Wall clock time and date at job start Tue Mar 31 2020 06:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47110 * 2 1 4 4 N 1.46901 * 109.47114 * 181.83169 * 3 2 1 5 5 C 1.46889 * 111.00638 * 57.47354 * 4 3 2 6 6 C 1.50705 * 109.47218 * 62.07067 * 5 4 3 7 7 H 1.08003 * 119.99234 * 5.13226 * 6 5 4 8 8 C 1.37870 * 120.00305 * 185.13430 * 6 5 4 9 9 N 1.31509 * 120.00105 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99921 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47282 * 89.99895 * 10 8 6 12 12 H 1.48503 * 109.47240 * 209.99643 * 10 8 6 13 13 H 1.48498 * 109.47097 * 329.99661 * 10 8 6 14 14 C 1.46905 * 110.99539 * 293.52069 * 4 3 2 15 15 C 1.50705 * 109.47136 * 286.55481 * 14 4 3 16 16 N 1.36429 * 125.45821 * 266.54518 * 15 14 4 17 17 H 0.97002 * 124.80951 * 0.02562 * 16 15 14 18 18 C 1.34627 * 110.37922 * 180.16096 * 16 15 14 19 19 C 1.50704 * 125.89466 * 179.88629 * 18 16 15 20 20 C 1.37836 * 108.20837 * 359.61517 * 18 16 15 21 21 C 1.47113 * 127.02623 * 180.21097 * 20 18 16 22 22 O 1.21543 * 120.00063 * 90.02182 * 21 20 18 23 23 O 1.34784 * 119.99777 * 270.02617 * 21 20 18 24 24 C 1.34428 * 125.45683 * 86.27943 * 15 14 4 25 25 C 1.50701 * 126.81241 * 0.02562 * 24 15 14 26 26 H 1.08999 * 109.47317 * 305.02815 * 1 2 3 27 27 H 1.09004 * 109.46937 * 65.02898 * 1 2 3 28 28 H 1.09000 * 109.47060 * 185.02221 * 1 2 3 29 29 H 1.08999 * 109.47652 * 239.99648 * 2 1 3 30 30 H 1.08997 * 109.47360 * 119.99606 * 2 1 3 31 31 H 1.08999 * 109.47629 * 61.82620 * 3 2 1 32 32 H 1.09001 * 109.46894 * 301.82287 * 3 2 1 33 33 H 1.09000 * 109.47424 * 182.07214 * 5 4 3 34 34 H 1.09003 * 109.47044 * 302.07243 * 5 4 3 35 35 H 0.97002 * 120.00188 * 180.02562 * 9 8 6 36 36 H 1.08996 * 109.46958 * 166.55888 * 14 4 3 37 37 H 1.08999 * 109.46901 * 46.55416 * 14 4 3 38 38 H 1.08998 * 109.46851 * 269.68561 * 19 18 16 39 39 H 1.09001 * 109.47224 * 149.68177 * 19 18 16 40 40 H 1.09006 * 109.46810 * 29.68325 * 19 18 16 41 41 H 0.96696 * 117.00132 * 179.97438 * 23 21 20 42 42 H 1.09003 * 109.47075 * 270.57129 * 25 24 15 43 43 H 1.09000 * 109.47449 * 30.57328 * 25 24 15 44 44 H 1.09004 * 109.47210 * 150.57634 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5083 1.4427 -0.0443 5 6 3.9997 0.7179 -1.2236 6 6 3.5205 1.4093 -2.4740 7 1 2.9825 2.3431 -2.4022 8 6 3.7687 0.8499 -3.7094 9 7 4.4241 -0.2869 -3.7968 10 14 3.1753 1.7074 -5.2592 11 1 4.2272 2.6363 -5.7447 12 1 2.8880 0.6944 -6.3064 13 1 1.9390 2.4731 -4.9588 14 6 4.0722 0.8821 1.1910 15 6 3.9078 1.8740 2.3136 16 7 4.8369 2.7965 2.6970 17 1 5.7068 2.9112 2.2834 18 6 4.3765 3.5231 3.7326 19 6 5.1173 4.6343 4.4310 20 6 3.1082 3.0794 4.0400 21 6 2.2240 3.5888 5.0997 22 8 1.4510 4.4962 4.8622 23 8 2.2713 3.0493 6.3339 24 6 2.8203 1.9948 3.0944 25 6 1.5563 1.1780 3.0150 26 1 -0.3634 0.5898 0.8415 27 1 -0.3633 0.4339 -0.9316 28 1 -0.3633 -1.0237 0.0900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.7037 1.9469 0.9059 32 1 1.6501 1.9656 -0.8732 33 1 5.0895 0.7018 -1.2122 34 1 3.6210 -0.3041 -1.2057 35 1 4.5991 -0.6803 -4.6660 36 1 5.1316 0.6720 1.0440 37 1 3.5501 -0.0411 1.4424 38 1 5.6937 4.2222 5.2592 39 1 4.4027 5.3635 4.8128 40 1 5.7913 5.1209 3.7258 41 1 1.6716 3.4174 6.9972 42 1 0.8575 1.6558 2.3283 43 1 1.7927 0.1768 2.6545 44 1 1.1044 1.1105 4.0046 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140496199.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:30 Heat of formation + Delta-G solvation = -55.374394 kcal Electronic energy + Delta-G solvation = -24502.965380 eV Core-core repulsion = 21034.670816 eV Total energy + Delta-G solvation = -3468.294564 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.31088 -39.61637 -37.47914 -35.94008 -33.14988 -32.61051 -32.30911 -31.29121 -28.55992 -27.68171 -26.51130 -25.01222 -24.00614 -22.58053 -22.10802 -19.82423 -19.62011 -18.73933 -17.86641 -16.83700 -16.20816 -15.88700 -15.37056 -15.14092 -14.96913 -14.52177 -14.32388 -13.68328 -13.46040 -13.25687 -13.11433 -12.92085 -12.86850 -12.56383 -12.29675 -12.15814 -12.01938 -11.61352 -11.55798 -11.34540 -11.19301 -10.98856 -10.90884 -10.74791 -10.68630 -10.55386 -10.41588 -9.92275 -9.59770 -9.22693 -8.49307 -8.46309 -7.80510 -7.18235 -6.05473 -4.06229 2.12180 2.19543 2.64012 3.12883 3.30381 3.36843 3.40903 3.55402 4.41568 4.71074 4.99907 5.06285 5.22764 5.30878 5.32200 5.38894 5.45934 5.49665 5.58773 5.65042 5.69334 5.77753 5.82684 5.92925 6.07522 6.09332 6.11969 6.25226 6.31119 6.43997 6.48239 6.49318 6.59591 6.79565 6.91562 7.07313 7.16975 7.29856 7.41073 7.61340 7.78179 7.96248 8.04267 8.17164 8.51985 9.02040 9.58336 11.05170 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020319 B = 0.004051 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.681978 B = 6910.007502 C = 7489.851813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.164 4.164 3 C 0.058 3.942 4 N -0.531 5.531 5 C 0.189 3.811 6 C -0.504 4.504 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.110 3.890 15 C 0.056 3.944 16 N -0.531 5.531 17 H 0.418 0.582 18 C 0.077 3.923 19 C -0.091 4.091 20 C -0.216 4.216 21 C 0.570 3.430 22 O -0.513 6.513 23 O -0.513 6.513 24 C -0.123 4.123 25 C -0.085 4.085 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.023 0.977 34 H 0.005 0.995 35 H 0.261 0.739 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.404 0.596 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.013 3.642 17.706 18.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.202 4.202 3 C -0.070 4.070 4 N -0.254 5.254 5 C 0.064 3.936 6 C -0.542 4.542 7 H 0.081 0.919 8 C -0.144 4.144 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.019 4.019 15 C -0.055 4.055 16 N -0.125 5.125 17 H 0.255 0.745 18 C -0.040 4.040 19 C -0.148 4.148 20 C -0.225 4.225 21 C 0.413 3.587 22 O -0.400 6.400 23 O -0.324 6.324 24 C -0.129 4.129 25 C -0.142 4.142 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.041 0.959 34 H 0.023 0.977 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.262 0.738 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.592 4.084 17.064 17.556 hybrid contribution -0.490 -0.123 -0.678 0.846 sum -1.082 3.960 16.385 16.892 Atomic orbital electron populations 1.21673 0.96533 1.00560 1.01369 1.22207 0.95580 1.00301 1.02141 1.22279 0.87961 0.94763 1.02043 1.62357 1.07024 1.54852 1.01194 1.19815 0.95221 0.92516 0.86062 1.21119 1.35690 1.07432 0.89991 0.91948 1.24947 0.95425 0.94957 0.99098 1.69948 1.41105 1.18243 1.24573 0.86546 0.79197 0.79184 0.82797 1.20723 1.21348 1.19835 1.20578 1.00607 0.92404 0.88291 1.20079 0.89689 0.96168 0.99559 1.41311 1.16841 1.27726 1.26663 0.74464 1.20126 0.93417 0.97564 0.92943 1.20421 0.99986 0.94569 0.99837 1.19090 0.95659 1.06430 1.01331 1.20135 0.79804 0.78160 0.80621 1.90892 1.37992 1.28906 1.82251 1.84756 1.62871 1.62959 1.21832 1.19980 0.96471 0.98662 0.97760 1.20425 0.93682 0.98718 1.01346 0.93385 0.92781 0.93666 0.90251 0.93099 0.91533 0.90417 0.95911 0.97741 0.92971 0.90856 0.92579 0.90405 0.90328 0.90838 0.73848 0.90887 0.91187 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.16 -2.86 4.77 -26.73 -0.13 -2.99 16 3 C 0.06 1.10 4.58 -3.82 -0.02 1.08 16 4 N -0.53 -10.79 4.67 -237.52 -1.11 -11.90 16 5 C 0.19 4.61 4.32 -4.98 -0.02 4.59 16 6 C -0.50 -13.62 8.41 -34.44 -0.29 -13.91 16 7 H 0.06 1.71 7.02 -52.48 -0.37 1.34 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -25.93 13.29 55.43 0.74 -25.19 16 10 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 14 C 0.11 1.85 5.18 -4.97 -0.03 1.83 16 15 C 0.06 0.87 6.32 -81.89 -0.52 0.35 16 16 N -0.53 -7.06 5.89 -5.20 -0.03 -7.10 16 17 H 0.42 4.56 8.96 -40.82 -0.37 4.20 16 18 C 0.08 1.01 7.22 -81.51 -0.59 0.42 16 19 C -0.09 -0.84 10.25 36.01 0.37 -0.47 16 20 C -0.22 -3.25 6.21 -103.01 -0.64 -3.89 16 21 C 0.57 8.11 7.78 34.33 0.27 8.38 16 22 O -0.51 -8.63 17.90 -19.30 -0.35 -8.97 16 23 O -0.51 -5.51 13.44 -40.72 -0.55 -6.06 16 24 C -0.12 -1.91 5.65 -102.53 -0.58 -2.49 16 25 C -0.08 -1.19 8.42 36.01 0.30 -0.88 16 26 H 0.05 0.64 7.39 -51.93 -0.38 0.26 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.66 6.22 -51.93 -0.32 1.34 16 30 H 0.05 0.82 4.74 -51.93 -0.25 0.57 16 31 H 0.07 1.19 3.80 -51.93 -0.20 0.99 16 32 H 0.08 1.66 6.78 -51.93 -0.35 1.31 16 33 H 0.02 0.60 7.94 -51.93 -0.41 0.18 16 34 H 0.00 0.13 6.10 -51.93 -0.32 -0.19 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.07 1.19 7.84 -51.93 -0.41 0.78 16 37 H 0.06 0.92 5.28 -51.93 -0.27 0.65 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.75 7.96 -51.93 -0.41 0.33 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.40 2.30 9.11 45.56 0.42 2.72 16 42 H 0.07 1.06 5.66 -51.93 -0.29 0.76 16 43 H 0.07 0.94 5.47 -51.93 -0.28 0.65 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 349.81 15.07 5.27 5.27 Total: -1.00 -32.61 349.81 -8.11 -40.73 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.47 Total: 5.15 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -1.60 Total: -8.29 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -0.40 Total: -44.18 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.89 Total: -15.03 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.61 -8.11 -40.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140496199.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.646 kcal (2) G-P(sol) polarization free energy of solvation -32.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds