Wall clock time and date at job start Tue Mar 31 2020 06:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47218 * 2 1 4 4 N 1.46906 * 109.46899 * 179.48054 * 3 2 1 5 5 C 1.46900 * 111.00074 * 288.01862 * 4 3 2 6 6 C 1.50698 * 109.46837 * 160.35729 * 5 4 3 7 7 H 1.08000 * 120.00351 * 4.66912 * 6 5 4 8 8 C 1.37879 * 119.99839 * 184.65839 * 6 5 4 9 9 N 1.31515 * 120.00173 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99981 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47126 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47172 * 120.00463 * 10 8 6 13 13 H 1.48503 * 109.46999 * 240.00551 * 10 8 6 14 14 C 1.46906 * 110.99835 * 164.06811 * 4 3 2 15 15 C 1.50702 * 109.47034 * 293.95362 * 14 4 3 16 16 C 1.35476 * 125.50794 * 264.97314 * 15 14 4 17 17 C 1.39797 * 107.84784 * 180.02562 * 16 15 14 18 18 C 1.38003 * 106.96362 * 359.74174 * 17 16 15 19 19 C 1.46490 * 126.26462 * 180.25447 * 18 17 16 20 20 O 1.21626 * 119.99985 * 0.18534 * 19 18 17 21 21 O 1.34893 * 120.00326 * 180.19508 * 19 18 17 22 22 C 1.45199 * 117.00264 * 180.02562 * 21 19 18 23 23 C 1.52993 * 109.47279 * 179.97438 * 22 21 19 24 24 N 1.34963 * 125.50583 * 85.00130 * 15 14 4 25 25 H 0.97004 * 125.63317 * 359.97438 * 24 15 14 26 26 H 1.09001 * 109.47519 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47161 * 300.00154 * 1 2 3 28 28 H 1.09004 * 109.47065 * 59.99984 * 1 2 3 29 29 H 1.09000 * 109.47161 * 239.99846 * 2 1 3 30 30 H 1.09004 * 109.47065 * 120.00016 * 2 1 3 31 31 H 1.09003 * 109.47185 * 59.48430 * 3 2 1 32 32 H 1.08997 * 109.46965 * 299.47843 * 3 2 1 33 33 H 1.08996 * 109.47121 * 280.36358 * 5 4 3 34 34 H 1.09003 * 109.46813 * 40.36165 * 5 4 3 35 35 H 0.96999 * 120.00124 * 179.97438 * 9 8 6 36 36 H 1.08991 * 109.47192 * 173.95162 * 14 4 3 37 37 H 1.09002 * 109.46893 * 53.94931 * 14 4 3 38 38 H 1.08003 * 126.07929 * 0.06366 * 16 15 14 39 39 H 1.08001 * 126.52258 * 179.97438 * 17 16 15 40 40 H 1.09002 * 109.46921 * 299.99368 * 22 21 19 41 41 H 1.09005 * 109.46891 * 59.99490 * 22 21 19 42 42 H 1.09007 * 109.47003 * 59.99680 * 23 22 21 43 43 H 1.08996 * 109.47752 * 179.97438 * 23 22 21 44 44 H 1.08996 * 109.47293 * 300.00240 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 0.0126 5 6 4.0242 1.0221 1.3224 6 6 5.4548 0.5707 1.1782 7 1 5.9572 0.6641 0.2267 8 6 6.1223 0.0385 2.2609 9 7 5.5104 -0.0756 3.4194 10 14 7.8957 -0.5204 2.0823 11 1 8.3506 -0.2858 0.6883 12 1 8.7539 0.2490 3.0186 13 1 7.9926 -1.9682 2.3980 14 6 4.0387 2.7601 -0.3634 15 6 3.6924 3.0490 -1.8013 16 6 4.4965 2.8159 -2.8665 17 6 3.8119 3.2196 -4.0166 18 6 2.5813 3.6917 -3.6078 19 6 1.5232 4.2167 -4.4742 20 8 1.6894 4.2614 -5.6783 21 8 0.3646 4.6506 -3.9368 22 6 -0.6393 5.1572 -4.8554 23 6 -1.8745 5.5989 -4.0681 24 7 2.5314 3.5824 -2.2361 25 1 1.7837 3.8420 -1.6752 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6691 1.9590 0.8853 32 1 1.6843 1.9536 -0.8946 33 1 3.9760 1.8601 2.0178 34 1 3.4201 0.1987 1.7033 35 1 5.9799 -0.4503 4.1811 36 1 5.1219 2.7641 -0.2426 37 1 3.5988 3.5246 0.2770 38 1 5.4896 2.3927 -2.8331 39 1 4.1753 3.1679 -5.0323 40 1 -0.2341 6.0078 -5.4035 41 1 -0.9183 4.3718 -5.5579 42 1 -1.5958 6.3842 -3.3653 43 1 -2.6280 5.9796 -4.7576 44 1 -2.2796 4.7482 -3.5203 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140696016.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:32 Heat of formation + Delta-G solvation = -50.782907 kcal Electronic energy + Delta-G solvation = -23716.052985 eV Core-core repulsion = 20247.957523 eV Total energy + Delta-G solvation = -3468.095462 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.38559 -39.96573 -37.11506 -36.60586 -33.20400 -32.46811 -32.04111 -30.98521 -29.98884 -27.29128 -26.53235 -24.27419 -23.44498 -22.29240 -21.57776 -20.45478 -20.24686 -19.62383 -18.46409 -16.92491 -16.73418 -16.53586 -15.27899 -15.12611 -14.68209 -14.48956 -14.25117 -14.01871 -13.75518 -13.65407 -13.16275 -13.14640 -12.88000 -12.52930 -12.43890 -12.17628 -11.95769 -11.89749 -11.87487 -11.58623 -11.23071 -11.09726 -10.78525 -10.76439 -10.70941 -10.62209 -10.51637 -10.19715 -9.77542 -9.27530 -8.86079 -8.46047 -8.03700 -7.38132 -6.05917 -4.07239 1.27306 2.48635 2.79082 3.22365 3.25337 3.30175 3.38261 3.43107 4.40521 4.64016 4.64237 4.77878 4.83947 4.97449 5.09758 5.30107 5.30797 5.37252 5.44002 5.46574 5.48111 5.51529 5.66010 5.73747 5.80535 5.88237 6.00045 6.12118 6.18425 6.22719 6.26394 6.30237 6.43325 6.61014 6.76331 6.92729 7.06243 7.14743 7.23398 7.48339 7.71050 7.77019 8.01938 8.08870 8.45249 9.00735 9.57448 11.04624 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019338 B = 0.003593 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.601313 B = 7791.248383 C = 8779.842220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C 0.053 3.947 4 N -0.528 5.528 5 C 0.191 3.809 6 C -0.505 4.505 7 H 0.066 0.934 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.897 3.103 11 H -0.271 1.271 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.118 3.882 15 C 0.100 3.900 16 C -0.197 4.197 17 C -0.087 4.087 18 C -0.067 4.067 19 C 0.541 3.459 20 O -0.509 6.509 21 O -0.365 6.365 22 C 0.065 3.935 23 C -0.153 4.153 24 N -0.525 5.525 25 H 0.417 0.583 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.023 0.977 32 H 0.052 0.948 33 H -0.010 1.010 34 H 0.040 0.960 35 H 0.261 0.739 36 H 0.112 0.888 37 H 0.031 0.969 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.828 9.229 -11.466 18.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.076 4.076 4 N -0.253 5.253 5 C 0.067 3.933 6 C -0.544 4.544 7 H 0.084 0.916 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.725 3.275 11 H -0.195 1.195 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.010 4.010 15 C -0.020 4.020 16 C -0.221 4.221 17 C -0.114 4.114 18 C -0.176 4.176 19 C 0.388 3.612 20 O -0.398 6.398 21 O -0.283 6.283 22 C -0.009 4.009 23 C -0.210 4.210 24 N -0.122 5.122 25 H 0.256 0.744 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.008 0.992 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.130 0.870 37 H 0.049 0.951 38 H 0.167 0.833 39 H 0.165 0.835 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.783 8.926 -11.940 19.002 hybrid contribution 0.187 0.355 0.761 0.860 sum -11.596 9.281 -11.179 18.590 Atomic orbital electron populations 1.21743 0.96697 1.01201 1.00944 1.21480 0.93946 0.96878 1.03314 1.22143 0.89871 0.97042 0.98555 1.62190 1.04965 1.23695 1.34439 1.19834 0.96081 0.95183 0.82207 1.21201 0.96374 1.40361 0.96448 0.91602 1.24986 0.98451 0.95935 0.95220 1.69959 1.37032 1.45879 1.01040 0.86458 0.84574 0.78291 0.78219 1.19510 1.21189 1.21083 1.20742 1.02893 0.90987 0.86427 1.20845 0.85706 0.98061 0.97435 1.20728 1.01894 1.09049 0.90437 1.21330 0.91304 0.99318 0.99472 1.19126 0.97111 1.18848 0.82546 1.19834 0.80401 0.74517 0.86492 1.90875 1.80319 1.53620 1.15005 1.86572 1.25683 1.74090 1.41981 1.23000 0.87051 0.99090 0.91721 1.21815 0.95518 1.02465 1.01221 1.41988 1.15434 1.48540 1.06189 0.74439 0.92913 0.93177 0.93469 0.91529 0.91043 0.95915 0.92988 0.99211 0.94207 0.92975 0.87030 0.95051 0.83297 0.83487 0.91179 0.91134 0.91488 0.90167 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.16 0.37 -1.59 16 2 C -0.12 -1.97 6.01 -26.73 -0.16 -2.13 16 3 C 0.05 0.89 4.83 -3.82 -0.02 0.88 16 4 N -0.53 -10.52 4.37 -237.51 -1.04 -11.56 16 5 C 0.19 4.65 4.59 -4.98 -0.02 4.63 16 6 C -0.51 -13.45 8.61 -34.44 -0.30 -13.75 16 7 H 0.07 1.74 7.66 -52.49 -0.40 1.34 16 8 C 0.06 1.51 5.46 -17.82 -0.10 1.41 16 9 N -0.90 -25.85 13.29 55.43 0.74 -25.11 16 10 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 C 0.12 2.06 5.32 -4.97 -0.03 2.03 16 15 C 0.10 1.54 5.89 -82.20 -0.48 1.06 16 16 C -0.20 -3.01 10.71 -39.98 -0.43 -3.44 16 17 C -0.09 -1.27 10.67 -39.09 -0.42 -1.69 16 18 C -0.07 -0.97 7.10 -81.99 -0.58 -1.55 16 19 C 0.54 7.76 7.93 34.05 0.27 8.03 16 20 O -0.51 -8.26 16.68 -19.36 -0.32 -8.58 16 21 O -0.37 -4.46 10.23 -41.02 -0.42 -4.88 16 22 C 0.07 0.61 6.20 37.15 0.23 0.84 16 23 C -0.15 -1.01 10.29 37.15 0.38 -0.63 16 24 N -0.53 -7.23 5.05 -5.82 -0.03 -7.25 16 25 H 0.42 4.97 8.29 -40.82 -0.34 4.64 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.34 6.52 -51.93 -0.34 1.00 16 31 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 32 H 0.05 0.80 5.44 -51.93 -0.28 0.51 16 33 H -0.01 -0.26 8.00 -51.93 -0.42 -0.67 16 34 H 0.04 1.04 6.24 -51.93 -0.32 0.72 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.11 2.07 7.32 -51.93 -0.38 1.69 16 37 H 0.03 0.52 8.12 -51.93 -0.42 0.09 16 38 H 0.15 2.16 8.06 -52.48 -0.42 1.74 16 39 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 367.33 15.07 5.54 5.54 Total: -1.00 -30.12 367.33 -8.95 -39.07 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -7.11 Total: 2.66 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -1.28 Total: -5.90 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: -0.33 Total: -43.92 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.74 Total: -13.46 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.12 -8.95 -39.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140696016.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.717 kcal (2) G-P(sol) polarization free energy of solvation -30.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds