Wall clock time and date at job start Tue Mar 31 2020 06:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46830 * 2 1 4 4 N 1.46903 * 109.46818 * 179.90982 * 3 2 1 5 5 C 1.46900 * 111.00325 * 298.27601 * 4 3 2 6 6 C 1.50709 * 109.46860 * 293.23291 * 5 4 3 7 7 H 1.08001 * 119.99718 * 354.96522 * 6 5 4 8 8 C 1.37871 * 119.99818 * 174.96574 * 6 5 4 9 9 N 1.31517 * 120.00256 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99897 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46859 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47096 * 120.00237 * 10 8 6 13 13 H 1.48501 * 109.47347 * 240.00191 * 10 8 6 14 14 C 1.46904 * 111.00014 * 62.22849 * 4 3 2 15 15 C 1.50703 * 109.47172 * 66.04544 * 14 4 3 16 16 C 1.39793 * 126.07571 * 269.95849 * 15 14 4 17 17 C 1.37993 * 106.96899 * 179.77489 * 16 15 14 18 18 C 1.46496 * 126.26941 * 180.25347 * 17 16 15 19 19 O 1.21622 * 119.99551 * 0.19283 * 18 17 16 20 20 O 1.34893 * 120.00109 * 180.18713 * 18 17 16 21 21 C 1.45200 * 116.99922 * 180.02562 * 20 18 17 22 22 N 1.37704 * 107.46983 * 0.41558 * 17 16 15 23 23 C 1.46505 * 125.63490 * 179.84103 * 22 17 16 24 24 C 1.34958 * 108.72808 * 359.57372 * 22 17 16 25 25 H 1.08995 * 109.46873 * 59.99648 * 1 2 3 26 26 H 1.09001 * 109.46966 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46864 * 299.99975 * 1 2 3 28 28 H 1.09001 * 109.47017 * 240.00791 * 2 1 3 29 29 H 1.08995 * 109.47323 * 120.00064 * 2 1 3 30 30 H 1.08996 * 109.46934 * 59.91294 * 3 2 1 31 31 H 1.08994 * 109.47275 * 299.90983 * 3 2 1 32 32 H 1.09005 * 109.47313 * 53.22429 * 5 4 3 33 33 H 1.08995 * 109.47382 * 173.23025 * 5 4 3 34 34 H 0.97003 * 119.99595 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.46937 * 306.04230 * 14 4 3 36 36 H 1.08997 * 109.46992 * 186.04656 * 14 4 3 37 37 H 1.08004 * 126.51912 * 0.03382 * 16 15 14 38 38 H 1.09003 * 109.46597 * 60.00244 * 21 20 18 39 39 H 1.08999 * 109.47202 * 180.02562 * 21 20 18 40 40 H 1.09000 * 109.47092 * 300.00549 * 21 20 18 41 41 H 1.09006 * 109.46441 * 269.71755 * 23 22 17 42 42 H 1.09000 * 109.46874 * 149.71927 * 23 22 17 43 43 H 1.08994 * 109.46992 * 29.71482 * 23 22 17 44 44 H 1.08000 * 125.50520 * 180.28141 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4426 0.0022 5 6 4.0338 0.7936 1.2111 6 6 3.6887 1.6268 2.4185 7 1 3.2071 2.5853 2.2934 8 6 3.9879 1.1653 3.6828 9 7 4.5748 -0.0017 3.8351 10 14 3.5609 2.1984 5.1795 11 1 2.9116 3.4600 4.7411 12 1 2.6301 1.4412 6.0544 13 1 4.8010 2.5150 5.9326 14 6 4.0373 0.8029 -1.2102 15 6 3.6805 1.6363 -2.4141 16 6 2.5223 1.5126 -3.1869 17 6 2.5963 2.4686 -4.1794 18 6 1.5979 2.7134 -5.2231 19 8 0.5850 2.0415 -5.2651 20 8 1.8019 3.6841 -6.1373 21 6 0.7702 3.8710 -7.1417 22 7 3.7823 3.1478 -4.0114 23 6 4.2633 4.2466 -4.8527 24 6 4.4257 2.6381 -2.9401 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.6754 1.9568 0.8892 31 1 1.6780 1.9559 -0.8907 32 1 3.5895 -0.1965 1.3139 33 1 5.1167 0.6994 1.1320 34 1 4.7856 -0.3262 4.7246 35 1 3.6031 -0.1914 -1.3150 36 1 5.1214 0.7198 -1.1342 37 1 1.7197 0.8063 -3.0337 38 1 -0.1712 4.1220 -6.6531 39 1 1.0588 4.6800 -7.8128 40 1 0.6488 2.9509 -7.7134 41 1 4.8606 3.8433 -5.6705 42 1 4.8752 4.9214 -4.2542 43 1 3.4119 4.7923 -5.2594 44 1 5.3801 2.9745 -2.5630 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139373003.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:38 Heat of formation + Delta-G solvation = -33.860761 kcal Electronic energy + Delta-G solvation = -24067.927390 eV Core-core repulsion = 20600.565727 eV Total energy + Delta-G solvation = -3467.361663 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.47332 -39.93050 -37.30692 -36.53492 -33.25586 -32.69742 -31.68310 -30.03745 -28.21670 -27.43561 -26.43682 -25.50177 -23.55870 -22.89928 -21.96463 -20.09468 -19.93365 -19.03133 -17.22468 -17.05000 -16.60361 -16.08342 -15.63390 -15.30801 -14.89603 -14.60817 -14.25752 -14.08347 -13.46035 -13.41401 -13.25717 -13.22349 -12.83489 -12.45919 -12.34475 -12.20441 -12.12577 -11.78108 -11.39613 -11.07170 -11.01689 -10.90629 -10.88544 -10.73957 -10.65294 -10.56142 -10.37860 -9.85788 -9.57801 -9.13134 -8.52254 -8.36592 -8.07312 -6.99906 -5.96336 -3.96474 1.25655 2.50353 2.75440 2.85085 3.21971 3.34377 3.42002 3.47246 4.48943 4.62106 4.74700 4.84820 4.93832 5.06505 5.11874 5.24722 5.31677 5.38113 5.39390 5.50844 5.56462 5.67759 5.71830 5.93811 5.98403 6.07656 6.24138 6.26546 6.29012 6.44224 6.51691 6.56904 6.65558 6.88260 6.90211 7.08767 7.13213 7.26510 7.42057 7.54425 7.68458 7.90251 8.19971 8.33262 8.66874 9.12629 9.67457 11.14212 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022072 B = 0.003570 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.289168 B = 7841.778631 C = 8371.435840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.163 4.163 3 C 0.068 3.932 4 N -0.531 5.531 5 C 0.187 3.813 6 C -0.499 4.499 7 H 0.062 0.938 8 C 0.054 3.946 9 N -0.900 5.900 10 Si 0.893 3.107 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.118 3.882 15 C -0.154 4.154 16 C -0.079 4.079 17 C -0.066 4.066 18 C 0.539 3.461 19 O -0.505 6.505 20 O -0.366 6.366 21 C 0.037 3.963 22 N -0.424 5.424 23 C 0.069 3.931 24 C 0.054 3.946 25 H 0.046 0.954 26 H 0.044 0.956 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.003 0.997 33 H 0.024 0.976 34 H 0.259 0.741 35 H 0.037 0.963 36 H 0.072 0.928 37 H 0.146 0.854 38 H 0.063 0.937 39 H 0.100 0.900 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.642 6.967 -20.389 21.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.202 4.202 3 C -0.060 4.060 4 N -0.254 5.254 5 C 0.062 3.938 6 C -0.538 4.538 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.212 1.212 14 C -0.011 4.011 15 C -0.160 4.160 16 C -0.107 4.107 17 C -0.174 4.174 18 C 0.386 3.614 19 O -0.393 6.393 20 O -0.283 6.283 21 C -0.057 4.057 22 N -0.099 5.099 23 C -0.072 4.072 24 C -0.083 4.083 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.021 0.979 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.090 0.910 37 H 0.164 0.836 38 H 0.082 0.918 39 H 0.118 0.882 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.113 0.887 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -2.631 7.464 -20.551 22.022 hybrid contribution -0.592 -0.335 0.785 1.038 sum -3.222 7.129 -19.767 21.258 Atomic orbital electron populations 1.21652 0.96648 1.00569 1.01195 1.22167 0.95443 1.00590 1.02010 1.22011 0.88450 0.94277 1.01286 1.62357 1.06553 1.54627 1.01858 1.19796 0.94940 0.93383 0.85645 1.21198 1.38318 1.04285 0.90028 0.91958 1.24966 0.95581 0.95110 0.98986 1.69969 1.42595 1.18866 1.22566 0.86510 0.77988 0.80451 0.82880 1.19712 1.21222 1.21150 1.20424 0.99554 0.93627 0.87470 1.19509 0.95765 1.01057 0.99655 1.21280 0.98633 0.97675 0.93070 1.19182 0.90619 1.04640 1.02974 1.19871 0.84719 0.77353 0.79495 1.90893 1.27750 1.47598 1.73053 1.86595 1.48498 1.53089 1.40152 1.23239 0.90444 1.02453 0.89527 1.43787 1.15470 1.27143 1.23493 1.22217 1.01783 0.88396 0.94808 1.21850 0.99775 0.97335 0.89330 0.93459 0.93728 0.92872 0.92982 0.90744 0.90599 0.92657 0.97912 0.95833 0.93130 0.94521 0.90973 0.83608 0.91812 0.88196 0.91877 0.90768 0.89573 0.88701 0.81006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.91 37.16 0.37 -1.92 16 2 C -0.16 -3.03 5.28 -26.73 -0.14 -3.18 16 3 C 0.07 1.36 4.92 -3.82 -0.02 1.34 16 4 N -0.53 -11.28 4.69 -237.50 -1.11 -12.40 16 5 C 0.19 4.77 4.52 -4.97 -0.02 4.74 16 6 C -0.50 -13.89 8.40 -34.44 -0.29 -14.18 16 7 H 0.06 1.75 7.35 -52.49 -0.39 1.36 16 8 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 9 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 10 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 C 0.12 2.10 5.24 -4.97 -0.03 2.08 16 15 C -0.15 -2.42 4.96 -105.02 -0.52 -2.94 16 16 C -0.08 -1.24 9.21 -39.09 -0.36 -1.60 16 17 C -0.07 -0.95 6.89 -81.99 -0.56 -1.52 16 18 C 0.54 7.58 7.92 34.06 0.27 7.85 16 19 O -0.50 -8.30 16.68 -19.36 -0.32 -8.62 16 20 O -0.37 -3.98 7.99 -41.02 -0.33 -4.31 16 21 C 0.04 0.28 10.57 101.05 1.07 1.35 16 22 N -0.42 -5.23 3.15 -120.40 -0.38 -5.61 16 23 C 0.07 0.56 10.57 59.85 0.63 1.19 16 24 C 0.05 0.72 11.26 -17.16 -0.19 0.53 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.92 6.33 -51.93 -0.33 0.59 16 29 H 0.07 1.60 6.29 -51.93 -0.33 1.28 16 30 H 0.08 1.67 6.97 -51.93 -0.36 1.31 16 31 H 0.06 1.04 6.19 -51.93 -0.32 0.72 16 32 H 0.00 0.08 6.02 -51.93 -0.31 -0.23 16 33 H 0.02 0.64 7.92 -51.93 -0.41 0.23 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.04 0.66 6.07 -51.93 -0.32 0.34 16 36 H 0.07 1.25 7.92 -51.93 -0.41 0.84 16 37 H 0.15 2.30 8.06 -52.48 -0.42 1.88 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.76 6.13 -51.93 -0.32 0.44 16 44 H 0.17 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 358.49 15.07 5.40 5.40 Total: -1.00 -32.36 358.49 -7.78 -40.13 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.86 Total: -0.63 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 0.11 Total: -4.81 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: -0.76 Total: -43.86 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -0.65 Total: -12.93 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.36 -7.78 -40.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139373003.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.271 kcal (2) G-P(sol) polarization free energy of solvation -32.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds