Wall clock time and date at job start Tue Mar 31 2020 06:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47556 * 2 1 4 4 N 1.46898 * 109.47458 * 182.25329 * 3 2 1 5 5 C 1.46894 * 111.00447 * 199.82626 * 4 3 2 6 6 C 1.50703 * 109.46875 * 66.04740 * 5 4 3 7 7 H 1.07999 * 120.00325 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00091 * 180.02562 * 6 5 4 9 9 N 1.31525 * 119.99775 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00222 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47302 * 59.99848 * 10 8 6 12 12 H 1.48502 * 109.47327 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46904 * 300.00050 * 10 8 6 14 14 C 1.46906 * 110.99858 * 75.86983 * 4 3 2 15 15 C 1.50700 * 109.47275 * 199.53960 * 14 4 3 16 16 C 1.38574 * 120.38159 * 254.56595 * 15 14 4 17 17 C 1.38540 * 118.54734 * 179.97438 * 16 15 14 18 18 C 1.38791 * 119.23564 * 359.97438 * 17 16 15 19 19 O 1.35675 * 119.65212 * 180.02562 * 18 17 16 20 20 C 1.42898 * 117.00175 * 180.02562 * 19 18 17 21 21 N 1.32323 * 120.70260 * 0.02562 * 18 17 16 22 22 C 1.32350 * 121.57280 * 359.97438 * 21 18 17 23 23 O 1.35670 * 119.64857 * 179.97438 * 22 21 18 24 24 C 1.42906 * 117.00101 * 5.07420 * 23 22 21 25 25 H 1.08999 * 109.47316 * 304.91942 * 1 2 3 26 26 H 1.08999 * 109.47029 * 64.91642 * 1 2 3 27 27 H 1.08998 * 109.47920 * 184.91273 * 1 2 3 28 28 H 1.09002 * 109.47053 * 239.99609 * 2 1 3 29 29 H 1.09003 * 109.46299 * 120.00073 * 2 1 3 30 30 H 1.08998 * 109.47346 * 62.25034 * 3 2 1 31 31 H 1.09003 * 109.47217 * 302.25441 * 3 2 1 32 32 H 1.09000 * 109.47356 * 186.04479 * 5 4 3 33 33 H 1.08999 * 109.47456 * 306.04715 * 5 4 3 34 34 H 0.96997 * 119.99609 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.46713 * 79.54168 * 14 4 3 36 36 H 1.08994 * 109.47310 * 319.54528 * 14 4 3 37 37 H 1.07997 * 120.72964 * 359.95631 * 16 15 14 38 38 H 1.08000 * 120.38329 * 180.02562 * 17 16 15 39 39 H 1.08997 * 109.47716 * 299.99924 * 20 19 18 40 40 H 1.09004 * 109.47159 * 60.00142 * 20 19 18 41 41 H 1.09004 * 109.47234 * 179.97438 * 20 19 18 42 42 H 1.09003 * 109.46843 * 60.00327 * 24 23 22 43 43 H 1.09001 * 109.47060 * 180.02562 * 24 23 22 44 44 H 1.08997 * 109.47500 * 300.00665 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5080 1.4427 -0.0545 5 6 4.0518 2.7267 0.4077 6 6 3.7474 2.9028 1.8731 7 1 3.2047 2.1373 2.4078 8 6 4.1617 4.0412 2.5314 9 7 4.8231 4.9733 1.8804 10 14 3.7851 4.2592 4.3479 11 1 4.4070 3.1527 5.1187 12 1 4.3346 5.5573 4.8152 13 1 2.3146 4.2406 4.5542 14 6 3.9847 1.1255 -1.4073 15 6 5.4184 0.6660 -1.3399 16 6 6.4426 1.5023 -1.7546 17 6 7.7467 1.0413 -1.6756 18 6 7.9860 -0.2353 -1.1864 19 8 9.2598 -0.6950 -1.1049 20 6 9.4410 -2.0170 -0.5936 21 7 6.9849 -1.0088 -0.7986 22 6 5.7280 -0.5989 -0.8610 23 8 4.7318 -1.4247 -0.4534 24 6 5.1194 -2.6695 0.1317 25 1 -0.3634 0.5882 0.8426 26 1 -0.3633 0.4357 -0.9307 27 1 -0.3635 -1.0238 0.0880 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 1.7101 1.9445 0.9094 31 1 1.6441 1.9678 -0.8691 32 1 5.1312 2.7396 0.2568 33 1 3.5960 3.5391 -0.1582 34 1 5.1149 5.7740 2.3436 35 1 3.9173 2.0147 -2.0341 36 1 3.3689 0.3334 -1.8331 37 1 6.2289 2.4916 -2.1313 38 1 8.5677 1.6685 -1.9903 39 1 9.0445 -2.0721 0.4202 40 1 8.9132 -2.7280 -1.2293 41 1 10.5036 -2.2597 -0.5821 42 1 5.7250 -2.4813 1.0183 43 1 4.2290 -3.2321 0.4122 44 1 5.7001 -3.2448 -0.5894 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139920955.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:24 Heat of formation + Delta-G solvation = -61.009199 kcal Electronic energy + Delta-G solvation = -24641.285781 eV Core-core repulsion = 21172.746874 eV Total energy + Delta-G solvation = -3468.538908 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.91094 -39.87333 -38.78993 -37.84390 -34.91276 -34.32171 -33.05444 -31.81200 -29.28289 -28.67732 -27.95982 -26.71952 -25.65857 -24.00260 -23.40277 -22.51208 -21.30903 -19.82373 -18.85983 -18.48883 -17.32412 -17.10720 -16.88016 -16.46932 -16.41052 -15.99266 -15.87912 -15.34153 -15.20992 -14.65538 -14.51711 -14.39497 -14.09230 -13.91067 -13.64907 -13.37903 -12.96957 -12.83285 -12.75652 -12.66176 -12.58728 -12.43110 -12.37133 -12.23885 -11.91711 -11.59405 -11.54134 -11.35112 -11.17349 -10.88170 -10.66417 -10.55773 -9.01851 -8.86372 -8.16961 -6.25043 0.23107 0.30864 1.39280 1.42018 1.49653 2.03296 2.26865 2.40962 2.73496 3.15333 3.30520 3.47699 3.92616 4.01094 4.21549 4.26315 4.34218 4.40780 4.41929 4.45491 4.47764 4.49649 4.57959 4.66114 4.69940 4.74255 4.78037 4.83318 4.94064 5.02554 5.05899 5.25492 5.27108 5.32115 5.35071 5.41633 5.51486 5.60817 5.69846 5.91370 6.12890 6.43977 6.48105 6.71530 6.77143 6.91666 7.43466 8.93440 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011410 B = 0.005676 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.438828 B = 4931.760760 C = 6236.566768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.102 4.102 3 C 0.064 3.936 4 N -0.533 5.533 5 C 0.212 3.788 6 C -0.518 4.518 7 H 0.057 0.943 8 C 0.004 3.996 9 N -0.931 5.931 10 Si 0.961 3.039 11 H -0.274 1.274 12 H -0.282 1.282 13 H -0.266 1.266 14 C 0.115 3.885 15 C -0.186 4.186 16 C -0.008 4.008 17 C -0.231 4.231 18 C 0.339 3.661 19 O -0.315 6.315 20 C 0.037 3.963 21 N -0.600 5.600 22 C 0.368 3.632 23 O -0.297 6.297 24 C 0.039 3.961 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.021 0.979 32 H 0.007 0.993 33 H -0.040 1.040 34 H 0.263 0.737 35 H 0.033 0.967 36 H 0.089 0.911 37 H 0.153 0.847 38 H 0.160 0.840 39 H 0.049 0.951 40 H 0.059 0.941 41 H 0.126 0.874 42 H 0.044 0.956 43 H 0.119 0.881 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.991 -14.660 -7.646 16.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.140 4.140 3 C -0.064 4.064 4 N -0.257 5.257 5 C 0.086 3.914 6 C -0.557 4.557 7 H 0.075 0.925 8 C -0.194 4.194 9 N -0.572 5.572 10 Si 0.786 3.214 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.191 1.191 14 C -0.013 4.013 15 C -0.190 4.190 16 C -0.033 4.033 17 C -0.251 4.251 18 C 0.161 3.839 19 O -0.222 6.222 20 C -0.057 4.057 21 N -0.340 5.340 22 C 0.190 3.810 23 O -0.203 6.203 24 C -0.056 4.056 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.040 0.960 32 H 0.025 0.975 33 H -0.022 1.022 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.107 0.893 37 H 0.170 0.830 38 H 0.177 0.823 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.144 0.856 42 H 0.062 0.938 43 H 0.137 0.863 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.371 -15.559 -7.051 17.246 hybrid contribution -0.193 1.614 0.377 1.668 sum 2.178 -13.945 -6.675 15.613 Atomic orbital electron populations 1.21704 0.94592 1.02167 1.01671 1.21375 0.95725 0.95083 1.01849 1.22040 0.87128 0.97508 0.99712 1.61997 1.08414 1.33393 1.21907 1.19331 0.93761 0.84118 0.94170 1.21418 1.35355 1.03253 0.95640 0.92487 1.25810 0.95150 0.95609 1.02808 1.70067 1.39655 1.09356 1.38126 0.85572 0.78869 0.77206 0.79794 1.19933 1.20773 1.19126 1.20683 0.91128 0.99139 0.90334 1.19806 0.97937 0.92932 1.08308 1.21365 0.90757 0.98647 0.92562 1.21048 0.98437 0.95430 1.10210 1.19550 0.83618 0.89898 0.90826 1.86234 1.21038 1.35118 1.79781 1.23049 1.03996 0.79924 0.98750 1.66758 1.00063 1.38874 1.28263 1.19175 0.84261 0.88341 0.89206 1.86340 1.29709 1.30384 1.73831 1.22990 1.02767 0.82419 0.97380 0.93391 0.92436 0.91228 0.91793 0.92870 0.92522 0.96029 0.97475 1.02205 0.92841 0.94833 0.89260 0.82952 0.82269 0.93201 0.92211 0.85614 0.93755 0.86256 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.91 71.98 0.71 -2.85 16 2 C -0.10 -3.18 6.07 30.59 0.19 -2.99 16 3 C 0.06 2.50 4.79 86.30 0.41 2.91 16 4 N -0.53 -23.34 4.35 -905.39 -3.93 -27.27 16 5 C 0.21 11.40 4.55 85.56 0.39 11.79 16 6 C -0.52 -29.89 8.23 25.60 0.21 -29.67 16 7 H 0.06 3.27 7.31 -2.91 -0.02 3.25 16 8 C 0.00 0.24 5.46 84.65 0.46 0.70 16 9 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 10 Si 0.96 45.21 29.54 68.60 2.03 47.24 16 11 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 13 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 14 C 0.12 4.27 4.56 85.56 0.39 4.66 16 15 C -0.19 -6.85 4.83 -19.66 -0.09 -6.94 16 16 C -0.01 -0.28 9.16 22.42 0.21 -0.07 16 17 C -0.23 -7.31 10.04 22.47 0.23 -7.09 16 18 C 0.34 11.06 7.48 84.75 0.63 11.70 16 19 O -0.31 -8.92 10.47 -89.93 -0.94 -9.86 16 20 C 0.04 0.77 10.38 113.37 1.18 1.95 16 21 N -0.60 -20.23 8.06 -421.97 -3.40 -23.63 16 22 C 0.37 13.20 7.46 84.74 0.63 13.83 16 23 O -0.30 -9.79 9.82 -89.87 -0.88 -10.67 16 24 C 0.04 0.97 10.40 113.37 1.18 2.15 16 25 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 1.87 6.71 -2.39 -0.02 1.86 16 29 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.06 2.51 6.58 -2.39 -0.02 2.49 16 31 H 0.02 0.81 8.00 -2.39 -0.02 0.79 16 32 H 0.01 0.41 6.91 -2.39 -0.02 0.40 16 33 H -0.04 -2.30 8.12 -2.39 -0.02 -2.32 16 34 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 35 H 0.03 1.23 7.85 -2.39 -0.02 1.21 16 36 H 0.09 2.96 6.36 -2.39 -0.02 2.94 16 37 H 0.15 4.77 8.04 -2.91 -0.02 4.75 16 38 H 0.16 4.23 8.06 -2.91 -0.02 4.21 16 39 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 40 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 41 H 0.13 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.06 1.38 8.04 -2.39 -0.02 1.36 16 Total: -1.00 -68.42 363.66 0.84 -67.58 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.97 Total: 12.74 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 6.72 Total: 0.08 kcal Atomic # 7 Polarization: -100.04 SS G_CDS: -7.05 Total: -107.10 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -1.82 Total: -20.54 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -68.42 0.84 -67.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139920955.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.566 kcal (2) G-P(sol) polarization free energy of solvation -68.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds