Wall clock time and date at job start Tue Mar 31 2020 08:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50691 * 120.00387 * 2 1 4 4 O 1.42901 * 109.47384 * 134.99780 * 3 2 1 5 5 C 1.42897 * 114.00095 * 179.97438 * 4 3 2 6 6 C 1.50708 * 109.46984 * 180.02562 * 5 4 3 7 7 O 1.21276 * 119.99869 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99671 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99661 * 179.97438 * 8 6 5 10 10 C 1.53957 * 113.58030 * 205.00293 * 9 8 6 11 11 C 1.52917 * 86.77928 * 220.66444 * 10 9 8 12 12 C 1.52910 * 121.13486 * 259.17796 * 11 10 9 13 13 C 1.53949 * 86.78077 * 209.38575 * 12 11 10 14 14 N 1.46498 * 113.58269 * 139.33921 * 13 12 11 15 15 C 1.36938 * 119.99858 * 107.27989 * 14 13 12 16 16 H 1.07998 * 120.00416 * 359.97438 * 15 14 13 17 17 C 1.38820 * 119.99593 * 180.02562 * 15 14 13 18 18 N 1.31613 * 119.99901 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99783 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47162 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47095 * 119.99593 * 19 17 15 22 22 H 1.48499 * 109.46925 * 239.99781 * 19 17 15 23 23 C 1.52905 * 121.13340 * 150.61497 * 11 10 9 24 24 C 1.52909 * 88.04253 * 24.89691 * 11 10 9 25 25 H 1.08008 * 119.99624 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.00658 * 180.02562 * 1 2 3 27 27 H 1.07998 * 119.99448 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47357 * 14.99838 * 3 2 1 29 29 H 1.09008 * 109.47370 * 255.00106 * 3 2 1 30 30 H 1.09001 * 109.46771 * 60.00656 * 5 4 3 31 31 H 1.09000 * 109.47557 * 300.00499 * 5 4 3 32 32 H 0.96996 * 120.00391 * 0.02562 * 8 6 5 33 33 H 1.09001 * 112.88003 * 336.14559 * 9 8 6 34 34 H 1.08997 * 113.66354 * 106.19621 * 10 9 8 35 35 H 1.09002 * 113.65722 * 335.13352 * 10 9 8 36 36 H 1.09006 * 113.66074 * 323.85230 * 12 11 10 37 37 H 1.08994 * 113.66448 * 94.91195 * 12 11 10 38 38 H 1.09009 * 113.57633 * 270.12923 * 13 12 11 39 39 H 0.97003 * 119.99770 * 287.27692 * 14 13 12 40 40 H 0.96998 * 120.00002 * 180.02562 * 18 17 15 41 41 H 1.08990 * 113.66878 * 265.09053 * 23 11 10 42 42 H 1.09000 * 113.66430 * 36.05678 * 23 11 10 43 43 H 1.09001 * 113.66026 * 89.57323 * 24 11 10 44 44 H 1.08998 * 113.66179 * 220.53611 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9085 2.4347 1.0320 6 6 4.9948 2.2562 2.0613 7 8 5.0903 1.2097 2.6668 8 7 5.8600 3.2594 2.3088 9 6 6.9156 3.0861 3.3097 10 6 7.4102 4.4107 3.9189 11 6 8.8196 3.8236 3.8340 12 6 9.5060 3.2339 5.0666 13 6 10.8378 3.6552 4.4192 14 7 11.8011 4.2142 5.3709 15 6 12.9006 3.4860 5.7396 16 1 13.0574 2.4994 5.3293 17 6 13.8131 4.0156 6.6418 18 7 13.6217 5.2177 7.1423 19 14 15.3126 3.0220 7.1455 20 1 15.2958 1.7117 6.4467 21 1 16.5449 3.7642 6.7770 22 1 15.2889 2.7998 8.6136 23 6 10.0413 4.7243 3.6491 24 6 8.3207 2.9256 2.7014 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5401 -0.9352 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3856 2.1160 0.2659 29 1 2.4756 1.4867 -0.9927 30 1 3.2690 3.2694 1.3192 31 1 4.3588 2.6394 0.0607 32 1 5.7833 4.0965 1.8247 33 1 6.6735 2.3274 4.0539 34 1 7.0667 4.5779 4.9398 35 1 7.2562 5.2742 3.2718 36 1 9.2806 3.7674 5.9901 37 1 9.3868 2.1545 5.1593 38 1 11.2722 2.8887 3.7774 39 1 11.6601 5.1003 5.7397 40 1 14.2595 5.5879 7.7724 41 1 10.3498 4.8354 2.6097 42 1 9.9657 5.6772 4.1730 43 1 8.4227 3.3718 1.7121 44 1 8.7058 1.9070 2.7487 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120827866.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:38 Heat of formation + Delta-G solvation = -5.670939 kcal Electronic energy + Delta-G solvation = -22557.890586 eV Core-core repulsion = 19091.751325 eV Total energy + Delta-G solvation = -3466.139260 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.60596 -39.46095 -38.01277 -35.84949 -34.25644 -33.67541 -32.25430 -29.68171 -28.60736 -25.99290 -25.77646 -25.18552 -24.14044 -22.46065 -20.88163 -20.38439 -20.03846 -17.86784 -17.53307 -17.09160 -16.95757 -16.77290 -16.09360 -15.52361 -15.25403 -14.76084 -14.65824 -14.27889 -13.96864 -13.59188 -13.37330 -12.89009 -12.74701 -12.59262 -12.55819 -12.37153 -11.92001 -11.62356 -11.43027 -11.27250 -11.17971 -10.85056 -10.75907 -10.42720 -10.28655 -10.02465 -9.93392 -9.79107 -9.76788 -9.68165 -9.37598 -9.10125 -8.84622 -6.93516 -5.76678 -3.04882 1.67628 2.40828 2.63524 3.44084 3.50149 3.52165 3.68590 4.38031 4.54552 4.57980 4.59967 4.63099 4.68239 4.70552 4.77170 4.80193 4.88497 4.91814 5.03500 5.39724 5.41140 5.45988 5.56657 5.70091 5.80885 5.92049 5.94636 5.98424 6.09956 6.12014 6.16482 6.20643 6.25791 6.37291 6.42874 6.48781 6.63589 6.67234 6.94851 7.15304 7.32303 7.72548 8.04541 8.42325 9.53468 10.12190 10.46547 11.45935 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.048853 B = 0.002040 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.010284 B =13720.584255 C =14032.622484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.150 4.150 3 C 0.086 3.914 4 O -0.359 6.359 5 C 0.043 3.957 6 C 0.512 3.488 7 O -0.518 6.518 8 N -0.718 5.718 9 C 0.125 3.875 10 C -0.130 4.130 11 C -0.101 4.101 12 C -0.142 4.142 13 C 0.168 3.832 14 N -0.713 5.713 15 C -0.242 4.242 16 H 0.072 0.928 17 C -0.014 4.014 18 N -0.933 5.933 19 Si 0.906 3.094 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.135 4.135 24 C -0.125 4.125 25 H 0.098 0.902 26 H 0.105 0.895 27 H 0.119 0.881 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.399 0.601 33 H 0.115 0.885 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.385 0.615 40 H 0.254 0.746 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.598 -2.070 -16.546 29.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.168 4.168 3 C 0.010 3.990 4 O -0.277 6.277 5 C -0.037 4.037 6 C 0.296 3.704 7 O -0.392 6.392 8 N -0.371 5.371 9 C 0.021 3.979 10 C -0.168 4.168 11 C -0.103 4.103 12 C -0.183 4.183 13 C 0.056 3.944 14 N -0.351 5.351 15 C -0.373 4.373 16 H 0.090 0.910 17 C -0.210 4.210 18 N -0.582 5.582 19 Si 0.738 3.262 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.174 4.174 24 C -0.163 4.163 25 H 0.116 0.884 26 H 0.123 0.877 27 H 0.137 0.863 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.234 0.766 33 H 0.132 0.868 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.219 0.781 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -24.326 -3.145 -15.947 29.257 hybrid contribution 0.635 0.516 0.013 0.818 sum -23.692 -2.629 -15.934 28.672 Atomic orbital electron populations 1.23848 0.95491 1.02363 0.99948 1.22717 0.95630 0.98210 1.00279 1.21625 0.88736 0.96279 0.92345 1.88060 1.44302 1.34923 1.60459 1.22232 0.93302 0.89320 0.98827 1.20249 0.82260 0.84262 0.83599 1.90750 1.72195 1.26779 1.49491 1.45955 1.31936 1.16943 1.42219 1.22639 0.85036 0.99394 0.90855 1.23187 0.96338 0.95974 1.01337 1.22090 0.92505 0.97970 0.97686 1.23607 0.99287 0.99751 0.95681 1.21544 0.87671 0.94188 0.90996 1.42425 1.24069 1.18956 1.49681 1.19376 0.99106 0.98582 1.20221 0.91030 1.24758 0.99302 0.96834 1.00108 1.69667 1.37636 1.16117 1.34740 0.86123 0.82937 0.79133 0.78049 1.20521 1.21889 1.21875 1.23261 0.95153 0.98663 1.00361 1.23148 0.94840 1.00476 0.97881 0.88415 0.87651 0.86345 0.92544 0.92047 0.90240 0.90186 0.76639 0.86752 0.90762 0.89896 0.90101 0.92485 0.90778 0.78134 0.93565 0.92292 0.90217 0.89895 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.02 14.31 29.02 0.42 -0.61 16 2 C -0.15 -1.09 9.89 -36.03 -0.36 -1.45 16 3 C 0.09 0.61 6.35 36.00 0.23 0.83 16 4 O -0.36 -3.83 9.86 -55.14 -0.54 -4.38 16 5 C 0.04 0.34 6.42 36.01 0.23 0.57 16 6 C 0.51 5.87 7.91 -10.98 -0.09 5.79 16 7 O -0.52 -8.66 16.10 -14.35 -0.23 -8.89 16 8 N -0.72 -6.65 5.35 -52.85 -0.28 -6.93 16 9 C 0.12 1.45 4.24 -66.95 -0.28 1.16 16 10 C -0.13 -1.46 7.59 -26.28 -0.20 -1.66 16 11 C -0.10 -1.40 1.11 -154.71 -0.17 -1.57 16 12 C -0.14 -2.46 7.64 -26.28 -0.20 -2.66 16 13 C 0.17 3.33 4.48 -66.95 -0.30 3.03 16 14 N -0.71 -17.95 5.40 -52.47 -0.28 -18.23 16 15 C -0.24 -6.76 9.97 -15.06 -0.15 -6.91 16 16 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 17 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 18 N -0.93 -28.27 13.06 55.49 0.72 -27.54 16 19 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 23 C -0.14 -2.16 7.59 -26.28 -0.20 -2.36 16 24 C -0.12 -1.53 7.64 -26.28 -0.20 -1.73 16 25 H 0.10 0.44 7.90 -52.48 -0.41 0.03 16 26 H 0.11 0.49 8.06 -52.49 -0.42 0.07 16 27 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 28 H 0.06 0.30 7.86 -51.93 -0.41 -0.10 16 29 H 0.06 0.33 8.14 -51.92 -0.42 -0.10 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.40 2.33 8.73 -40.82 -0.36 1.97 16 33 H 0.11 1.59 7.47 -51.93 -0.39 1.20 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.78 8.12 -51.93 -0.42 0.36 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.49 8.10 -51.92 -0.42 1.07 16 39 H 0.38 10.22 7.92 -40.82 -0.32 9.90 16 40 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.08 1.32 8.12 -51.93 -0.42 0.89 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 371.03 15.07 5.59 5.59 Total: -1.00 -34.36 371.03 -8.77 -43.13 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -7.35 Total: 7.82 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -1.37 Total: -8.08 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: 0.16 Total: -52.70 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.77 Total: -13.27 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.36 -8.77 -43.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120827866.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.460 kcal (2) G-P(sol) polarization free energy of solvation -34.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds