Wall clock time and date at job start Tue Mar 31 2020 08:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50691 * 120.00387 * 2 1 4 4 O 1.42901 * 109.47384 * 134.99780 * 3 2 1 5 5 C 1.42897 * 114.00095 * 179.97438 * 4 3 2 6 6 C 1.50708 * 109.46984 * 180.02562 * 5 4 3 7 7 O 1.21276 * 119.99869 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99671 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99661 * 179.97438 * 8 6 5 10 10 C 1.53957 * 113.58030 * 205.00293 * 9 8 6 11 11 C 1.52917 * 86.77928 * 220.66444 * 10 9 8 12 12 C 1.52910 * 121.13486 * 259.17796 * 11 10 9 13 13 C 1.53949 * 86.78077 * 209.38575 * 12 11 10 14 14 N 1.46498 * 113.58269 * 139.33921 * 13 12 11 15 15 C 1.36938 * 119.99858 * 107.27989 * 14 13 12 16 16 H 1.07998 * 120.00416 * 359.97438 * 15 14 13 17 17 C 1.38820 * 119.99593 * 180.02562 * 15 14 13 18 18 N 1.31613 * 119.99901 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99783 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47162 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47095 * 119.99593 * 19 17 15 22 22 H 1.48499 * 109.46925 * 239.99781 * 19 17 15 23 23 C 1.52905 * 121.13340 * 150.61497 * 11 10 9 24 24 C 1.52909 * 88.04253 * 24.89691 * 11 10 9 25 25 H 1.08008 * 119.99624 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.00658 * 180.02562 * 1 2 3 27 27 H 1.07998 * 119.99448 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47357 * 14.99838 * 3 2 1 29 29 H 1.09008 * 109.47370 * 255.00106 * 3 2 1 30 30 H 1.09001 * 109.46771 * 60.00656 * 5 4 3 31 31 H 1.09000 * 109.47557 * 300.00499 * 5 4 3 32 32 H 0.96996 * 120.00391 * 0.02562 * 8 6 5 33 33 H 1.09001 * 112.88003 * 336.14559 * 9 8 6 34 34 H 1.08997 * 113.66354 * 106.19621 * 10 9 8 35 35 H 1.09002 * 113.65722 * 335.13352 * 10 9 8 36 36 H 1.09006 * 113.66074 * 323.85230 * 12 11 10 37 37 H 1.08994 * 113.66448 * 94.91195 * 12 11 10 38 38 H 1.09009 * 113.57633 * 270.12923 * 13 12 11 39 39 H 0.97003 * 119.99770 * 287.27692 * 14 13 12 40 40 H 0.96998 * 120.00002 * 180.02562 * 18 17 15 41 41 H 1.08990 * 113.66878 * 265.09053 * 23 11 10 42 42 H 1.09000 * 113.66430 * 36.05678 * 23 11 10 43 43 H 1.09001 * 113.66026 * 89.57323 * 24 11 10 44 44 H 1.08998 * 113.66179 * 220.53611 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9085 2.4347 1.0320 6 6 4.9948 2.2562 2.0613 7 8 5.0903 1.2097 2.6668 8 7 5.8600 3.2594 2.3088 9 6 6.9156 3.0861 3.3097 10 6 7.4102 4.4107 3.9189 11 6 8.8196 3.8236 3.8340 12 6 9.5060 3.2339 5.0666 13 6 10.8378 3.6552 4.4192 14 7 11.8011 4.2142 5.3709 15 6 12.9006 3.4860 5.7396 16 1 13.0574 2.4994 5.3293 17 6 13.8131 4.0156 6.6418 18 7 13.6217 5.2177 7.1423 19 14 15.3126 3.0220 7.1455 20 1 15.2958 1.7117 6.4467 21 1 16.5449 3.7642 6.7770 22 1 15.2889 2.7998 8.6136 23 6 10.0413 4.7243 3.6491 24 6 8.3207 2.9256 2.7014 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5401 -0.9352 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3856 2.1160 0.2659 29 1 2.4756 1.4867 -0.9927 30 1 3.2690 3.2694 1.3192 31 1 4.3588 2.6394 0.0607 32 1 5.7833 4.0965 1.8247 33 1 6.6735 2.3274 4.0539 34 1 7.0667 4.5779 4.9398 35 1 7.2562 5.2742 3.2718 36 1 9.2806 3.7674 5.9901 37 1 9.3868 2.1545 5.1593 38 1 11.2722 2.8887 3.7774 39 1 11.6601 5.1003 5.7397 40 1 14.2595 5.5879 7.7724 41 1 10.3498 4.8354 2.6097 42 1 9.9657 5.6772 4.1730 43 1 8.4227 3.3718 1.7121 44 1 8.7058 1.9070 2.7487 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120827866.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:37 Heat of formation + Delta-G solvation = -28.960281 kcal Electronic energy + Delta-G solvation = -22558.900487 eV Core-core repulsion = 19091.751325 eV Total energy + Delta-G solvation = -3467.149162 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.67880 -40.42683 -38.72118 -37.19446 -35.26467 -34.75930 -33.66666 -31.49496 -29.32622 -26.75810 -26.58753 -26.56528 -26.01678 -23.68571 -21.74560 -21.49229 -20.87144 -19.41942 -18.68484 -18.26126 -17.78794 -17.37092 -16.97455 -16.84588 -16.20896 -16.06163 -15.82661 -15.49215 -15.18144 -14.96381 -14.41779 -14.14376 -13.77466 -13.62512 -13.22028 -13.18739 -13.10560 -13.02231 -12.97632 -12.86181 -12.37980 -12.34225 -12.10435 -11.88604 -11.84827 -11.27299 -11.05846 -10.99528 -10.94275 -10.81740 -10.65379 -10.25290 -10.01248 -8.97287 -7.95436 -5.23076 1.20047 1.46504 1.47147 1.57091 1.57235 1.94235 2.55932 3.10538 3.36260 3.50673 3.55888 3.66809 3.77550 3.85679 4.00692 4.07464 4.18217 4.26507 4.28890 4.32149 4.34648 4.46851 4.51023 4.61613 4.62511 4.81182 4.84232 4.95364 4.98700 5.02080 5.06561 5.10506 5.14322 5.26298 5.44653 5.56423 5.62661 5.66373 5.70450 5.71497 6.11259 6.27771 6.61062 7.27629 7.33397 8.11569 8.34432 9.28079 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.048853 B = 0.002040 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.010284 B =13720.584255 C =14032.622484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.179 4.179 3 C 0.085 3.915 4 O -0.401 6.401 5 C 0.046 3.954 6 C 0.505 3.495 7 O -0.582 6.582 8 N -0.699 5.699 9 C 0.128 3.872 10 C -0.114 4.114 11 C -0.090 4.090 12 C -0.141 4.141 13 C 0.145 3.855 14 N -0.728 5.728 15 C -0.244 4.244 16 H 0.074 0.926 17 C -0.076 4.076 18 N -0.969 5.969 19 Si 0.971 3.029 20 H -0.268 1.268 21 H -0.292 1.292 22 H -0.294 1.294 23 C -0.120 4.120 24 C -0.119 4.119 25 H 0.114 0.886 26 H 0.112 0.888 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.421 0.579 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.116 0.884 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.374 0.626 40 H 0.251 0.749 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.108 0.892 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.292 -1.117 -18.729 32.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.197 4.197 3 C 0.009 3.991 4 O -0.320 6.320 5 C -0.033 4.033 6 C 0.293 3.707 7 O -0.460 6.460 8 N -0.353 5.353 9 C 0.023 3.977 10 C -0.152 4.152 11 C -0.091 4.091 12 C -0.181 4.181 13 C 0.035 3.965 14 N -0.366 5.366 15 C -0.376 4.376 16 H 0.092 0.908 17 C -0.268 4.268 18 N -0.620 5.620 19 Si 0.801 3.199 20 H -0.192 1.192 21 H -0.219 1.219 22 H -0.221 1.221 23 C -0.159 4.159 24 C -0.158 4.158 25 H 0.132 0.868 26 H 0.130 0.870 27 H 0.121 0.879 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.259 0.741 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.134 0.866 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.206 0.794 40 H 0.060 0.940 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.127 0.873 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -26.060 -2.177 -18.197 31.859 hybrid contribution 1.080 0.174 0.645 1.270 sum -24.981 -2.002 -17.552 30.596 Atomic orbital electron populations 1.24058 0.95025 1.03503 0.97833 1.22810 0.96374 0.98221 1.02330 1.21787 0.88311 0.96480 0.92500 1.88010 1.45561 1.36665 1.61782 1.22381 0.92587 0.89376 0.98958 1.21047 0.82793 0.83405 0.83488 1.90728 1.73935 1.29361 1.52026 1.45736 1.30629 1.17540 1.41345 1.22314 0.85491 0.98976 0.90915 1.23154 0.93383 0.96631 1.02033 1.21889 0.93364 0.97615 0.96264 1.23412 0.98526 0.99433 0.96771 1.21937 0.87585 0.95892 0.91070 1.42597 1.24592 1.18494 1.50879 1.19745 0.99707 0.98708 1.19457 0.90847 1.25543 1.02367 0.98049 1.00858 1.69812 1.38685 1.17739 1.35763 0.85102 0.79378 0.78168 0.77299 1.19237 1.21861 1.22143 1.23083 0.94820 0.97490 1.00469 1.23183 0.94743 0.99401 0.98437 0.86828 0.86954 0.87872 0.90651 0.90410 0.86900 0.86910 0.74057 0.89585 0.91018 0.86602 0.91536 0.93079 0.91370 0.79376 0.94027 0.90550 0.90575 0.87350 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 14.31 67.78 0.97 -0.68 16 2 C -0.18 -2.47 9.89 25.65 0.25 -2.21 16 3 C 0.08 1.02 6.35 71.23 0.45 1.47 16 4 O -0.40 -8.01 9.86 -129.94 -1.28 -9.29 16 5 C 0.05 0.58 6.42 71.24 0.46 1.04 16 6 C 0.51 10.78 7.91 87.66 0.69 11.47 16 7 O -0.58 -19.72 16.10 16.02 0.26 -19.46 16 8 N -0.70 -10.93 5.35 -439.51 -2.35 -13.28 16 9 C 0.13 2.75 4.24 45.63 0.19 2.94 16 10 C -0.11 -2.23 7.59 30.89 0.23 -2.00 16 11 C -0.09 -2.34 1.11 -52.31 -0.06 -2.40 16 12 C -0.14 -4.93 7.64 30.88 0.24 -4.69 16 13 C 0.14 5.76 4.48 45.63 0.20 5.96 16 14 N -0.73 -37.35 5.40 -319.91 -1.73 -39.07 16 15 C -0.24 -13.87 9.97 84.04 0.84 -13.03 16 16 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 17 C -0.08 -4.44 5.50 84.87 0.47 -3.97 16 18 N -0.97 -59.91 13.06 21.65 0.28 -59.63 16 19 Si 0.97 46.93 29.55 68.60 2.03 48.96 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 22 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 23 C -0.12 -3.64 7.59 30.88 0.23 -3.41 16 24 C -0.12 -2.68 7.64 30.88 0.24 -2.45 16 25 H 0.11 0.73 7.90 -2.91 -0.02 0.71 16 26 H 0.11 0.89 8.06 -2.91 -0.02 0.87 16 27 H 0.10 1.65 8.06 -2.91 -0.02 1.63 16 28 H 0.08 0.58 7.86 -2.39 -0.02 0.56 16 29 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.42 2.98 8.73 -92.71 -0.81 2.17 16 33 H 0.09 2.41 7.47 -2.39 -0.02 2.39 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 35 H 0.12 1.59 8.12 -2.39 -0.02 1.57 16 36 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 37 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.07 2.76 8.10 -2.38 -0.02 2.74 16 39 H 0.37 20.42 7.92 -92.71 -0.73 19.68 16 40 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 41 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.08 2.40 8.12 -2.39 -0.02 2.38 16 43 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -78.03 371.03 2.06 -75.97 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: -0.56 Total: 27.75 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: 5.41 Total: -11.94 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -3.80 Total: -111.99 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -1.02 Total: -28.75 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -78.03 2.06 -75.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120827866.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.009 kcal (2) G-P(sol) polarization free energy of solvation -78.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds