Wall clock time and date at job start Tue Mar 31 2020 06:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46898 * 2 1 4 4 N 1.46908 * 109.46896 * 181.60077 * 3 2 1 5 5 C 1.46892 * 111.00017 * 75.90293 * 4 3 2 6 6 C 1.50695 * 109.47166 * 195.90671 * 5 4 3 7 7 H 1.08002 * 119.99956 * 355.44446 * 6 5 4 8 8 C 1.37880 * 119.99997 * 175.44439 * 6 5 4 9 9 N 1.31513 * 120.00337 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99877 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.46932 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47023 * 120.00002 * 10 8 6 13 13 H 1.48505 * 109.46882 * 239.99586 * 10 8 6 14 14 C 1.46901 * 111.00009 * 199.85752 * 4 3 2 15 15 C 1.50708 * 109.47087 * 66.04440 * 14 4 3 16 16 C 1.38051 * 119.52767 * 94.73159 * 15 14 4 17 17 C 1.38781 * 119.32728 * 179.71134 * 16 15 14 18 18 C 1.38800 * 118.44060 * 0.54897 * 17 16 15 19 19 O 1.35998 * 120.49068 * 179.75623 * 18 17 16 20 20 C 1.42896 * 117.00016 * 359.97438 * 19 18 17 21 21 C 1.39348 * 119.01437 * 359.73392 * 18 17 16 22 22 O 1.35766 * 119.71083 * 180.02562 * 21 18 17 23 23 C 1.42902 * 116.99880 * 179.97438 * 22 21 18 24 24 N 1.31997 * 119.53167 * 274.99910 * 15 14 4 25 25 H 1.08999 * 109.47304 * 60.00120 * 1 2 3 26 26 H 1.09005 * 109.46851 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47258 * 300.00091 * 1 2 3 28 28 H 1.09002 * 109.47025 * 240.00022 * 2 1 3 29 29 H 1.08999 * 109.47192 * 120.00660 * 2 1 3 30 30 H 1.08999 * 109.46948 * 61.60620 * 3 2 1 31 31 H 1.09002 * 109.47633 * 301.60174 * 3 2 1 32 32 H 1.08996 * 109.47399 * 315.90889 * 5 4 3 33 33 H 1.09005 * 109.47131 * 75.90906 * 5 4 3 34 34 H 0.96998 * 120.00728 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.47170 * 186.04751 * 14 4 3 36 36 H 1.09003 * 109.46934 * 306.05077 * 14 4 3 37 37 H 1.08001 * 120.33499 * 359.97438 * 16 15 14 38 38 H 1.08003 * 120.77975 * 180.27859 * 17 16 15 39 39 H 1.08999 * 109.47166 * 299.99566 * 20 19 18 40 40 H 1.09000 * 109.47198 * 60.00323 * 20 19 18 41 41 H 1.09003 * 109.47236 * 179.97438 * 20 19 18 42 42 H 1.09001 * 109.47354 * 300.00180 * 23 22 21 43 43 H 1.09009 * 109.46782 * 60.00263 * 23 22 21 44 44 H 1.08999 * 109.47387 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5085 1.4427 -0.0387 5 6 3.9997 1.1211 -1.3852 6 6 5.4578 0.7476 -1.3121 7 1 5.9873 0.8197 -0.3736 8 6 6.1159 0.3138 -2.4434 9 7 5.4710 0.2255 -3.5862 10 14 7.9232 -0.1499 -2.3527 11 1 8.4126 0.0359 -0.9631 12 1 8.0903 -1.5705 -2.7512 13 1 8.7034 0.7172 -3.2719 14 6 4.0472 2.7282 0.4251 15 6 3.7270 2.9091 1.8866 16 6 4.6579 2.5419 2.8376 17 6 4.3610 2.7159 4.1821 18 6 3.1245 3.2464 4.5228 19 8 2.7882 3.4301 5.8277 20 6 3.7585 3.0537 6.8068 21 6 2.2330 3.5885 3.5079 22 8 1.0199 4.1090 3.8251 23 6 0.1517 4.4395 2.7392 24 7 2.5585 3.4116 2.2393 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.7003 1.9479 0.9040 31 1 1.6534 1.9646 -0.8753 32 1 3.4301 0.2844 -1.7896 33 1 3.8791 1.9895 -2.0330 34 1 5.9340 -0.0793 -4.3822 35 1 5.1281 2.7407 0.2857 36 1 3.5974 3.5388 -0.1484 37 1 5.6091 2.1273 2.5382 38 1 5.0737 2.4408 4.9456 39 1 3.9807 1.9911 6.7085 40 1 4.6705 3.6311 6.6554 41 1 3.3647 3.2521 7.8037 42 1 0.6322 5.1830 2.1032 43 1 -0.0577 3.5429 2.1557 44 1 -0.7817 4.8443 3.1304 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139107148.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:19 Heat of formation + Delta-G solvation = -56.345382 kcal Electronic energy + Delta-G solvation = -24311.266264 eV Core-core repulsion = 20842.929595 eV Total energy + Delta-G solvation = -3468.336669 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.99037 -39.56157 -39.29386 -38.00428 -34.94136 -34.04814 -32.95534 -31.86155 -29.48132 -28.81827 -28.06792 -26.93204 -25.52860 -24.02425 -23.60127 -22.53568 -21.39113 -19.36226 -18.84520 -18.52729 -18.10872 -17.38464 -16.84209 -16.30167 -16.19218 -15.98722 -15.80618 -15.60142 -15.32443 -14.90176 -14.55757 -14.33071 -14.13241 -13.94914 -13.58197 -13.36689 -13.02984 -12.94488 -12.75443 -12.60269 -12.57492 -12.37263 -12.25553 -12.20491 -12.05730 -11.98206 -11.83621 -11.45639 -11.20050 -10.74270 -10.56113 -10.51368 -9.08278 -8.90340 -8.15394 -6.25019 0.12973 0.22348 1.44680 1.45497 1.58590 2.02734 2.33240 2.43761 2.61574 3.14364 3.21354 3.48629 3.73707 3.89291 4.01961 4.10287 4.21385 4.33582 4.42321 4.43149 4.44556 4.47187 4.52824 4.54683 4.65986 4.75761 4.76539 4.81778 4.83693 4.96210 5.00410 5.09805 5.14982 5.17554 5.28206 5.33000 5.35214 5.42501 5.71456 5.97259 6.10181 6.35859 6.41939 6.61136 6.86253 6.90522 7.44362 8.95957 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015071 B = 0.004492 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.377166 B = 6232.092889 C = 7446.562979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 C 0.053 3.947 4 N -0.531 5.531 5 C 0.209 3.791 6 C -0.516 4.516 7 H 0.069 0.931 8 C 0.002 3.998 9 N -0.937 5.937 10 Si 0.968 3.032 11 H -0.258 1.258 12 H -0.282 1.282 13 H -0.281 1.281 14 C 0.119 3.881 15 C 0.130 3.870 16 C -0.146 4.146 17 C -0.123 4.123 18 C 0.053 3.947 19 O -0.321 6.321 20 C 0.014 3.986 21 C 0.277 3.723 22 O -0.313 6.313 23 C 0.039 3.961 24 N -0.511 5.511 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.040 0.960 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.010 0.990 32 H 0.011 0.989 33 H -0.041 1.041 34 H 0.263 0.737 35 H 0.092 0.908 36 H 0.027 0.973 37 H 0.153 0.847 38 H 0.181 0.819 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.121 0.879 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.525 6.010 18.902 20.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.151 4.151 3 C -0.075 4.075 4 N -0.256 5.256 5 C 0.083 3.917 6 C -0.555 4.555 7 H 0.087 0.913 8 C -0.196 4.196 9 N -0.578 5.578 10 Si 0.793 3.207 11 H -0.181 1.181 12 H -0.208 1.208 13 H -0.207 1.207 14 C -0.010 4.010 15 C -0.005 4.005 16 C -0.167 4.167 17 C -0.148 4.148 18 C 0.004 3.996 19 O -0.234 6.234 20 C -0.080 4.080 21 C 0.096 3.904 22 O -0.220 6.220 23 C -0.056 4.056 24 N -0.237 5.237 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.028 0.972 32 H 0.029 0.971 33 H -0.024 1.024 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.046 0.954 37 H 0.171 0.829 38 H 0.198 0.802 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.139 0.861 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.231 5.974 18.751 20.642 hybrid contribution 1.167 0.051 -0.959 1.511 sum -5.064 6.025 17.791 19.454 Atomic orbital electron populations 1.21655 0.93833 1.02300 1.01776 1.21431 0.96525 0.96065 1.01109 1.22244 0.87976 0.97115 1.00169 1.62091 1.07405 1.29176 1.26890 1.19429 0.95463 0.93261 0.83527 1.21500 0.95283 1.43293 0.95375 0.91299 1.25899 1.03202 0.95640 0.94875 1.70100 1.38422 1.48622 1.00612 0.85353 0.79124 0.77558 0.78697 1.18137 1.20845 1.20726 1.20763 1.00925 0.90495 0.88800 1.20697 0.88518 0.94904 0.96336 1.21840 1.01816 1.00893 0.92134 1.21805 0.95247 0.99948 0.97818 1.19014 0.93758 1.02274 0.84525 1.86155 1.44525 1.81031 1.11705 1.23436 0.92542 1.01093 0.90930 1.19340 0.87240 0.96314 0.87512 1.86283 1.23161 1.76883 1.35703 1.23002 0.92905 1.00606 0.89102 1.67104 1.21317 1.18624 1.16627 0.92916 0.91438 0.92169 0.94144 0.92394 0.89684 0.97162 0.97065 1.02377 0.92850 0.88964 0.95442 0.82933 0.80167 0.91511 0.91248 0.86062 0.92982 0.93084 0.85756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 9.91 71.98 0.71 -3.19 16 2 C -0.11 -4.15 6.07 30.59 0.19 -3.97 16 3 C 0.05 2.11 4.84 86.30 0.42 2.53 16 4 N -0.53 -23.65 4.37 -905.37 -3.96 -27.61 16 5 C 0.21 11.22 4.55 85.56 0.39 11.61 16 6 C -0.52 -28.68 8.53 25.60 0.22 -28.46 16 7 H 0.07 3.67 7.42 -2.91 -0.02 3.65 16 8 C 0.00 0.09 5.46 84.66 0.46 0.55 16 9 N -0.94 -56.28 13.29 21.45 0.28 -56.00 16 10 Si 0.97 43.51 29.54 68.60 2.03 45.54 16 11 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 13 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 14 C 0.12 4.73 5.11 85.56 0.44 5.17 16 15 C 0.13 4.49 5.77 42.49 0.25 4.73 16 16 C -0.15 -4.21 9.71 22.36 0.22 -3.99 16 17 C -0.12 -2.89 9.14 22.53 0.21 -2.69 16 18 C 0.05 1.43 6.72 22.67 0.15 1.59 16 19 O -0.32 -7.69 10.29 -79.77 -0.82 -8.51 16 20 C 0.01 0.19 9.83 113.37 1.11 1.30 16 21 C 0.28 8.71 7.50 84.91 0.64 9.35 16 22 O -0.31 -9.19 10.27 -77.17 -0.79 -9.98 16 23 C 0.04 0.89 10.38 113.37 1.18 2.07 16 24 N -0.51 -17.28 7.28 -296.61 -2.16 -19.44 16 25 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 27 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.04 1.68 6.72 -2.39 -0.02 1.66 16 29 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 30 H 0.08 3.21 5.49 -2.39 -0.01 3.20 16 31 H 0.01 0.42 8.00 -2.39 -0.02 0.40 16 32 H 0.01 0.66 6.52 -2.39 -0.02 0.64 16 33 H -0.04 -2.42 8.05 -2.38 -0.02 -2.44 16 34 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 35 H 0.09 3.76 6.91 -2.39 -0.02 3.74 16 36 H 0.03 1.13 8.12 -2.39 -0.02 1.11 16 37 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 38 H 0.18 2.77 6.44 -2.91 -0.02 2.75 16 39 H 0.07 0.74 7.70 -2.39 -0.02 0.72 16 40 H 0.07 0.71 7.70 -2.39 -0.02 0.69 16 41 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.05 1.24 8.11 -2.39 -0.02 1.22 16 43 H 0.05 1.24 8.11 -2.38 -0.02 1.22 16 44 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -68.84 360.40 2.13 -66.71 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.98 Total: 12.69 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 6.57 Total: -3.40 kcal Atomic # 7 Polarization: -97.21 SS G_CDS: -5.83 Total: -103.04 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -1.61 Total: -18.50 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -68.84 2.13 -66.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139107148.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.366 kcal (2) G-P(sol) polarization free energy of solvation -68.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds