Wall clock time and date at job start Tue Mar 31 2020 06:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.46662 * 2 1 4 4 N 1.46905 * 109.46844 * 119.99781 * 2 1 3 5 5 C 1.46904 * 110.99955 * 293.17652 * 4 2 1 6 6 C 1.50702 * 109.46881 * 160.13204 * 5 4 2 7 7 H 1.08003 * 119.99726 * 4.69558 * 6 5 4 8 8 C 1.37875 * 119.99587 * 184.69154 * 6 5 4 9 9 N 1.31509 * 120.00236 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99515 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47293 * 60.00307 * 10 8 6 12 12 H 1.48505 * 109.47004 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47221 * 300.00133 * 10 8 6 14 14 C 1.46902 * 110.99886 * 169.22430 * 4 2 1 15 15 N 1.46501 * 109.47114 * 278.95693 * 14 4 2 16 16 C 1.34049 * 122.78707 * 269.70939 * 15 14 4 17 17 O 1.21223 * 125.42240 * 359.95316 * 16 15 14 18 18 C 1.51606 * 109.15726 * 179.83879 * 16 15 14 19 19 C 1.53260 * 103.10002 * 0.37725 * 18 16 15 20 20 C 1.52709 * 115.82473 * 129.16865 * 19 18 16 21 21 C 1.53975 * 86.75579 * 93.12718 * 20 19 18 22 22 C 1.52719 * 115.81794 * 230.42769 * 19 18 16 23 23 C 1.34248 * 122.79497 * 89.99416 * 15 14 4 24 24 O 1.21230 * 125.64420 * 359.97438 * 23 15 14 25 25 H 1.08998 * 109.47237 * 300.06369 * 1 2 3 26 26 H 1.08999 * 109.46972 * 60.06699 * 1 2 3 27 27 H 1.09006 * 109.46760 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47448 * 239.99554 * 2 1 3 29 29 H 1.09003 * 109.47186 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47521 * 299.99205 * 3 2 1 31 31 H 1.09000 * 109.47661 * 60.00395 * 3 2 1 32 32 H 1.08994 * 109.47013 * 280.13243 * 5 4 2 33 33 H 1.08999 * 109.47188 * 40.13130 * 5 4 2 34 34 H 0.97006 * 119.99897 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.46991 * 38.94967 * 14 4 2 36 36 H 1.08992 * 109.47405 * 158.95274 * 14 4 2 37 37 H 1.09000 * 110.87542 * 241.88760 * 18 16 15 38 38 H 1.09001 * 110.64898 * 118.76482 * 18 16 15 39 39 H 1.08997 * 113.66742 * 207.59581 * 20 19 18 40 40 H 1.09007 * 113.67043 * 338.66423 * 20 19 18 41 41 H 1.08997 * 113.58714 * 270.02974 * 21 20 19 42 42 H 1.09008 * 113.65410 * 139.23609 * 21 20 19 43 43 H 1.08994 * 113.67204 * 21.33045 * 22 19 18 44 44 H 1.08998 * 113.66601 * 152.31332 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.6862 0.0613 2.4155 6 6 1.7471 -0.8574 3.6086 7 1 2.0807 -1.8776 3.4880 8 6 1.3771 -0.3956 4.8538 9 7 0.9715 0.8468 5.0006 10 14 1.4534 -1.5342 6.3328 11 1 2.8490 -2.0039 6.5245 12 1 1.0073 -0.8015 7.5450 13 1 0.5650 -2.7020 6.1047 14 6 3.4653 -0.9382 1.1123 15 7 3.7099 -2.1284 0.2938 16 6 3.7826 -3.3628 0.8113 17 8 3.6600 -3.6411 1.9848 18 6 4.0399 -4.3559 -0.3050 19 6 4.1108 -3.4668 -1.5513 20 6 5.3337 -3.6682 -2.4435 21 6 4.4749 -4.6618 -3.2472 22 6 3.2405 -3.9013 -2.7286 23 6 3.8852 -2.0729 -1.0360 24 8 3.8644 -1.0654 -1.7099 25 1 -0.3633 0.5148 0.8894 26 1 -0.3633 0.5128 -0.8906 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1299 1.4426 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9563 0.8900 32 1 2.4002 0.8744 2.5462 33 1 0.6807 0.4720 2.3242 34 1 0.7109 1.1716 5.8767 35 1 3.9533 -0.0770 0.6559 36 1 3.8681 -1.0962 2.1127 37 1 3.2199 -5.0692 -0.3869 38 1 4.9856 -4.8746 -0.1476 39 1 5.6159 -2.7786 -3.0065 40 1 6.1769 -4.1327 -1.9320 41 1 4.5395 -5.6874 -2.8840 42 1 4.6124 -4.5859 -4.3259 43 1 2.4132 -4.5517 -2.4447 44 1 2.9306 -3.0772 -3.3713 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839975945.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:55 Heat of formation + Delta-G solvation = -55.504934 kcal Electronic energy + Delta-G solvation = -25392.527221 eV Core-core repulsion = 21924.226996 eV Total energy + Delta-G solvation = -3468.300225 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.19681 -39.96102 -39.56923 -38.50410 -36.57396 -34.91751 -32.97020 -31.30463 -28.91406 -28.09303 -26.88835 -26.75430 -25.96227 -24.36190 -23.54475 -21.29183 -20.14747 -19.94084 -18.77138 -18.13855 -17.76012 -17.39549 -16.71834 -16.62084 -16.23713 -15.81440 -15.75918 -15.18352 -15.12930 -15.03898 -14.36150 -14.27410 -14.15632 -14.02683 -13.68917 -13.31000 -13.15633 -12.97263 -12.88351 -12.65676 -12.42317 -12.40533 -12.27683 -12.21445 -12.19330 -11.70422 -11.53327 -11.39618 -11.32511 -11.25991 -10.83881 -10.74216 -10.59698 -9.19018 -8.21544 -6.29743 0.53273 1.36370 1.39070 1.47641 1.51588 1.78633 2.38622 3.05748 3.06781 3.13906 3.23949 3.52901 3.56617 3.78039 3.87257 3.91278 3.97716 4.15063 4.30010 4.33792 4.48344 4.53183 4.63207 4.67195 4.74922 4.79309 4.80850 4.85953 4.87297 4.92933 5.03964 5.06632 5.17253 5.20955 5.21297 5.28843 5.31318 5.52698 5.66176 5.90705 6.05122 6.18856 6.40790 6.52839 6.78856 6.89430 7.38977 8.88156 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018282 B = 0.005338 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.219955 B = 5244.018315 C = 6285.845210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.070 3.930 3 C -0.169 4.169 4 N -0.547 5.547 5 C 0.219 3.781 6 C -0.522 4.522 7 H 0.052 0.948 8 C 0.010 3.990 9 N -0.929 5.929 10 Si 0.960 3.040 11 H -0.275 1.275 12 H -0.277 1.277 13 H -0.273 1.273 14 C 0.274 3.726 15 N -0.570 5.570 16 C 0.517 3.483 17 O -0.517 6.517 18 C -0.114 4.114 19 C -0.131 4.131 20 C -0.107 4.107 21 C -0.118 4.118 22 C -0.111 4.111 23 C 0.535 3.465 24 O -0.509 6.509 25 H 0.040 0.960 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.079 0.921 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.042 0.958 32 H -0.030 1.030 33 H 0.025 0.975 34 H 0.265 0.735 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.144 0.856 38 H 0.152 0.848 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.533 -11.582 -18.795 23.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.038 4.038 3 C -0.228 4.228 4 N -0.272 5.272 5 C 0.094 3.906 6 C -0.560 4.560 7 H 0.071 0.929 8 C -0.188 4.188 9 N -0.569 5.569 10 Si 0.785 3.215 11 H -0.200 1.200 12 H -0.202 1.202 13 H -0.198 1.198 14 C 0.062 3.938 15 N -0.313 5.313 16 C 0.308 3.692 17 O -0.390 6.390 18 C -0.153 4.153 19 C -0.134 4.134 20 C -0.145 4.145 21 C -0.155 4.155 22 C -0.149 4.149 23 C 0.326 3.674 24 O -0.383 6.383 25 H 0.059 0.941 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.061 0.939 32 H -0.012 1.012 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.162 0.838 38 H 0.169 0.831 39 H 0.103 0.897 40 H 0.117 0.883 41 H 0.128 0.872 42 H 0.105 0.895 43 H 0.111 0.889 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.148 -11.486 -18.331 22.782 hybrid contribution 0.136 1.199 1.505 1.929 sum 7.284 -10.287 -16.826 21.024 Atomic orbital electron populations 1.21752 0.93870 1.01728 1.01573 1.21855 0.96466 0.92820 0.92639 1.22295 1.00435 0.97977 1.02098 1.61966 1.12461 1.49277 1.03544 1.19303 0.94803 0.91015 0.85525 1.21438 1.43585 0.98126 0.92900 0.92947 1.25719 0.94896 0.96576 1.01623 1.70045 1.45773 1.16501 1.24613 0.85588 0.78566 0.78862 0.78481 1.20046 1.20166 1.19840 1.21829 0.90520 0.86263 0.95160 1.47275 1.62900 1.10328 1.10786 1.21836 0.73124 0.84064 0.90196 1.90793 1.46874 1.81662 1.19690 1.22385 1.08915 0.96391 0.87599 1.22355 1.04911 0.89419 0.96761 1.22804 0.94503 1.00930 0.96243 1.22885 0.92720 0.98868 1.00994 1.22812 0.97988 1.00720 0.93392 1.21225 0.72749 0.92920 0.80491 1.90678 1.48288 1.37840 1.61461 0.94100 0.90206 0.92888 0.90260 0.93738 0.90431 0.93881 1.01247 0.95690 0.92643 0.91883 0.90235 0.83845 0.83065 0.89744 0.88270 0.87230 0.89550 0.88945 0.89906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 9.18 71.98 0.66 -4.11 16 2 C 0.07 2.73 2.88 44.91 0.13 2.86 16 3 C -0.17 -6.27 8.54 71.98 0.61 -5.65 16 4 N -0.55 -25.00 4.46 -887.81 -3.96 -28.96 16 5 C 0.22 11.93 3.27 85.56 0.28 12.21 16 6 C -0.52 -31.17 8.53 25.60 0.22 -30.95 16 7 H 0.05 3.25 7.81 -2.91 -0.02 3.23 16 8 C 0.01 0.61 5.46 84.66 0.46 1.07 16 9 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 10 Si 0.96 47.15 29.54 68.60 2.03 49.18 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 H -0.27 -13.19 7.11 99.48 0.71 -12.49 16 14 C 0.27 11.61 5.09 170.81 0.87 12.47 16 15 N -0.57 -19.69 2.78 -767.16 -2.14 -21.83 16 16 C 0.52 16.84 8.10 88.06 0.71 17.55 16 17 O -0.52 -22.09 17.48 -2.85 -0.05 -22.14 16 18 C -0.11 -2.00 6.38 30.22 0.19 -1.80 16 19 C -0.13 -2.35 1.16 -53.16 -0.06 -2.42 16 20 C -0.11 -1.30 7.38 30.83 0.23 -1.07 16 21 C -0.12 -0.93 7.95 31.25 0.25 -0.68 16 22 C -0.11 -1.51 7.38 30.83 0.23 -1.29 16 23 C 0.54 15.51 6.59 87.62 0.58 16.09 16 24 O -0.51 -17.05 15.83 -2.87 -0.05 -17.09 16 25 H 0.04 1.67 6.28 -2.39 -0.02 1.65 16 26 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 28 H 0.08 2.98 5.36 -2.39 -0.01 2.97 16 29 H 0.04 1.66 6.47 -2.39 -0.02 1.64 16 30 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.04 1.76 6.74 -2.39 -0.02 1.75 16 32 H -0.03 -1.75 7.33 -2.39 -0.02 -1.76 16 33 H 0.03 1.45 5.88 -2.39 -0.01 1.44 16 34 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 35 H 0.06 2.59 5.86 -2.39 -0.01 2.58 16 36 H 0.08 3.84 6.94 -2.39 -0.02 3.82 16 37 H 0.14 1.91 7.80 -2.39 -0.02 1.89 16 38 H 0.15 1.67 7.80 -2.39 -0.02 1.65 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.10 0.84 7.90 -2.38 -0.02 0.82 16 41 H 0.11 0.44 8.14 -2.39 -0.02 0.43 16 42 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 43 H 0.09 1.06 7.90 -2.39 -0.02 1.04 16 44 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -75.57 347.95 2.47 -73.10 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 1.00 Total: 9.98 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 5.36 Total: 14.28 kcal Atomic # 7 Polarization: -101.49 SS G_CDS: -5.82 Total: -107.31 kcal Atomic # 8 Polarization: -39.14 SS G_CDS: -0.10 Total: -39.23 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -75.57 2.47 -73.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839975945.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.599 kcal (2) G-P(sol) polarization free energy of solvation -75.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds