Wall clock time and date at job start Tue Mar 31 2020 06:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46830 * 2 1 4 4 N 1.46903 * 109.46818 * 179.90982 * 3 2 1 5 5 C 1.46900 * 111.00325 * 298.27601 * 4 3 2 6 6 C 1.50709 * 109.46860 * 293.23291 * 5 4 3 7 7 H 1.08001 * 119.99718 * 354.96522 * 6 5 4 8 8 C 1.37871 * 119.99818 * 174.96574 * 6 5 4 9 9 N 1.31517 * 120.00256 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99897 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46859 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47096 * 120.00237 * 10 8 6 13 13 H 1.48501 * 109.47347 * 240.00191 * 10 8 6 14 14 C 1.46904 * 111.00014 * 62.22849 * 4 3 2 15 15 C 1.50703 * 109.47172 * 66.04544 * 14 4 3 16 16 C 1.39793 * 126.07571 * 269.95849 * 15 14 4 17 17 C 1.37993 * 106.96899 * 179.77489 * 16 15 14 18 18 C 1.46496 * 126.26941 * 180.25347 * 17 16 15 19 19 O 1.21622 * 119.99551 * 0.19283 * 18 17 16 20 20 O 1.34893 * 120.00109 * 180.18713 * 18 17 16 21 21 C 1.45200 * 116.99922 * 180.02562 * 20 18 17 22 22 N 1.37704 * 107.46983 * 0.41558 * 17 16 15 23 23 C 1.46505 * 125.63490 * 179.84103 * 22 17 16 24 24 C 1.34958 * 108.72808 * 359.57372 * 22 17 16 25 25 H 1.08995 * 109.46873 * 59.99648 * 1 2 3 26 26 H 1.09001 * 109.46966 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46864 * 299.99975 * 1 2 3 28 28 H 1.09001 * 109.47017 * 240.00791 * 2 1 3 29 29 H 1.08995 * 109.47323 * 120.00064 * 2 1 3 30 30 H 1.08996 * 109.46934 * 59.91294 * 3 2 1 31 31 H 1.08994 * 109.47275 * 299.90983 * 3 2 1 32 32 H 1.09005 * 109.47313 * 53.22429 * 5 4 3 33 33 H 1.08995 * 109.47382 * 173.23025 * 5 4 3 34 34 H 0.97003 * 119.99595 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.46937 * 306.04230 * 14 4 3 36 36 H 1.08997 * 109.46992 * 186.04656 * 14 4 3 37 37 H 1.08004 * 126.51912 * 0.03382 * 16 15 14 38 38 H 1.09003 * 109.46597 * 60.00244 * 21 20 18 39 39 H 1.08999 * 109.47202 * 180.02562 * 21 20 18 40 40 H 1.09000 * 109.47092 * 300.00549 * 21 20 18 41 41 H 1.09006 * 109.46441 * 269.71755 * 23 22 17 42 42 H 1.09000 * 109.46874 * 149.71927 * 23 22 17 43 43 H 1.08994 * 109.46992 * 29.71482 * 23 22 17 44 44 H 1.08000 * 125.50520 * 180.28141 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4426 0.0022 5 6 4.0338 0.7936 1.2111 6 6 3.6887 1.6268 2.4185 7 1 3.2071 2.5853 2.2934 8 6 3.9879 1.1653 3.6828 9 7 4.5748 -0.0017 3.8351 10 14 3.5609 2.1984 5.1795 11 1 2.9116 3.4600 4.7411 12 1 2.6301 1.4412 6.0544 13 1 4.8010 2.5150 5.9326 14 6 4.0373 0.8029 -1.2102 15 6 3.6805 1.6363 -2.4141 16 6 2.5223 1.5126 -3.1869 17 6 2.5963 2.4686 -4.1794 18 6 1.5979 2.7134 -5.2231 19 8 0.5850 2.0415 -5.2651 20 8 1.8019 3.6841 -6.1373 21 6 0.7702 3.8710 -7.1417 22 7 3.7823 3.1478 -4.0114 23 6 4.2633 4.2466 -4.8527 24 6 4.4257 2.6381 -2.9401 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.6754 1.9568 0.8892 31 1 1.6780 1.9559 -0.8907 32 1 3.5895 -0.1965 1.3139 33 1 5.1167 0.6994 1.1320 34 1 4.7856 -0.3262 4.7246 35 1 3.6031 -0.1914 -1.3150 36 1 5.1214 0.7198 -1.1342 37 1 1.7197 0.8063 -3.0337 38 1 -0.1712 4.1220 -6.6531 39 1 1.0588 4.6800 -7.8128 40 1 0.6488 2.9509 -7.7134 41 1 4.8606 3.8433 -5.6705 42 1 4.8752 4.9214 -4.2542 43 1 3.4119 4.7923 -5.2594 44 1 5.3801 2.9745 -2.5630 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139373003.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:37 Heat of formation + Delta-G solvation = -53.322455 kcal Electronic energy + Delta-G solvation = -24068.771312 eV Core-core repulsion = 20600.565727 eV Total energy + Delta-G solvation = -3468.205585 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.53903 -40.94397 -38.94731 -37.53303 -34.88365 -34.25646 -33.19118 -31.19208 -29.58510 -28.44269 -27.88031 -26.82071 -25.16857 -23.98807 -23.63296 -21.50098 -20.95497 -20.41246 -18.45395 -18.11659 -18.01815 -17.54215 -16.84998 -16.61861 -16.38265 -15.93278 -15.91071 -15.15534 -14.96068 -14.80106 -14.30872 -14.30157 -14.17294 -13.72330 -13.59691 -13.26270 -13.17086 -13.05972 -12.82818 -12.74802 -12.54177 -12.46959 -12.34966 -12.20291 -12.17181 -11.87501 -11.85395 -11.69554 -11.25123 -11.18444 -10.54186 -9.61035 -9.22353 -8.74652 -8.12907 -6.21461 0.17916 1.42271 1.43151 1.55967 1.57676 1.64343 1.94254 2.07594 2.45180 3.19268 3.63776 3.72695 3.93565 4.13343 4.17589 4.23256 4.30366 4.33464 4.36835 4.45590 4.50491 4.55242 4.64966 4.69519 4.71919 4.82312 4.84343 4.97248 4.97504 5.08547 5.16791 5.21439 5.21891 5.30657 5.40211 5.49698 5.57896 5.72070 5.75128 5.98563 6.16944 6.27596 6.48254 6.66090 6.78205 6.96268 7.47577 8.97178 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022072 B = 0.003570 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.289168 B = 7841.778631 C = 8371.435840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.154 4.154 3 C 0.076 3.924 4 N -0.535 5.535 5 C 0.203 3.797 6 C -0.512 4.512 7 H 0.057 0.943 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.961 3.039 11 H -0.266 1.266 12 H -0.281 1.281 13 H -0.278 1.278 14 C 0.124 3.876 15 C -0.178 4.178 16 C -0.097 4.097 17 C -0.075 4.075 18 C 0.543 3.457 19 O -0.536 6.536 20 O -0.357 6.357 21 C 0.029 3.971 22 N -0.413 5.413 23 C 0.061 3.939 24 C 0.067 3.933 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.039 0.961 30 H 0.052 0.948 31 H 0.070 0.930 32 H -0.021 1.021 33 H 0.002 0.998 34 H 0.262 0.738 35 H 0.031 0.969 36 H 0.073 0.927 37 H 0.136 0.864 38 H 0.060 0.940 39 H 0.139 0.861 40 H 0.062 0.938 41 H 0.094 0.906 42 H 0.109 0.891 43 H 0.098 0.902 44 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.657 9.075 -21.867 23.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.193 4.193 3 C -0.052 4.052 4 N -0.258 5.258 5 C 0.077 3.923 6 C -0.551 4.551 7 H 0.075 0.925 8 C -0.194 4.194 9 N -0.575 5.575 10 Si 0.787 3.213 11 H -0.190 1.190 12 H -0.207 1.207 13 H -0.204 1.204 14 C -0.005 4.005 15 C -0.183 4.183 16 C -0.124 4.124 17 C -0.184 4.184 18 C 0.390 3.610 19 O -0.427 6.427 20 O -0.274 6.274 21 C -0.064 4.064 22 N -0.086 5.086 23 C -0.078 4.078 24 C -0.072 4.072 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.089 0.911 32 H -0.004 1.004 33 H 0.020 0.980 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.092 0.908 37 H 0.154 0.846 38 H 0.079 0.921 39 H 0.157 0.843 40 H 0.080 0.920 41 H 0.112 0.888 42 H 0.128 0.872 43 H 0.116 0.884 44 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -2.644 9.607 -22.076 24.221 hybrid contribution -0.565 -0.941 1.092 1.548 sum -3.210 8.666 -20.985 22.930 Atomic orbital electron populations 1.21603 0.94359 1.01762 1.01734 1.22036 0.97438 0.99284 1.00588 1.21913 0.87713 0.94947 1.00676 1.62274 1.07386 1.54490 1.01658 1.19438 0.93393 0.92235 0.87210 1.21457 1.38150 1.04258 0.91217 0.92481 1.25805 0.95371 0.96239 1.02035 1.70088 1.43570 1.20446 1.23404 0.85451 0.77919 0.78929 0.79024 1.18980 1.20744 1.20409 1.20347 0.99401 0.93739 0.86963 1.19263 0.96979 1.02543 0.99548 1.21239 0.98632 0.98463 0.94110 1.19225 0.91572 1.04660 1.02934 1.19830 0.83998 0.77437 0.79715 1.90875 1.28948 1.48905 1.73955 1.86585 1.49322 1.51517 1.39963 1.23595 0.89860 1.03848 0.89053 1.44046 1.14345 1.27126 1.23108 1.22571 1.02467 0.87548 0.95237 1.22139 1.00069 0.96111 0.88920 0.91970 0.92260 0.93205 0.92171 0.94271 0.92995 0.91145 1.00359 0.98010 0.92912 0.95114 0.90814 0.84615 0.92134 0.84331 0.91956 0.88801 0.87218 0.88362 0.78531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.34 9.91 71.98 0.71 -3.63 16 2 C -0.15 -5.91 5.28 30.60 0.16 -5.75 16 3 C 0.08 3.09 4.92 86.30 0.43 3.52 16 4 N -0.54 -23.32 4.69 -905.33 -4.24 -27.56 16 5 C 0.20 10.77 4.52 85.56 0.39 11.16 16 6 C -0.51 -29.17 8.40 25.60 0.21 -28.96 16 7 H 0.06 3.25 7.35 -2.91 -0.02 3.23 16 8 C 0.00 0.18 5.46 84.65 0.46 0.64 16 9 N -0.93 -56.37 13.29 21.45 0.28 -56.08 16 10 Si 0.96 44.85 29.54 68.60 2.03 46.88 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 14 C 0.12 4.49 5.24 85.56 0.45 4.94 16 15 C -0.18 -5.50 4.96 -20.13 -0.10 -5.60 16 16 C -0.10 -3.02 9.21 22.59 0.21 -2.81 16 17 C -0.07 -2.06 6.89 40.32 0.28 -1.79 16 18 C 0.54 14.59 7.92 69.97 0.55 15.14 16 19 O -0.54 -17.40 16.68 19.44 0.32 -17.08 16 20 O -0.36 -6.94 7.99 -58.08 -0.46 -7.40 16 21 C 0.03 0.38 10.57 113.37 1.20 1.58 16 22 N -0.41 -9.18 3.15 -534.84 -1.68 -10.86 16 23 C 0.06 0.77 10.57 127.77 1.35 2.12 16 24 C 0.07 1.65 11.26 83.57 0.94 2.59 16 25 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.06 2.18 6.33 -2.39 -0.02 2.17 16 29 H 0.04 1.77 6.29 -2.39 -0.02 1.75 16 30 H 0.05 2.34 6.97 -2.39 -0.02 2.33 16 31 H 0.07 2.67 6.19 -2.39 -0.01 2.65 16 32 H -0.02 -1.22 6.02 -2.38 -0.01 -1.23 16 33 H 0.00 0.10 7.92 -2.39 -0.02 0.08 16 34 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 35 H 0.03 1.15 6.07 -2.39 -0.01 1.13 16 36 H 0.07 2.61 7.92 -2.39 -0.02 2.59 16 37 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 38 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.10 1.23 6.13 -2.39 -0.01 1.21 16 44 H 0.20 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -71.45 358.49 4.47 -66.98 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.98 Total: 11.95 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 7.24 Total: -6.84 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -5.64 Total: -94.50 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.14 Total: -24.48 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -71.45 4.47 -66.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139373003.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.662 kcal (2) G-P(sol) polarization free energy of solvation -71.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds