Wall clock time and date at job start Tue Mar 31 2020 06:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47110 * 2 1 4 4 N 1.46901 * 109.47114 * 181.83169 * 3 2 1 5 5 C 1.46889 * 111.00638 * 57.47354 * 4 3 2 6 6 C 1.50705 * 109.47218 * 62.07067 * 5 4 3 7 7 H 1.08003 * 119.99234 * 5.13226 * 6 5 4 8 8 C 1.37870 * 120.00305 * 185.13430 * 6 5 4 9 9 N 1.31509 * 120.00105 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99921 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47282 * 89.99895 * 10 8 6 12 12 H 1.48503 * 109.47240 * 209.99643 * 10 8 6 13 13 H 1.48498 * 109.47097 * 329.99661 * 10 8 6 14 14 C 1.46905 * 110.99539 * 293.52069 * 4 3 2 15 15 C 1.50705 * 109.47136 * 286.55481 * 14 4 3 16 16 N 1.36429 * 125.45821 * 266.54518 * 15 14 4 17 17 H 0.97002 * 124.80951 * 0.02562 * 16 15 14 18 18 C 1.34627 * 110.37922 * 180.16096 * 16 15 14 19 19 C 1.50704 * 125.89466 * 179.88629 * 18 16 15 20 20 C 1.37836 * 108.20837 * 359.61517 * 18 16 15 21 21 C 1.47113 * 127.02623 * 180.21097 * 20 18 16 22 22 O 1.21543 * 120.00063 * 90.02182 * 21 20 18 23 23 O 1.34784 * 119.99777 * 270.02617 * 21 20 18 24 24 C 1.34428 * 125.45683 * 86.27943 * 15 14 4 25 25 C 1.50701 * 126.81241 * 0.02562 * 24 15 14 26 26 H 1.08999 * 109.47317 * 305.02815 * 1 2 3 27 27 H 1.09004 * 109.46937 * 65.02898 * 1 2 3 28 28 H 1.09000 * 109.47060 * 185.02221 * 1 2 3 29 29 H 1.08999 * 109.47652 * 239.99648 * 2 1 3 30 30 H 1.08997 * 109.47360 * 119.99606 * 2 1 3 31 31 H 1.08999 * 109.47629 * 61.82620 * 3 2 1 32 32 H 1.09001 * 109.46894 * 301.82287 * 3 2 1 33 33 H 1.09000 * 109.47424 * 182.07214 * 5 4 3 34 34 H 1.09003 * 109.47044 * 302.07243 * 5 4 3 35 35 H 0.97002 * 120.00188 * 180.02562 * 9 8 6 36 36 H 1.08996 * 109.46958 * 166.55888 * 14 4 3 37 37 H 1.08999 * 109.46901 * 46.55416 * 14 4 3 38 38 H 1.08998 * 109.46851 * 269.68561 * 19 18 16 39 39 H 1.09001 * 109.47224 * 149.68177 * 19 18 16 40 40 H 1.09006 * 109.46810 * 29.68325 * 19 18 16 41 41 H 0.96696 * 117.00132 * 179.97438 * 23 21 20 42 42 H 1.09003 * 109.47075 * 270.57129 * 25 24 15 43 43 H 1.09000 * 109.47449 * 30.57328 * 25 24 15 44 44 H 1.09004 * 109.47210 * 150.57634 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5083 1.4427 -0.0443 5 6 3.9997 0.7179 -1.2236 6 6 3.5205 1.4093 -2.4740 7 1 2.9825 2.3431 -2.4022 8 6 3.7687 0.8499 -3.7094 9 7 4.4241 -0.2869 -3.7968 10 14 3.1753 1.7074 -5.2592 11 1 4.2272 2.6363 -5.7447 12 1 2.8880 0.6944 -6.3064 13 1 1.9390 2.4731 -4.9588 14 6 4.0722 0.8821 1.1910 15 6 3.9078 1.8740 2.3136 16 7 4.8369 2.7965 2.6970 17 1 5.7068 2.9112 2.2834 18 6 4.3765 3.5231 3.7326 19 6 5.1173 4.6343 4.4310 20 6 3.1082 3.0794 4.0400 21 6 2.2240 3.5888 5.0997 22 8 1.4510 4.4962 4.8622 23 8 2.2713 3.0493 6.3339 24 6 2.8203 1.9948 3.0944 25 6 1.5563 1.1780 3.0150 26 1 -0.3634 0.5898 0.8415 27 1 -0.3633 0.4339 -0.9316 28 1 -0.3633 -1.0237 0.0900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.7037 1.9469 0.9059 32 1 1.6501 1.9656 -0.8732 33 1 5.0895 0.7018 -1.2122 34 1 3.6210 -0.3041 -1.2057 35 1 4.5991 -0.6803 -4.6660 36 1 5.1316 0.6720 1.0440 37 1 3.5501 -0.0411 1.4424 38 1 5.6937 4.2222 5.2592 39 1 4.4027 5.3635 4.8128 40 1 5.7913 5.1209 3.7258 41 1 1.6716 3.4174 6.9972 42 1 0.8575 1.6558 2.3283 43 1 1.7927 0.1768 2.6545 44 1 1.1044 1.1105 4.0046 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140496199.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:29 Heat of formation + Delta-G solvation = -77.864757 kcal Electronic energy + Delta-G solvation = -24503.940635 eV Core-core repulsion = 21034.670816 eV Total energy + Delta-G solvation = -3469.269819 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.40757 -40.67294 -39.03579 -36.94032 -34.94674 -33.86402 -33.76334 -32.47248 -29.91655 -28.93487 -28.09937 -26.37565 -25.40832 -23.92797 -23.59271 -21.16124 -20.83386 -19.92339 -18.89954 -18.41712 -17.83246 -17.02564 -16.81963 -16.59099 -16.25451 -16.03900 -15.62756 -15.07452 -14.90711 -14.34327 -14.21992 -14.18992 -14.00974 -13.89350 -13.51687 -13.25356 -13.23374 -13.11925 -12.86946 -12.66152 -12.60349 -12.54974 -12.50303 -12.29463 -12.19887 -11.99397 -11.78131 -11.68491 -11.28237 -11.08926 -10.57895 -9.59336 -9.00049 -8.79398 -8.17530 -6.25530 1.09122 1.12940 1.40345 1.40704 1.46294 1.52157 2.13040 2.41247 2.56499 3.15702 3.50633 3.78089 3.97595 4.12290 4.16750 4.24553 4.31609 4.36767 4.46715 4.54944 4.59176 4.67416 4.72045 4.76104 4.83840 4.94784 4.99815 5.02116 5.09921 5.10512 5.16528 5.24637 5.28109 5.39022 5.50433 5.58210 5.59783 5.70990 5.83594 6.03948 6.09667 6.38060 6.60274 6.69639 6.91065 7.06718 7.43577 8.92519 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020319 B = 0.004051 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.681978 B = 6910.007502 C = 7489.851813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.153 4.153 3 C 0.064 3.936 4 N -0.539 5.539 5 C 0.206 3.794 6 C -0.515 4.515 7 H 0.054 0.946 8 C 0.009 3.991 9 N -0.931 5.931 10 Si 0.957 3.043 11 H -0.275 1.275 12 H -0.283 1.283 13 H -0.269 1.269 14 C 0.116 3.884 15 C 0.036 3.964 16 N -0.528 5.528 17 H 0.428 0.572 18 C 0.092 3.908 19 C -0.090 4.090 20 C -0.252 4.252 21 C 0.581 3.419 22 O -0.546 6.546 23 O -0.504 6.504 24 C -0.130 4.130 25 C -0.084 4.084 26 H 0.067 0.933 27 H 0.043 0.957 28 H 0.061 0.939 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.001 0.999 34 H -0.015 1.015 35 H 0.263 0.737 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.427 0.573 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.250 4.489 19.169 19.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.192 4.192 3 C -0.064 4.064 4 N -0.262 5.262 5 C 0.080 3.920 6 C -0.553 4.553 7 H 0.073 0.927 8 C -0.190 4.190 9 N -0.572 5.572 10 Si 0.783 3.217 11 H -0.201 1.201 12 H -0.208 1.208 13 H -0.193 1.193 14 C -0.012 4.012 15 C -0.075 4.075 16 N -0.123 5.123 17 H 0.267 0.733 18 C -0.027 4.027 19 C -0.147 4.147 20 C -0.260 4.260 21 C 0.424 3.576 22 O -0.437 6.437 23 O -0.317 6.317 24 C -0.137 4.137 25 C -0.141 4.141 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.019 0.981 34 H 0.003 0.997 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.288 0.712 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.826 4.927 18.563 19.224 hybrid contribution -0.382 -0.376 -0.990 1.125 sum -1.208 4.552 17.573 18.193 Atomic orbital electron populations 1.21640 0.94316 1.01978 1.01720 1.22062 0.97501 0.98762 1.00894 1.22212 0.87158 0.95626 1.01399 1.62230 1.07959 1.54620 1.01373 1.19437 0.93595 0.91673 0.87323 1.21377 1.35387 1.07212 0.91344 0.92730 1.25722 0.95532 0.95568 1.02143 1.70055 1.42218 1.19548 1.25348 0.85563 0.78846 0.78231 0.79081 1.20083 1.20830 1.19346 1.20492 1.00463 0.93092 0.87154 1.19777 0.90784 0.97184 0.99733 1.41335 1.17028 1.27225 1.26664 0.73276 1.20734 0.93006 0.97083 0.91833 1.20571 1.00109 0.93376 1.00638 1.19364 0.96922 1.07222 1.02505 1.19957 0.78918 0.77427 0.81256 1.90879 1.39338 1.30461 1.82993 1.84695 1.63346 1.62427 1.21213 1.20253 0.96738 0.98929 0.97761 1.20427 0.93124 0.98580 1.01923 0.91414 0.93755 0.92016 0.94162 0.91548 0.89856 0.93254 0.98124 0.99704 0.92838 0.90711 0.92105 0.88132 0.90397 0.89048 0.71188 0.91431 0.90829 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 9.91 71.98 0.71 -3.30 16 2 C -0.15 -5.40 4.77 30.59 0.15 -5.25 16 3 C 0.06 2.46 4.58 86.30 0.40 2.85 16 4 N -0.54 -22.30 4.67 -905.36 -4.23 -26.52 16 5 C 0.21 10.42 4.32 85.56 0.37 10.79 16 6 C -0.51 -28.56 8.41 25.60 0.22 -28.35 16 7 H 0.05 3.06 7.02 -2.91 -0.02 3.04 16 8 C 0.01 0.48 5.46 84.65 0.46 0.94 16 9 N -0.93 -54.77 13.29 21.44 0.28 -54.49 16 10 Si 0.96 44.24 29.54 68.60 2.03 46.26 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 14 C 0.12 3.92 5.18 85.56 0.44 4.36 16 15 C 0.04 1.09 6.32 40.97 0.26 1.35 16 16 N -0.53 -13.26 5.89 -170.37 -1.00 -14.26 16 17 H 0.43 8.72 8.96 -92.71 -0.83 7.89 16 18 C 0.09 2.22 7.22 42.04 0.30 2.52 16 19 C -0.09 -1.40 10.25 71.24 0.73 -0.67 16 20 C -0.25 -7.16 6.21 -18.82 -0.12 -7.28 16 21 C 0.58 15.48 7.78 70.15 0.55 16.03 16 22 O -0.55 -17.71 17.90 19.69 0.35 -17.36 16 23 O -0.50 -9.55 13.44 -56.95 -0.77 -10.31 16 24 C -0.13 -3.89 5.65 -18.51 -0.10 -4.00 16 25 C -0.08 -2.22 8.42 71.24 0.60 -1.62 16 26 H 0.07 1.69 7.39 -2.39 -0.02 1.68 16 27 H 0.04 1.35 8.14 -2.38 -0.02 1.34 16 28 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.04 1.74 6.22 -2.39 -0.01 1.72 16 30 H 0.07 2.11 4.74 -2.39 -0.01 2.10 16 31 H 0.08 2.94 3.80 -2.39 -0.01 2.93 16 32 H 0.05 2.16 6.78 -2.39 -0.02 2.14 16 33 H 0.00 0.04 7.94 -2.39 -0.02 0.02 16 34 H -0.01 -0.80 6.10 -2.39 -0.01 -0.81 16 35 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 36 H 0.07 2.46 7.84 -2.39 -0.02 2.44 16 37 H 0.06 1.98 5.28 -2.39 -0.01 1.97 16 38 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.08 1.28 7.96 -2.39 -0.02 1.26 16 40 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.43 3.70 9.11 -74.06 -0.67 3.02 16 42 H 0.07 1.85 5.66 -2.39 -0.01 1.84 16 43 H 0.07 1.86 5.47 -2.39 -0.01 1.84 16 44 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -71.02 349.81 1.18 -69.84 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -0.45 Total: 18.47 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: 4.96 Total: -11.63 kcal Atomic # 7 Polarization: -90.33 SS G_CDS: -4.95 Total: -95.27 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.41 Total: -27.67 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -71.02 1.18 -69.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140496199.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.021 kcal (2) G-P(sol) polarization free energy of solvation -71.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds