 109.46772 * 299.99985 * 1 2 3 27 27 H 1.08998 * 109.46554 * 60.00185 * 1 2 3 28 28 H 1.08996 * 109.46870 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46772 * 240.00015 * 2 1 3 30 30 H 1.08994 * 109.46772 * 120.00268 * 2 1 3 31 31 H 1.09001 * 109.47002 * 59.99738 * 5 3 2 32 32 H 1.08993 * 109.46955 * 180.02562 * 5 3 2 33 33 H 1.09000 * 109.47050 * 300.00004 * 5 3 2 34 34 H 1.09002 * 109.47787 * 299.99699 * 12 11 9 35 35 H 1.09000 * 109.47349 * 60.00196 * 12 11 9 36 36 H 1.08999 * 109.47290 * 300.00203 * 13 12 11 37 37 H 1.09000 * 109.46871 * 60.00080 * 13 12 11 38 38 H 1.09002 * 109.47604 * 299.99957 * 14 13 12 39 39 H 1.09000 * 109.47214 * 60.00260 * 14 13 12 40 40 H 0.97003 * 120.00149 * 180.02562 * 18 17 15 41 41 H 1.07992 * 127.25082 * 180.02562 * 23 8 7 42 42 H 1.08999 * 109.46995 * 90.00292 * 25 24 6 43 43 H 1.09003 * 109.47253 * 209.99651 * 25 24 6 44 44 H 1.08994 * 109.47219 * 330.00372 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3074 6 7 3.5001 1.4442 -0.1203 7 7 4.3066 0.8915 0.7130 8 6 5.5532 1.0697 0.3221 9 6 6.7667 0.5870 1.0094 10 8 7.8634 0.8206 0.5414 11 8 6.6585 -0.1126 2.1557 12 6 7.8940 -0.5560 2.7763 13 6 7.5726 -1.3274 4.0580 14 6 8.8744 -1.7941 4.7124 15 6 8.5579 -2.5534 5.9751 16 1 7.5308 -2.6898 6.2801 17 6 9.5794 -3.0749 6.7404 18 7 10.8299 -2.9092 6.3688 19 14 9.1869 -4.0166 8.3051 20 1 9.0231 -5.4579 7.9876 21 1 10.2971 -3.8469 9.2767 22 1 7.9285 -3.4937 8.8953 23 6 5.5060 1.8130 -0.8816 24 6 4.1913 2.0222 -1.1263 25 6 3.6078 2.7652 -2.3003 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.0699 1.5875 2.1492 32 1 1.9982 3.1543 1.3072 33 1 0.5490 2.1253 1.3969 34 1 8.4345 -1.2049 2.0872 35 1 8.5101 0.3099 3.0188 36 1 7.0324 -0.6782 4.7470 37 1 6.9563 -2.1933 3.8160 38 1 9.4150 -2.4433 4.0236 39 1 9.4902 -0.9280 4.9545 40 1 11.5485 -3.2764 6.9070 41 1 6.3426 2.1398 -1.4813 42 1 3.5105 3.8216 -2.0497 43 1 4.2652 2.6556 -3.1629 44 1 2.6258 2.3562 -2.5376 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778162697.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:53 Heat of formation + Delta-G solvation = -37.028874 kcal Electronic energy + Delta-G solvation = -22980.122747 eV Core-core repulsion = 19512.623704 eV Total energy + Delta-G solvation = -3467.499043 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.96579 -39.80372 -36.94356 -36.22294 -33.91882 -33.09606 -32.06954 -31.57504 -29.50940 -27.50471 -27.06977 -25.69509 -24.19105 -22.85279 -21.37571 -21.04080 -20.27467 -19.41619 -17.40735 -16.95207 -16.52291 -16.38038 -15.86464 -15.79483 -15.49929 -14.43155 -14.41397 -14.19388 -13.87282 -13.55877 -13.40966 -13.25358 -13.02492 -12.78260 -12.61953 -12.27719 -12.12938 -12.09006 -11.99933 -11.80379 -11.46901 -11.29078 -10.92638 -10.85263 -10.67237 -10.56041 -10.41093 -10.28340 -9.63816 -9.45634 -9.30807 -9.11544 -9.10858 -8.34015 -5.98854 -4.01483 1.40001 1.85589 2.09820 3.00288 3.28597 3.34343 3.40199 3.44187 3.91993 4.24816 4.28038 4.42932 4.47577 4.52137 4.71089 4.81035 4.86522 5.02407 5.07943 5.15876 5.28872 5.35052 5.37056 5.38820 5.44729 5.49886 5.56048 5.67619 5.68017 5.73323 5.77840 5.80182 6.09401 6.20925 6.54399 6.60572 6.63422 6.91441 7.06659 7.66431 7.70447 7.78257 8.00019 8.10894 8.41816 9.04838 9.62416 11.12700 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019448 B = 0.002688 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.354964 B =10413.465624 C =11588.212204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.145 3.855 4 H 0.108 0.892 5 C -0.166 4.166 6 N -0.273 5.273 7 N -0.225 5.225 8 C -0.001 4.001 9 C 0.550 3.450 10 O -0.505 6.505 11 O -0.343 6.343 12 C 0.068 3.932 13 C -0.108 4.108 14 C 0.024 3.976 15 C -0.520 4.520 16 H 0.057 0.943 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.175 4.175 24 C 0.004 3.996 25 C -0.083 4.083 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.261 0.739 41 H 0.164 0.836 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.265 12.252 -18.739 31.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C 0.045 3.955 4 H 0.126 0.874 5 C -0.223 4.223 6 N -0.063 5.063 7 N -0.062 5.062 8 C -0.158 4.158 9 C 0.392 3.608 10 O -0.392 6.392 11 O -0.258 6.258 12 C -0.005 4.005 13 C -0.146 4.146 14 C -0.013 4.013 15 C -0.558 4.558 16 H 0.076 0.924 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.202 4.202 24 C -0.119 4.119 25 C -0.141 4.141 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.181 0.819 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.472 11.774 -17.920 31.061 hybrid contribution 0.608 -0.201 0.241 0.684 sum -21.865 11.573 -17.679 30.407 Atomic orbital electron populations 1.21795 0.94005 1.02814 1.02215 1.21905 0.96860 0.94251 1.04348 1.21740 0.73377 0.99185 1.01187 0.87382 1.22212 1.02644 1.01063 0.96418 1.45821 1.07354 1.37440 1.15715 1.73698 1.00227 1.15663 1.16591 1.20838 0.90037 1.07011 0.97945 1.19570 0.86622 0.75364 0.79243 1.90844 1.27230 1.55198 1.65891 1.86636 1.38971 1.64483 1.35696 1.23549 0.82660 0.98931 0.95384 1.21754 1.01967 0.98461 0.92385 1.19055 0.90547 0.96496 0.95221 1.21188 0.92964 1.34297 1.07371 0.92434 1.25027 0.95034 0.96375 0.98070 1.69967 0.98706 1.45749 1.39008 0.86549 0.77958 0.80208 0.83026 1.20640 1.21215 1.19822 1.21479 0.95986 1.04616 0.98146 1.21403 0.91807 1.03783 0.94903 1.20348 1.01066 0.99180 0.93516 0.91836 0.92470 0.91689 0.91176 0.89731 0.90334 0.91824 0.89937 0.91390 0.91395 0.92133 0.92138 0.96204 0.96193 0.92931 0.81881 0.90319 0.89455 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.67 37.16 0.36 -0.31 16 2 C -0.14 -0.93 5.57 -26.73 -0.15 -1.08 16 3 C 0.15 1.01 3.02 -67.93 -0.20 0.80 16 4 H 0.11 0.45 6.55 -51.93 -0.34 0.11 16 5 C -0.17 -1.09 9.12 37.16 0.34 -0.76 16 6 N -0.27 -2.91 3.04 -50.66 -0.15 -3.06 16 7 N -0.23 -3.26 11.65 33.41 0.39 -2.87 16 8 C 0.00 -0.01 7.17 -82.79 -0.59 -0.60 16 9 C 0.55 10.12 7.97 34.54 0.28 10.39 16 10 O -0.51 -10.08 16.72 -19.26 -0.32 -10.40 16 11 O -0.34 -6.68 10.23 -40.57 -0.42 -7.09 16 12 C 0.07 1.36 5.48 37.16 0.20 1.56 16 13 C -0.11 -2.39 5.53 -26.73 -0.15 -2.54 16 14 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 15 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 16 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 19 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 C -0.17 -2.17 10.73 -39.35 -0.42 -2.59 16 24 C 0.00 0.04 6.92 -82.21 -0.57 -0.53 16 25 C -0.08 -0.42 9.92 36.00 0.36 -0.06 16 26 H 0.06 0.25 6.56 -51.93 -0.34 -0.09 16 27 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.35 6.56 -51.93 -0.34 0.01 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.16 1.79 8.06 -52.49 -0.42 1.36 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.24 7.03 -51.93 -0.36 -0.13 16 LS Contribution 371.20 15.07 5.59 5.59 Total: -1.00 -34.35 371.20 -7.56 -41.92 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -7.27 Total: -5.39 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -1.10 Total: -9.04 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.97 Total: -32.56 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.74 Total: -17.49 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.35 -7.56 -41.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778162697.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.889 kcal (2) G-P(sol) polarization free energy of solvation -34.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds