Wall clock time and date at job start Tue Mar 31 2020 06:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46985 * 2 1 4 4 N 1.46502 * 109.47242 * 180.02562 * 3 2 1 5 5 C 1.34224 * 125.74604 * 125.33206 * 4 3 2 6 6 C 1.38129 * 107.41058 * 180.12360 * 5 4 3 7 7 C 1.47285 * 126.42758 * 179.83647 * 6 5 4 8 8 O 1.21522 * 119.99814 * 179.41804 * 7 6 5 9 9 O 1.34754 * 119.99959 * 359.69412 * 7 6 5 10 10 C 1.45201 * 116.99984 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46934 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.47174 * 299.99624 * 11 10 9 13 13 C 1.52996 * 109.47499 * 60.00048 * 11 10 9 14 14 C 1.50709 * 109.46878 * 180.02562 * 11 10 9 15 15 H 1.07994 * 119.99750 * 1.35979 * 14 11 10 16 16 C 1.37872 * 119.99650 * 181.35781 * 14 11 10 17 17 N 1.31513 * 119.99760 * 193.96238 * 16 14 11 18 18 Si 1.86797 * 120.00413 * 13.96341 * 16 14 11 19 19 H 1.48496 * 109.47237 * 84.55395 * 18 16 14 20 20 H 1.48501 * 109.47274 * 204.55330 * 18 16 14 21 21 H 1.48503 * 109.47220 * 324.55139 * 18 16 14 22 22 C 1.41342 * 107.14174 * 359.58151 * 6 5 4 23 23 C 1.50699 * 125.99064 * 180.28149 * 22 6 5 24 24 N 1.30430 * 108.01583 * 0.25700 * 22 6 5 25 25 H 1.08999 * 109.47345 * 59.99649 * 1 2 3 26 26 H 1.09004 * 109.46938 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46568 * 299.99333 * 1 2 3 28 28 H 1.09003 * 109.46911 * 240.00806 * 2 1 3 29 29 H 1.08999 * 109.47345 * 120.00351 * 2 1 3 30 30 H 1.09003 * 109.47295 * 60.01006 * 3 2 1 31 31 H 1.08998 * 109.47875 * 300.00469 * 3 2 1 32 32 H 1.08005 * 126.29737 * 359.96930 * 5 4 3 33 33 H 1.09000 * 109.47057 * 299.99838 * 10 9 7 34 34 H 1.08998 * 109.46965 * 59.99948 * 10 9 7 35 35 H 1.08993 * 109.46640 * 69.31880 * 12 11 10 36 36 H 1.08999 * 109.47405 * 189.31783 * 12 11 10 37 37 H 1.09001 * 109.46713 * 309.32327 * 12 11 10 38 38 H 1.08991 * 109.47116 * 59.99752 * 13 11 10 39 39 H 1.08998 * 109.47033 * 180.02562 * 13 11 10 40 40 H 1.09002 * 109.46878 * 299.99906 * 13 11 10 41 41 H 0.97001 * 120.00217 * 180.02562 * 17 16 14 42 42 H 1.08999 * 109.47110 * 89.99306 * 23 22 6 43 43 H 1.08997 * 109.47544 * 209.99441 * 23 22 6 44 44 H 1.09002 * 109.46975 * 330.00014 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2887 2.0727 -0.8896 6 6 5.6000 1.8191 -0.5373 7 6 6.8027 2.3071 -1.2336 8 8 7.9063 2.0197 -0.8139 9 8 6.6792 3.0769 -2.3327 10 6 7.9071 3.5222 -2.9670 11 6 7.5684 4.3786 -4.1888 12 6 6.7527 3.5491 -5.1827 13 6 6.7516 5.5950 -3.7485 14 6 8.8428 4.8402 -4.8475 15 1 9.7985 4.5336 -4.4487 16 6 8.7886 5.6539 -5.9592 17 7 9.8636 5.8346 -6.6949 18 14 7.1883 6.4999 -6.4204 19 1 7.0576 7.7643 -5.6528 20 1 7.1889 6.8014 -7.8745 21 1 6.0460 5.6064 -6.1007 22 6 5.5711 1.0084 0.6201 23 6 6.7721 0.4867 1.3662 24 7 4.3228 0.7913 0.9295 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5137 0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.9554 2.6666 -1.7278 33 1 8.4880 4.1134 -2.2591 34 1 8.4891 2.6555 -3.2803 35 1 5.7637 3.3547 -4.7680 36 1 6.6526 4.0988 -6.1186 37 1 7.2608 2.6030 -5.3694 38 1 7.3326 6.1858 -3.0405 39 1 6.5100 6.2048 -4.6191 40 1 5.8298 5.2607 -3.2723 41 1 9.8256 6.4073 -7.4768 42 1 7.0611 1.2027 2.1355 43 1 6.5244 -0.4670 1.8321 44 1 7.5996 0.3473 0.6705 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122928200.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:35 Heat of formation + Delta-G solvation = -12.879172 kcal Electronic energy + Delta-G solvation = -23837.011863 eV Core-core repulsion = 20370.560030 eV Total energy + Delta-G solvation = -3466.451833 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.55130 -39.51428 -36.76062 -35.82039 -34.93710 -32.76159 -31.74064 -30.63870 -28.99790 -26.68649 -26.26980 -25.70910 -24.87649 -22.89534 -22.10748 -20.80310 -19.48870 -19.06105 -17.61689 -16.67065 -16.15607 -15.93880 -15.73691 -15.41054 -15.17218 -14.91732 -14.41844 -13.86524 -13.34443 -13.28710 -13.15397 -12.84938 -12.84350 -12.59127 -12.35321 -12.30645 -12.16255 -11.96398 -11.86422 -11.76300 -11.57610 -11.34541 -10.90430 -10.45886 -10.32571 -10.22761 -10.05947 -9.89629 -9.68192 -9.48749 -9.09266 -8.79265 -8.64370 -8.45967 -6.15022 -4.12978 1.37281 2.03885 2.09854 3.26895 3.32651 3.34914 3.40412 3.43196 4.01692 4.37071 4.37407 4.51905 4.58399 4.73350 4.83386 4.98813 5.07703 5.16879 5.21844 5.38498 5.52073 5.53373 5.58495 5.65383 5.76607 5.83129 5.86572 5.93518 5.96143 6.17238 6.30720 6.44345 6.54233 6.60629 6.64251 6.71480 6.78186 6.91017 7.13587 7.23650 7.45146 7.46458 7.72324 8.33367 8.43650 8.88294 9.48593 10.97869 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019815 B = 0.003623 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.709447 B = 7726.629389 C = 8834.489066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.129 3.871 4 N -0.361 5.361 5 C 0.127 3.873 6 C -0.274 4.274 7 C 0.536 3.464 8 O -0.519 6.519 9 O -0.355 6.355 10 C 0.096 3.904 11 C 0.043 3.957 12 C -0.138 4.138 13 C -0.145 4.145 14 C -0.518 4.518 15 H 0.076 0.924 16 C 0.078 3.922 17 N -0.891 5.891 18 Si 0.885 3.115 19 H -0.285 1.285 20 H -0.305 1.305 21 H -0.247 1.247 22 C 0.135 3.865 23 C -0.079 4.079 24 N -0.303 5.303 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.192 0.808 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.030 0.970 36 H 0.053 0.947 37 H 0.043 0.957 38 H 0.049 0.951 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.265 0.735 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.304 -9.582 13.298 24.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C 0.009 3.991 4 N -0.139 5.139 5 C -0.024 4.024 6 C -0.287 4.287 7 C 0.380 3.620 8 O -0.410 6.410 9 O -0.272 6.272 10 C 0.023 3.977 11 C 0.042 3.958 12 C -0.196 4.196 13 C -0.202 4.202 14 C -0.555 4.555 15 H 0.094 0.906 16 C -0.125 4.125 17 N -0.527 5.527 18 Si 0.718 3.282 19 H -0.213 1.213 20 H -0.234 1.234 21 H -0.172 1.172 22 C -0.032 4.032 23 C -0.137 4.137 24 N -0.124 5.124 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.119 0.881 32 H 0.209 0.791 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.832 -10.128 14.038 25.578 hybrid contribution -0.142 1.137 -1.006 1.525 sum -18.974 -8.990 13.032 24.711 Atomic orbital electron populations 1.21713 0.94277 1.02616 1.02210 1.21804 0.96482 0.95176 1.04013 1.21955 0.73363 0.99435 1.04361 1.48487 1.06851 1.37839 1.20705 1.23338 0.90276 0.94561 0.94254 1.19491 0.91410 1.14330 1.03460 1.19931 0.87598 0.75704 0.78737 1.90773 1.27641 1.56521 1.66027 1.86506 1.39821 1.61626 1.39205 1.23364 0.82022 0.98046 0.94258 1.18583 0.95979 0.91151 0.90065 1.22216 0.97677 0.99824 0.99865 1.22281 0.98940 0.99207 0.99756 1.20683 0.91365 1.31469 1.11999 0.90578 1.24914 0.96325 0.96167 0.95095 1.69945 1.29325 1.37628 1.15845 0.87286 0.85391 0.80125 0.75440 1.21281 1.23378 1.17243 1.22482 0.93532 0.94132 0.93090 1.20369 0.92645 1.00699 0.99999 1.77126 1.00913 1.20678 1.13718 0.92281 0.91869 0.92260 0.91197 0.90258 0.89307 0.88119 0.79145 0.91818 0.91713 0.95070 0.92802 0.93776 0.93169 0.94274 0.94200 0.92486 0.90108 0.91002 0.88547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.91 37.16 0.37 -0.31 16 2 C -0.14 -0.89 6.11 -26.73 -0.16 -1.05 16 3 C 0.13 0.88 6.49 -4.04 -0.03 0.85 16 4 N -0.36 -3.94 3.65 -60.79 -0.22 -4.16 16 5 C 0.13 1.51 11.29 -16.55 -0.19 1.32 16 6 C -0.27 -4.08 6.13 -105.08 -0.64 -4.72 16 7 C 0.54 9.55 7.95 34.41 0.27 9.82 16 8 O -0.52 -10.28 14.71 -19.28 -0.28 -10.57 16 9 O -0.36 -6.63 8.89 -40.64 -0.36 -6.99 16 10 C 0.10 2.02 4.26 37.16 0.16 2.18 16 11 C 0.04 0.99 0.58 -155.65 -0.09 0.90 16 12 C -0.14 -2.98 7.58 37.16 0.28 -2.70 16 13 C -0.15 -3.10 7.55 37.16 0.28 -2.82 16 14 C -0.52 -14.16 8.62 -34.44 -0.30 -14.45 16 15 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 16 C 0.08 2.19 5.32 -17.82 -0.09 2.09 16 17 N -0.89 -26.78 13.96 55.43 0.77 -26.01 16 18 Si 0.89 21.35 22.79 -169.99 -3.87 17.48 16 19 H -0.29 -6.83 7.10 56.52 0.40 -6.43 16 20 H -0.31 -7.47 7.11 56.52 0.40 -7.06 16 21 H -0.25 -5.46 4.65 56.52 0.26 -5.20 16 22 C 0.13 1.89 7.27 -82.01 -0.60 1.29 16 23 C -0.08 -0.94 9.92 36.01 0.36 -0.58 16 24 N -0.30 -3.98 12.33 33.90 0.42 -3.57 16 25 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.10 0.45 8.06 -51.93 -0.42 0.03 16 32 H 0.19 1.76 8.06 -52.48 -0.42 1.33 16 33 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 34 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.03 0.59 7.94 -51.93 -0.41 0.17 16 36 H 0.05 1.21 4.30 -51.93 -0.22 0.98 16 37 H 0.04 0.92 8.12 -51.93 -0.42 0.50 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.04 0.87 2.25 -51.93 -0.12 0.75 16 40 H 0.04 0.74 7.68 -51.93 -0.40 0.35 16 41 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.10 1.28 6.56 -51.93 -0.34 0.94 16 LS Contribution 352.96 15.07 5.32 5.32 Total: -1.00 -32.43 352.96 -5.71 -38.14 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -7.10 Total: -1.44 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -0.38 Total: -8.19 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 0.97 Total: -33.73 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.65 Total: -17.56 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -3.87 Total: 17.48 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.43 -5.71 -38.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122928200.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.258 kcal (2) G-P(sol) polarization free energy of solvation -32.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds