Wall clock time and date at job start Tue Mar 31 2020 06:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.46662 * 2 1 4 4 N 1.46905 * 109.46844 * 119.99781 * 2 1 3 5 5 C 1.46904 * 110.99955 * 293.17652 * 4 2 1 6 6 C 1.50702 * 109.46881 * 160.13204 * 5 4 2 7 7 H 1.08003 * 119.99726 * 4.69558 * 6 5 4 8 8 C 1.37875 * 119.99587 * 184.69154 * 6 5 4 9 9 N 1.31509 * 120.00236 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99515 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47293 * 60.00307 * 10 8 6 12 12 H 1.48505 * 109.47004 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47221 * 300.00133 * 10 8 6 14 14 C 1.46902 * 110.99886 * 169.22430 * 4 2 1 15 15 N 1.46501 * 109.47114 * 278.95693 * 14 4 2 16 16 C 1.34049 * 122.78707 * 269.70939 * 15 14 4 17 17 O 1.21223 * 125.42240 * 359.95316 * 16 15 14 18 18 C 1.51606 * 109.15726 * 179.83879 * 16 15 14 19 19 C 1.53260 * 103.10002 * 0.37725 * 18 16 15 20 20 C 1.52709 * 115.82473 * 129.16865 * 19 18 16 21 21 C 1.53975 * 86.75579 * 93.12718 * 20 19 18 22 22 C 1.52719 * 115.81794 * 230.42769 * 19 18 16 23 23 C 1.34248 * 122.79497 * 89.99416 * 15 14 4 24 24 O 1.21230 * 125.64420 * 359.97438 * 23 15 14 25 25 H 1.08998 * 109.47237 * 300.06369 * 1 2 3 26 26 H 1.08999 * 109.46972 * 60.06699 * 1 2 3 27 27 H 1.09006 * 109.46760 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47448 * 239.99554 * 2 1 3 29 29 H 1.09003 * 109.47186 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47521 * 299.99205 * 3 2 1 31 31 H 1.09000 * 109.47661 * 60.00395 * 3 2 1 32 32 H 1.08994 * 109.47013 * 280.13243 * 5 4 2 33 33 H 1.08999 * 109.47188 * 40.13130 * 5 4 2 34 34 H 0.97006 * 119.99897 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.46991 * 38.94967 * 14 4 2 36 36 H 1.08992 * 109.47405 * 158.95274 * 14 4 2 37 37 H 1.09000 * 110.87542 * 241.88760 * 18 16 15 38 38 H 1.09001 * 110.64898 * 118.76482 * 18 16 15 39 39 H 1.08997 * 113.66742 * 207.59581 * 20 19 18 40 40 H 1.09007 * 113.67043 * 338.66423 * 20 19 18 41 41 H 1.08997 * 113.58714 * 270.02974 * 21 20 19 42 42 H 1.09008 * 113.65410 * 139.23609 * 21 20 19 43 43 H 1.08994 * 113.67204 * 21.33045 * 22 19 18 44 44 H 1.08998 * 113.66601 * 152.31332 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.6862 0.0613 2.4155 6 6 1.7471 -0.8574 3.6086 7 1 2.0807 -1.8776 3.4880 8 6 1.3771 -0.3956 4.8538 9 7 0.9715 0.8468 5.0006 10 14 1.4534 -1.5342 6.3328 11 1 2.8490 -2.0039 6.5245 12 1 1.0073 -0.8015 7.5450 13 1 0.5650 -2.7020 6.1047 14 6 3.4653 -0.9382 1.1123 15 7 3.7099 -2.1284 0.2938 16 6 3.7826 -3.3628 0.8113 17 8 3.6600 -3.6411 1.9848 18 6 4.0399 -4.3559 -0.3050 19 6 4.1108 -3.4668 -1.5513 20 6 5.3337 -3.6682 -2.4435 21 6 4.4749 -4.6618 -3.2472 22 6 3.2405 -3.9013 -2.7286 23 6 3.8852 -2.0729 -1.0360 24 8 3.8644 -1.0654 -1.7099 25 1 -0.3633 0.5148 0.8894 26 1 -0.3633 0.5128 -0.8906 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1299 1.4426 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9563 0.8900 32 1 2.4002 0.8744 2.5462 33 1 0.6807 0.4720 2.3242 34 1 0.7109 1.1716 5.8767 35 1 3.9533 -0.0770 0.6559 36 1 3.8681 -1.0962 2.1127 37 1 3.2199 -5.0692 -0.3869 38 1 4.9856 -4.8746 -0.1476 39 1 5.6159 -2.7786 -3.0065 40 1 6.1769 -4.1327 -1.9320 41 1 4.5395 -5.6874 -2.8840 42 1 4.6124 -4.5859 -4.3259 43 1 2.4132 -4.5517 -2.4447 44 1 2.9306 -3.0772 -3.3713 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839975945.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:56 Heat of formation + Delta-G solvation = -33.569976 kcal Electronic energy + Delta-G solvation = -25391.576049 eV Core-core repulsion = 21924.226996 eV Total energy + Delta-G solvation = -3467.349054 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.05928 -38.80817 -38.14513 -37.17511 -35.20863 -32.74692 -31.53982 -29.88269 -27.11851 -26.46435 -26.13836 -25.79904 -24.39139 -22.66467 -22.24847 -20.07427 -19.02959 -18.55796 -16.88419 -16.78360 -16.35201 -16.12029 -15.60644 -14.97187 -14.77168 -14.54577 -14.10849 -13.99534 -13.79565 -13.54090 -13.23136 -13.07909 -12.57727 -12.48947 -12.29041 -11.86380 -11.69798 -11.67032 -11.55084 -11.18797 -11.02570 -10.96911 -10.82861 -10.72422 -10.61993 -10.48481 -10.26507 -10.11709 -9.76539 -9.59001 -9.38688 -9.10751 -8.37184 -7.37241 -5.97642 -3.98060 1.75103 2.79083 3.00143 3.40766 3.42679 3.49272 3.97672 4.06316 4.29906 4.43290 4.47339 4.49206 4.62365 4.89606 5.01650 5.36335 5.37970 5.38642 5.46907 5.48089 5.51208 5.58004 5.62060 5.65857 5.70023 5.79051 5.86138 5.99890 6.06970 6.08947 6.16242 6.32941 6.38794 6.47093 6.78027 6.82705 7.08710 7.26225 7.31751 7.60794 7.88995 8.02073 8.09857 8.21053 8.53849 9.12647 9.66608 11.12635 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018282 B = 0.005338 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.219955 B = 5244.018315 C = 6285.845210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 C -0.178 4.178 4 N -0.539 5.539 5 C 0.197 3.803 6 C -0.507 4.507 7 H 0.068 0.932 8 C 0.057 3.943 9 N -0.901 5.901 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.290 1.290 13 H -0.277 1.277 14 C 0.267 3.733 15 N -0.561 5.561 16 C 0.527 3.473 17 O -0.462 6.462 18 C -0.135 4.135 19 C -0.134 4.134 20 C -0.110 4.110 21 C -0.136 4.136 22 C -0.109 4.109 23 C 0.541 3.459 24 O -0.484 6.484 25 H 0.064 0.936 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.064 0.936 32 H -0.007 1.007 33 H 0.044 0.956 34 H 0.261 0.739 35 H 0.062 0.938 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.984 -9.162 -16.770 20.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.038 4.038 3 C -0.237 4.237 4 N -0.264 5.264 5 C 0.073 3.927 6 C -0.546 4.546 7 H 0.086 0.914 8 C -0.144 4.144 9 N -0.541 5.541 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.215 1.215 13 H -0.202 1.202 14 C 0.057 3.943 15 N -0.304 5.304 16 C 0.314 3.686 17 O -0.331 6.331 18 C -0.175 4.175 19 C -0.137 4.137 20 C -0.147 4.147 21 C -0.173 4.173 22 C -0.147 4.147 23 C 0.330 3.670 24 O -0.357 6.357 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.011 0.989 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.585 -9.051 -16.251 19.732 hybrid contribution 0.284 0.381 0.948 1.061 sum 6.869 -8.670 -15.303 18.882 Atomic orbital electron populations 1.21798 0.94822 1.01772 1.01172 1.21760 0.95718 0.92475 0.93818 1.22397 1.00805 0.98592 1.01900 1.62046 1.11164 1.49393 1.03847 1.19755 0.96630 0.91975 0.84339 1.21257 1.43457 0.98501 0.91384 0.91351 1.24942 0.95382 0.95116 0.98951 1.69948 1.45279 1.15101 1.23775 0.86562 0.78593 0.80704 0.81581 1.20240 1.21540 1.20228 1.22204 0.91722 0.84485 0.95905 1.47107 1.62550 1.10885 1.09882 1.20696 0.74874 0.83426 0.89567 1.90826 1.44308 1.80950 1.17014 1.22280 1.06239 0.97863 0.91086 1.22120 1.02188 0.93252 0.96130 1.22725 0.94712 1.00530 0.96773 1.22900 0.95490 0.98517 1.00402 1.22719 0.96748 1.00532 0.94656 1.20315 0.74012 0.91032 0.81674 1.90702 1.47336 1.36324 1.61307 0.91714 0.93513 0.92643 0.91063 0.93280 0.93158 0.91709 0.98884 0.93797 0.92975 0.92045 0.87035 0.86360 0.86583 0.88761 0.90273 0.89566 0.90715 0.90152 0.88740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.18 37.16 0.34 -2.17 16 2 C 0.07 1.36 2.88 -67.71 -0.19 1.17 16 3 C -0.18 -3.25 8.54 37.15 0.32 -2.93 16 4 N -0.54 -11.80 4.46 -231.97 -1.04 -12.84 16 5 C 0.20 5.09 3.27 -4.97 -0.02 5.07 16 6 C -0.51 -14.51 8.53 -34.44 -0.29 -14.80 16 7 H 0.07 2.03 7.81 -52.48 -0.41 1.62 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 10 Si 0.90 22.55 29.54 -169.99 -5.02 17.53 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 14 C 0.27 5.37 5.09 -63.31 -0.32 5.05 16 15 N -0.56 -9.56 2.78 -118.75 -0.33 -9.89 16 16 C 0.53 8.64 8.10 -10.86 -0.09 8.55 16 17 O -0.46 -9.58 17.48 5.61 0.10 -9.48 16 18 C -0.13 -1.40 6.38 -27.30 -0.17 -1.57 16 19 C -0.13 -1.39 1.16 -156.02 -0.18 -1.57 16 20 C -0.11 -0.87 7.38 -26.37 -0.19 -1.06 16 21 C -0.14 -0.87 7.95 -25.72 -0.20 -1.07 16 22 C -0.11 -0.93 7.38 -26.36 -0.19 -1.12 16 23 C 0.54 8.06 6.59 -11.41 -0.08 7.99 16 24 O -0.48 -8.22 15.83 5.60 0.09 -8.13 16 25 H 0.06 1.29 6.28 -51.93 -0.33 0.96 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.07 1.35 5.36 -51.93 -0.28 1.07 16 29 H 0.05 0.89 6.47 -51.93 -0.34 0.55 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 1.28 6.74 -51.93 -0.35 0.93 16 32 H -0.01 -0.18 7.33 -51.93 -0.38 -0.56 16 33 H 0.04 1.20 5.88 -51.93 -0.31 0.90 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.06 1.19 5.86 -51.93 -0.30 0.89 16 36 H 0.11 2.49 6.94 -51.93 -0.36 2.13 16 37 H 0.12 1.04 7.80 -51.93 -0.40 0.64 16 38 H 0.12 0.92 7.80 -51.93 -0.40 0.51 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.52 7.90 -51.93 -0.41 0.11 16 41 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 43 H 0.08 0.62 7.90 -51.93 -0.41 0.21 16 44 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 347.95 15.07 5.24 5.24 Total: -1.00 -32.86 347.95 -8.37 -41.23 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -6.78 Total: -0.61 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -1.38 Total: 3.07 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: -0.63 Total: -48.86 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.19 Total: -17.61 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.86 -8.37 -41.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839975945.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.659 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds