Wall clock time and date at job start Tue Mar 31 2020 06:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47556 * 2 1 4 4 N 1.46898 * 109.47458 * 182.25329 * 3 2 1 5 5 C 1.46894 * 111.00447 * 199.82626 * 4 3 2 6 6 C 1.50703 * 109.46875 * 66.04740 * 5 4 3 7 7 H 1.07999 * 120.00325 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00091 * 180.02562 * 6 5 4 9 9 N 1.31525 * 119.99775 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00222 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47302 * 59.99848 * 10 8 6 12 12 H 1.48502 * 109.47327 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46904 * 300.00050 * 10 8 6 14 14 C 1.46906 * 110.99858 * 75.86983 * 4 3 2 15 15 C 1.50700 * 109.47275 * 199.53960 * 14 4 3 16 16 C 1.38574 * 120.38159 * 254.56595 * 15 14 4 17 17 C 1.38540 * 118.54734 * 179.97438 * 16 15 14 18 18 C 1.38791 * 119.23564 * 359.97438 * 17 16 15 19 19 O 1.35675 * 119.65212 * 180.02562 * 18 17 16 20 20 C 1.42898 * 117.00175 * 180.02562 * 19 18 17 21 21 N 1.32323 * 120.70260 * 0.02562 * 18 17 16 22 22 C 1.32350 * 121.57280 * 359.97438 * 21 18 17 23 23 O 1.35670 * 119.64857 * 179.97438 * 22 21 18 24 24 C 1.42906 * 117.00101 * 5.07420 * 23 22 21 25 25 H 1.08999 * 109.47316 * 304.91942 * 1 2 3 26 26 H 1.08999 * 109.47029 * 64.91642 * 1 2 3 27 27 H 1.08998 * 109.47920 * 184.91273 * 1 2 3 28 28 H 1.09002 * 109.47053 * 239.99609 * 2 1 3 29 29 H 1.09003 * 109.46299 * 120.00073 * 2 1 3 30 30 H 1.08998 * 109.47346 * 62.25034 * 3 2 1 31 31 H 1.09003 * 109.47217 * 302.25441 * 3 2 1 32 32 H 1.09000 * 109.47356 * 186.04479 * 5 4 3 33 33 H 1.08999 * 109.47456 * 306.04715 * 5 4 3 34 34 H 0.96997 * 119.99609 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.46713 * 79.54168 * 14 4 3 36 36 H 1.08994 * 109.47310 * 319.54528 * 14 4 3 37 37 H 1.07997 * 120.72964 * 359.95631 * 16 15 14 38 38 H 1.08000 * 120.38329 * 180.02562 * 17 16 15 39 39 H 1.08997 * 109.47716 * 299.99924 * 20 19 18 40 40 H 1.09004 * 109.47159 * 60.00142 * 20 19 18 41 41 H 1.09004 * 109.47234 * 179.97438 * 20 19 18 42 42 H 1.09003 * 109.46843 * 60.00327 * 24 23 22 43 43 H 1.09001 * 109.47060 * 180.02562 * 24 23 22 44 44 H 1.08997 * 109.47500 * 300.00665 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5080 1.4427 -0.0545 5 6 4.0518 2.7267 0.4077 6 6 3.7474 2.9028 1.8731 7 1 3.2047 2.1373 2.4078 8 6 4.1617 4.0412 2.5314 9 7 4.8231 4.9733 1.8804 10 14 3.7851 4.2592 4.3479 11 1 4.4070 3.1527 5.1187 12 1 4.3346 5.5573 4.8152 13 1 2.3146 4.2406 4.5542 14 6 3.9847 1.1255 -1.4073 15 6 5.4184 0.6660 -1.3399 16 6 6.4426 1.5023 -1.7546 17 6 7.7467 1.0413 -1.6756 18 6 7.9860 -0.2353 -1.1864 19 8 9.2598 -0.6950 -1.1049 20 6 9.4410 -2.0170 -0.5936 21 7 6.9849 -1.0088 -0.7986 22 6 5.7280 -0.5989 -0.8610 23 8 4.7318 -1.4247 -0.4534 24 6 5.1194 -2.6695 0.1317 25 1 -0.3634 0.5882 0.8426 26 1 -0.3633 0.4357 -0.9307 27 1 -0.3635 -1.0238 0.0880 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 1.7101 1.9445 0.9094 31 1 1.6441 1.9678 -0.8691 32 1 5.1312 2.7396 0.2568 33 1 3.5960 3.5391 -0.1582 34 1 5.1149 5.7740 2.3436 35 1 3.9173 2.0147 -2.0341 36 1 3.3689 0.3334 -1.8331 37 1 6.2289 2.4916 -2.1313 38 1 8.5677 1.6685 -1.9903 39 1 9.0445 -2.0721 0.4202 40 1 8.9132 -2.7280 -1.2293 41 1 10.5036 -2.2597 -0.5821 42 1 5.7250 -2.4813 1.0183 43 1 4.2290 -3.2321 0.4122 44 1 5.7001 -3.2448 -0.5894 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139920955.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:25 Heat of formation + Delta-G solvation = -38.355554 kcal Electronic energy + Delta-G solvation = -24640.303446 eV Core-core repulsion = 21172.746874 eV Total energy + Delta-G solvation = -3467.556572 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.63920 -38.66993 -37.28638 -36.50252 -33.14809 -32.70094 -31.62220 -30.43189 -27.77489 -27.33841 -26.66334 -25.43527 -23.91969 -22.70850 -21.88718 -21.04483 -19.72180 -18.60386 -17.62718 -16.38495 -16.10043 -15.75894 -15.43566 -15.27515 -14.79159 -14.52223 -14.42905 -14.03544 -13.67681 -13.31719 -13.13540 -13.04534 -12.79316 -12.38823 -11.99437 -11.87465 -11.68105 -11.61269 -11.43808 -11.33347 -11.05580 -10.85567 -10.69031 -10.67786 -10.40440 -10.23045 -9.93996 -9.73433 -9.59825 -9.32343 -9.12226 -8.38208 -7.70170 -7.12108 -5.98055 -3.98018 1.55890 1.61603 3.19737 3.35596 3.39552 3.42742 3.43705 4.06023 4.47084 4.52186 5.03158 5.23255 5.25679 5.31406 5.33695 5.37997 5.42677 5.48672 5.54171 5.56007 5.63032 5.65001 5.70057 5.79235 5.86803 5.96279 6.09956 6.18066 6.29801 6.37620 6.38971 6.53441 6.63430 6.70292 6.84622 6.95845 7.10096 7.38321 7.41857 7.67951 7.86987 8.04587 8.18172 8.31876 8.63307 9.09566 9.65435 11.12843 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011410 B = 0.005676 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.438828 B = 4931.760760 C = 6236.566768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.064 3.936 4 N -0.528 5.528 5 C 0.193 3.807 6 C -0.503 4.503 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.110 3.890 15 C -0.161 4.161 16 C -0.002 4.002 17 C -0.226 4.226 18 C 0.346 3.654 19 O -0.310 6.310 20 C 0.043 3.957 21 N -0.599 5.599 22 C 0.378 3.622 23 O -0.284 6.284 24 C 0.043 3.957 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.016 0.984 32 H 0.031 0.969 33 H -0.012 1.012 34 H 0.260 0.740 35 H 0.033 0.967 36 H 0.072 0.928 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.091 0.909 42 H 0.054 0.946 43 H 0.091 0.909 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.201 -13.176 -7.900 15.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.064 4.064 4 N -0.252 5.252 5 C 0.068 3.932 6 C -0.542 4.542 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.019 4.019 15 C -0.165 4.165 16 C -0.027 4.027 17 C -0.247 4.247 18 C 0.168 3.832 19 O -0.217 6.217 20 C -0.053 4.053 21 N -0.338 5.338 22 C 0.200 3.800 23 O -0.189 6.189 24 C -0.053 4.053 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.034 0.966 32 H 0.049 0.951 33 H 0.006 0.994 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.090 0.910 37 H 0.163 0.837 38 H 0.157 0.843 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.110 0.890 42 H 0.073 0.927 43 H 0.110 0.890 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.590 -14.045 -7.298 16.039 hybrid contribution -0.327 1.233 0.491 1.367 sum 2.264 -12.813 -6.806 14.684 Atomic orbital electron populations 1.21748 0.96949 1.00691 1.01321 1.21495 0.93810 0.97920 1.02054 1.22005 0.88311 0.95204 1.00900 1.62043 1.07181 1.36313 1.19631 1.19732 0.95350 0.82825 0.95264 1.21127 1.35450 1.03186 0.94424 0.92025 1.24963 0.95423 0.95958 0.98206 1.69946 1.38768 1.08869 1.36294 0.86616 0.78548 0.77154 0.85410 1.20326 1.21408 1.20291 1.20689 0.90402 0.98702 0.92105 1.19708 0.97923 0.92148 1.06703 1.21169 0.90422 0.98396 0.92759 1.20787 0.98180 0.95147 1.10620 1.19269 0.82989 0.89630 0.91278 1.86230 1.22238 1.33377 1.79841 1.22769 1.01705 0.81467 0.99327 1.66723 1.00252 1.38749 1.28085 1.19042 0.83738 0.88106 0.89106 1.86370 1.29580 1.29203 1.73751 1.22759 1.01280 0.83546 0.97735 0.92845 0.93455 0.93459 0.92700 0.91670 0.89762 0.96598 0.95097 0.99394 0.92992 0.94883 0.90965 0.83720 0.84340 0.92448 0.92699 0.89019 0.92712 0.89023 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 37.16 0.37 -1.64 16 2 C -0.11 -1.85 6.07 -26.74 -0.16 -2.01 16 3 C 0.06 1.24 4.79 -3.83 -0.02 1.22 16 4 N -0.53 -11.35 4.35 -237.53 -1.03 -12.39 16 5 C 0.19 5.01 4.55 -4.98 -0.02 4.99 16 6 C -0.50 -14.20 8.23 -34.44 -0.28 -14.48 16 7 H 0.06 1.74 7.31 -52.49 -0.38 1.35 16 8 C 0.06 1.59 5.46 -17.81 -0.10 1.49 16 9 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 10 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.11 2.02 4.56 -4.97 -0.02 2.00 16 15 C -0.16 -2.94 4.83 -104.31 -0.50 -3.44 16 16 C 0.00 -0.04 9.16 -39.35 -0.36 -0.40 16 17 C -0.23 -3.63 10.04 -39.27 -0.39 -4.02 16 18 C 0.35 5.75 7.48 -17.14 -0.13 5.62 16 19 O -0.31 -4.59 10.47 -18.73 -0.20 -4.79 16 20 C 0.04 0.48 10.38 101.05 1.05 1.53 16 21 N -0.60 -10.25 8.06 -13.40 -0.11 -10.36 16 22 C 0.38 6.81 7.46 -17.14 -0.13 6.68 16 23 O -0.28 -4.79 9.82 -18.71 -0.18 -4.97 16 24 C 0.04 0.55 10.40 101.05 1.05 1.60 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.86 6.71 -51.93 -0.35 0.51 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.08 1.83 6.58 -51.93 -0.34 1.48 16 31 H 0.02 0.30 8.00 -51.93 -0.42 -0.12 16 32 H 0.03 0.86 6.91 -51.93 -0.36 0.50 16 33 H -0.01 -0.32 8.12 -51.93 -0.42 -0.75 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.03 0.59 7.85 -51.93 -0.41 0.19 16 36 H 0.07 1.22 6.36 -51.93 -0.33 0.89 16 37 H 0.15 2.21 8.04 -52.49 -0.42 1.79 16 38 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 39 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 40 H 0.05 0.59 8.10 -51.93 -0.42 0.17 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.05 0.60 8.04 -51.93 -0.42 0.19 16 LS Contribution 363.66 15.07 5.48 5.48 Total: -1.00 -31.57 363.66 -7.18 -38.76 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -7.21 Total: -1.76 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 0.35 Total: -0.86 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -0.40 Total: -48.79 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -0.38 Total: -9.76 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.57 -7.18 -38.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139920955.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.401 kcal (2) G-P(sol) polarization free energy of solvation -31.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds