Wall clock time and date at job start Tue Mar 31 2020 06:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.47134 * 2 1 4 4 H 1.09001 * 109.46922 * 305.00135 * 3 2 1 5 5 C 1.53006 * 109.47164 * 64.99887 * 3 2 1 6 6 N 1.46496 * 109.47194 * 184.99801 * 3 2 1 7 7 N 1.28469 * 124.88088 * 300.02661 * 6 3 2 8 8 C 1.31851 * 110.06260 * 179.97438 * 7 6 3 9 9 C 1.47584 * 126.52194 * 179.97438 * 8 7 6 10 10 O 1.21497 * 120.00033 * 180.02562 * 9 8 7 11 11 O 1.34730 * 120.00103 * 0.02719 * 9 8 7 12 12 C 1.45197 * 116.99673 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.46789 * 179.97438 * 12 11 9 14 14 C 1.52995 * 109.47106 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.47345 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99648 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00079 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00320 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99740 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47387 * 89.99994 * 19 17 15 21 21 H 1.48501 * 109.47355 * 210.00053 * 19 17 15 22 22 H 1.48503 * 109.47517 * 329.99878 * 19 17 15 23 23 C 1.41549 * 106.95616 * 0.02562 * 8 7 6 24 24 C 1.35047 * 124.87561 * 119.72141 * 6 3 2 25 25 C 1.50697 * 126.38268 * 0.02562 * 24 6 3 26 26 H 1.09000 * 109.46772 * 299.99985 * 1 2 3 27 27 H 1.08998 * 109.46554 * 60.00185 * 1 2 3 28 28 H 1.08996 * 109.46870 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46772 * 240.00015 * 2 1 3 30 30 H 1.08994 * 109.46772 * 120.00268 * 2 1 3 31 31 H 1.09001 * 109.47002 * 59.99738 * 5 3 2 32 32 H 1.08993 * 109.46955 * 180.02562 * 5 3 2 33 33 H 1.09000 * 109.47050 * 300.00004 * 5 3 2 34 34 H 1.09002 * 109.47787 * 299.99699 * 12 11 9 35 35 H 1.09000 * 109.47349 * 60.00196 * 12 11 9 36 36 H 1.08999 * 109.47290 * 300.00203 * 13 12 11 37 37 H 1.09000 * 109.46871 * 60.00080 * 13 12 11 38 38 H 1.09002 * 109.47604 * 299.99957 * 14 13 12 39 39 H 1.09000 * 109.47214 * 60.00260 * 14 13 12 40 40 H 0.97003 * 120.00149 * 180.02562 * 18 17 15 41 41 H 1.07992 * 127.25082 * 180.02562 * 23 8 7 42 42 H 1.08999 * 109.46995 * 90.00292 * 25 24 6 43 43 H 1.09003 * 109.47253 * 209.99651 * 25 24 6 44 44 H 1.08994 * 109.47219 * 330.00372 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3074 6 7 3.5001 1.4442 -0.1203 7 7 4.3066 0.8915 0.7130 8 6 5.5532 1.0697 0.3221 9 6 6.7667 0.5870 1.0094 10 8 7.8634 0.8206 0.5414 11 8 6.6585 -0.1126 2.1557 12 6 7.8940 -0.5560 2.7763 13 6 7.5726 -1.3274 4.0580 14 6 8.8744 -1.7941 4.7124 15 6 8.5579 -2.5534 5.9751 16 1 7.5308 -2.6898 6.2801 17 6 9.5794 -3.0749 6.7404 18 7 10.8299 -2.9092 6.3688 19 14 9.1869 -4.0166 8.3051 20 1 9.0231 -5.4579 7.9876 21 1 10.2971 -3.8469 9.2767 22 1 7.9285 -3.4937 8.8953 23 6 5.5060 1.8130 -0.8816 24 6 4.1913 2.0222 -1.1263 25 6 3.6078 2.7652 -2.3003 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.0699 1.5875 2.1492 32 1 1.9982 3.1543 1.3072 33 1 0.5490 2.1253 1.3969 34 1 8.4345 -1.2049 2.0872 35 1 8.5101 0.3099 3.0188 36 1 7.0324 -0.6782 4.7470 37 1 6.9563 -2.1933 3.8160 38 1 9.4150 -2.4433 4.0236 39 1 9.4902 -0.9280 4.9545 40 1 11.5485 -3.2764 6.9070 41 1 6.3426 2.1398 -1.4813 42 1 3.5105 3.8216 -2.0497 43 1 4.2652 2.6556 -3.1629 44 1 2.6258 2.3562 -2.5376 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778162697.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:52 Heat of formation + Delta-G solvation = -56.714673 kcal Electronic energy + Delta-G solvation = -22980.976387 eV Core-core repulsion = 19512.623704 eV Total energy + Delta-G solvation = -3468.352683 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.87798 -41.30334 -37.93162 -37.43445 -35.96103 -33.93064 -33.61316 -32.77720 -30.16502 -29.13387 -27.97622 -26.75192 -25.34390 -24.41594 -22.24283 -22.17264 -22.01240 -20.49325 -18.70524 -18.21103 -18.11606 -17.83688 -17.16857 -16.93506 -16.50100 -16.09660 -15.63223 -15.12242 -14.87360 -14.61866 -14.23727 -14.05216 -13.93420 -13.83124 -13.80011 -13.56831 -13.35129 -13.09266 -12.84393 -12.74588 -12.57687 -12.53327 -12.44849 -12.12088 -12.05285 -12.03361 -11.85200 -11.65940 -11.51162 -11.46190 -11.26437 -10.58522 -10.25430 -9.97330 -8.22796 -6.34599 0.18391 1.00295 1.21804 1.40274 1.42235 1.53550 1.73488 2.00718 2.40656 3.10760 3.15490 3.60291 3.64251 3.73357 3.95472 3.95777 3.97526 4.01377 4.30296 4.36197 4.38821 4.40607 4.49774 4.58728 4.71061 4.75741 4.78916 4.83215 4.86813 4.97585 5.03517 5.04564 5.08660 5.10537 5.22045 5.27705 5.32021 5.41112 5.46683 5.61277 5.78208 5.84867 6.17660 6.49507 6.80434 6.88766 7.34682 8.89626 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019448 B = 0.002688 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.354964 B =10413.465624 C =11588.212204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C 0.136 3.864 4 H 0.150 0.850 5 C -0.163 4.163 6 N -0.264 5.264 7 N -0.252 5.252 8 C -0.037 4.037 9 C 0.548 3.452 10 O -0.529 6.529 11 O -0.349 6.349 12 C 0.076 3.924 13 C -0.092 4.092 14 C 0.028 3.972 15 C -0.545 4.545 16 H 0.063 0.937 17 C -0.001 4.001 18 N -0.933 5.933 19 Si 0.970 3.030 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.262 1.262 23 C -0.193 4.193 24 C 0.025 3.975 25 C -0.083 4.083 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.111 0.889 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.064 0.936 38 H -0.001 1.001 39 H -0.001 1.001 40 H 0.265 0.735 41 H 0.171 0.829 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.399 13.129 -19.790 34.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C 0.038 3.962 4 H 0.167 0.833 5 C -0.221 4.221 6 N -0.055 5.055 7 N -0.090 5.090 8 C -0.192 4.192 9 C 0.392 3.608 10 O -0.417 6.417 11 O -0.264 6.264 12 C 0.003 3.997 13 C -0.130 4.130 14 C -0.009 4.009 15 C -0.583 4.583 16 H 0.082 0.918 17 C -0.199 4.199 18 N -0.573 5.573 19 Si 0.794 3.206 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.186 1.186 23 C -0.220 4.220 24 C -0.099 4.099 25 C -0.141 4.141 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.130 0.870 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.017 0.983 39 H 0.017 0.983 40 H 0.074 0.926 41 H 0.189 0.811 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -25.629 12.654 -18.978 34.309 hybrid contribution 1.485 -0.420 0.481 1.617 sum -24.143 12.234 -18.497 32.782 Atomic orbital electron populations 1.21780 0.91756 1.03151 1.03613 1.21864 0.98708 0.93905 1.02617 1.22235 0.71279 0.99725 1.02975 0.83281 1.22212 1.04342 1.00400 0.95106 1.46298 1.08443 1.35795 1.14961 1.73621 1.00265 1.16926 1.18196 1.20704 0.89545 1.09426 0.99524 1.20087 0.87623 0.74543 0.78517 1.90810 1.28389 1.56223 1.66319 1.86620 1.38187 1.65038 1.36606 1.23248 0.83068 0.98692 0.94681 1.21456 0.99589 0.98855 0.93101 1.18924 0.92110 0.95132 0.94775 1.21609 0.93473 1.34843 1.08340 0.91831 1.26020 0.94725 0.97266 1.01876 1.70099 0.99854 1.46729 1.40639 0.85366 0.78166 0.78781 0.78250 1.19633 1.20595 1.18636 1.21727 0.97837 1.05055 0.97431 1.22103 0.90811 1.01877 0.95140 1.20598 1.02315 0.99575 0.91562 0.91158 0.90269 0.91993 0.91754 0.92711 0.93279 0.91799 0.87029 0.91489 0.91492 0.91718 0.91709 0.98308 0.98298 0.92598 0.81110 0.88421 0.88212 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.67 71.99 0.70 -0.21 16 2 C -0.13 -1.62 5.57 30.60 0.17 -1.45 16 3 C 0.14 1.53 3.02 44.99 0.14 1.67 16 4 H 0.15 0.49 6.55 -2.39 -0.02 0.48 16 5 C -0.16 -1.84 9.12 71.98 0.66 -1.18 16 6 N -0.26 -5.24 3.04 -314.20 -0.96 -6.20 16 7 N -0.25 -7.39 11.65 -48.22 -0.56 -7.95 16 8 C -0.04 -1.18 7.17 42.43 0.30 -0.88 16 9 C 0.55 21.10 7.97 70.29 0.56 21.66 16 10 O -0.53 -22.07 16.72 19.85 0.33 -21.74 16 11 O -0.35 -14.17 10.23 -56.40 -0.58 -14.75 16 12 C 0.08 3.20 5.48 71.98 0.39 3.60 16 13 C -0.09 -4.20 5.53 30.59 0.17 -4.03 16 14 C 0.03 1.53 4.97 29.85 0.15 1.68 16 15 C -0.54 -32.02 9.11 25.60 0.23 -31.79 16 16 H 0.06 3.57 7.74 -2.91 -0.02 3.55 16 17 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 18 N -0.93 -58.10 13.29 21.45 0.28 -57.82 16 19 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 23 C -0.19 -4.71 10.73 22.42 0.24 -4.47 16 24 C 0.02 0.42 6.92 41.40 0.29 0.71 16 25 C -0.08 -0.48 9.92 71.23 0.71 0.23 16 26 H 0.07 0.35 6.56 -2.39 -0.02 0.34 16 27 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.11 0.59 6.56 -2.39 -0.02 0.57 16 34 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 35 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.06 2.87 8.14 -2.39 -0.02 2.85 16 37 H 0.06 2.87 8.14 -2.39 -0.02 2.85 16 38 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 40 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.17 3.70 8.06 -2.91 -0.02 3.68 16 42 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 43 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.09 0.12 7.03 -2.39 -0.02 0.10 16 Total: -1.00 -77.34 371.20 6.68 -70.65 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: 0.97 Total: 4.67 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: 5.16 Total: -14.06 kcal Atomic # 7 Polarization: -70.74 SS G_CDS: -1.23 Total: -71.97 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -0.25 Total: -36.49 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -77.34 6.68 -70.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778162697.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.940 kcal (2) G-P(sol) polarization free energy of solvation -77.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds