Wall clock time and date at job start Tue Mar 31 2020 06:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47218 * 2 1 4 4 N 1.46906 * 109.46899 * 179.48054 * 3 2 1 5 5 C 1.46900 * 111.00074 * 288.01862 * 4 3 2 6 6 C 1.50698 * 109.46837 * 160.35729 * 5 4 3 7 7 H 1.08000 * 120.00351 * 4.66912 * 6 5 4 8 8 C 1.37879 * 119.99839 * 184.65839 * 6 5 4 9 9 N 1.31515 * 120.00173 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99981 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47126 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47172 * 120.00463 * 10 8 6 13 13 H 1.48503 * 109.46999 * 240.00551 * 10 8 6 14 14 C 1.46906 * 110.99835 * 164.06811 * 4 3 2 15 15 C 1.50702 * 109.47034 * 293.95362 * 14 4 3 16 16 C 1.35476 * 125.50794 * 264.97314 * 15 14 4 17 17 C 1.39797 * 107.84784 * 180.02562 * 16 15 14 18 18 C 1.38003 * 106.96362 * 359.74174 * 17 16 15 19 19 C 1.46490 * 126.26462 * 180.25447 * 18 17 16 20 20 O 1.21626 * 119.99985 * 0.18534 * 19 18 17 21 21 O 1.34893 * 120.00326 * 180.19508 * 19 18 17 22 22 C 1.45199 * 117.00264 * 180.02562 * 21 19 18 23 23 C 1.52993 * 109.47279 * 179.97438 * 22 21 19 24 24 N 1.34963 * 125.50583 * 85.00130 * 15 14 4 25 25 H 0.97004 * 125.63317 * 359.97438 * 24 15 14 26 26 H 1.09001 * 109.47519 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47161 * 300.00154 * 1 2 3 28 28 H 1.09004 * 109.47065 * 59.99984 * 1 2 3 29 29 H 1.09000 * 109.47161 * 239.99846 * 2 1 3 30 30 H 1.09004 * 109.47065 * 120.00016 * 2 1 3 31 31 H 1.09003 * 109.47185 * 59.48430 * 3 2 1 32 32 H 1.08997 * 109.46965 * 299.47843 * 3 2 1 33 33 H 1.08996 * 109.47121 * 280.36358 * 5 4 3 34 34 H 1.09003 * 109.46813 * 40.36165 * 5 4 3 35 35 H 0.96999 * 120.00124 * 179.97438 * 9 8 6 36 36 H 1.08991 * 109.47192 * 173.95162 * 14 4 3 37 37 H 1.09002 * 109.46893 * 53.94931 * 14 4 3 38 38 H 1.08003 * 126.07929 * 0.06366 * 16 15 14 39 39 H 1.08001 * 126.52258 * 179.97438 * 17 16 15 40 40 H 1.09002 * 109.46921 * 299.99368 * 22 21 19 41 41 H 1.09005 * 109.46891 * 59.99490 * 22 21 19 42 42 H 1.09007 * 109.47003 * 59.99680 * 23 22 21 43 43 H 1.08996 * 109.47752 * 179.97438 * 23 22 21 44 44 H 1.08996 * 109.47293 * 300.00240 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 0.0126 5 6 4.0242 1.0221 1.3224 6 6 5.4548 0.5707 1.1782 7 1 5.9572 0.6641 0.2267 8 6 6.1223 0.0385 2.2609 9 7 5.5104 -0.0756 3.4194 10 14 7.8957 -0.5204 2.0823 11 1 8.3506 -0.2858 0.6883 12 1 8.7539 0.2490 3.0186 13 1 7.9926 -1.9682 2.3980 14 6 4.0387 2.7601 -0.3634 15 6 3.6924 3.0490 -1.8013 16 6 4.4965 2.8159 -2.8665 17 6 3.8119 3.2196 -4.0166 18 6 2.5813 3.6917 -3.6078 19 6 1.5232 4.2167 -4.4742 20 8 1.6894 4.2614 -5.6783 21 8 0.3646 4.6506 -3.9368 22 6 -0.6393 5.1572 -4.8554 23 6 -1.8745 5.5989 -4.0681 24 7 2.5314 3.5824 -2.2361 25 1 1.7837 3.8420 -1.6752 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6691 1.9590 0.8853 32 1 1.6843 1.9536 -0.8946 33 1 3.9760 1.8601 2.0178 34 1 3.4201 0.1987 1.7033 35 1 5.9799 -0.4503 4.1811 36 1 5.1219 2.7641 -0.2426 37 1 3.5988 3.5246 0.2770 38 1 5.4896 2.3927 -2.8331 39 1 4.1753 3.1679 -5.0323 40 1 -0.2341 6.0078 -5.4035 41 1 -0.9183 4.3718 -5.5579 42 1 -1.5958 6.3842 -3.3653 43 1 -2.6280 5.9796 -4.7576 44 1 -2.2796 4.7482 -3.5203 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140696016.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:32 Heat of formation + Delta-G solvation = -67.941587 kcal Electronic energy + Delta-G solvation = -23716.797041 eV Core-core repulsion = 20247.957523 eV Total energy + Delta-G solvation = -3468.839518 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.55186 -41.03938 -38.64190 -37.66879 -34.92719 -34.08396 -32.80908 -32.12949 -31.32584 -29.09749 -27.76905 -25.71250 -24.64276 -23.47796 -22.84603 -21.68743 -21.60446 -20.88002 -19.58599 -18.55746 -17.98641 -17.67402 -16.89579 -16.46170 -16.21370 -15.82203 -15.64672 -15.22837 -14.87985 -14.75541 -14.43405 -14.26966 -13.98810 -13.82468 -13.56285 -13.52318 -13.38282 -13.04402 -12.96873 -12.85433 -12.61103 -12.56141 -12.49933 -12.28804 -12.01286 -11.83142 -11.80266 -11.58029 -11.39329 -11.23536 -10.55287 -10.01321 -9.28564 -8.99689 -8.15233 -6.23750 0.11962 1.44339 1.46408 1.50859 1.57776 1.59786 2.09254 2.10630 2.44911 3.17114 3.35838 3.75783 3.80272 3.99291 4.03090 4.05420 4.10012 4.25335 4.32914 4.33073 4.48511 4.55775 4.62962 4.67262 4.79289 4.82684 4.90183 4.93111 4.96100 5.08939 5.14258 5.15596 5.23630 5.29321 5.35255 5.35715 5.42940 5.71844 5.75570 5.90503 6.11374 6.30615 6.40292 6.60497 6.63300 6.91867 7.45595 8.95292 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019338 B = 0.003593 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.601313 B = 7791.248383 C = 8779.842220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C 0.054 3.946 4 N -0.537 5.537 5 C 0.208 3.792 6 C -0.515 4.515 7 H 0.065 0.935 8 C 0.003 3.997 9 N -0.935 5.935 10 Si 0.963 3.037 11 H -0.261 1.261 12 H -0.281 1.281 13 H -0.283 1.283 14 C 0.123 3.877 15 C 0.091 3.909 16 C -0.202 4.202 17 C -0.093 4.093 18 C -0.066 4.066 19 C 0.545 3.455 20 O -0.531 6.531 21 O -0.365 6.365 22 C 0.055 3.945 23 C -0.147 4.147 24 N -0.514 5.514 25 H 0.427 0.573 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.024 0.976 32 H 0.074 0.926 33 H -0.033 1.033 34 H 0.015 0.985 35 H 0.262 0.738 36 H 0.096 0.904 37 H 0.041 0.959 38 H 0.152 0.848 39 H 0.160 0.840 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.103 0.897 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.674 9.907 -12.789 20.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.155 4.155 3 C -0.074 4.074 4 N -0.262 5.262 5 C 0.082 3.918 6 C -0.554 4.554 7 H 0.083 0.917 8 C -0.195 4.195 9 N -0.576 5.576 10 Si 0.788 3.212 11 H -0.185 1.185 12 H -0.207 1.207 13 H -0.209 1.209 14 C -0.005 4.005 15 C -0.029 4.029 16 C -0.226 4.226 17 C -0.120 4.120 18 C -0.176 4.176 19 C 0.392 3.608 20 O -0.421 6.421 21 O -0.282 6.282 22 C -0.018 4.018 23 C -0.204 4.204 24 N -0.111 5.111 25 H 0.267 0.733 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.042 0.958 32 H 0.092 0.908 33 H -0.016 1.016 34 H 0.033 0.967 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.059 0.941 38 H 0.170 0.830 39 H 0.178 0.822 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.122 0.878 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.660 9.624 -13.266 20.710 hybrid contribution 0.358 0.202 1.116 1.189 sum -12.302 9.826 -12.150 19.888 Atomic orbital electron populations 1.21674 0.93704 1.02337 1.02016 1.21453 0.96565 0.96119 1.01357 1.22212 0.88007 0.97637 0.99555 1.62084 1.06882 1.25581 1.31616 1.19442 0.95044 0.93431 0.83851 1.21516 0.97511 1.39967 0.96357 0.91659 1.25824 1.02638 0.96095 0.94898 1.70078 1.38783 1.46921 1.01829 0.85425 0.79552 0.77642 0.78565 1.18532 1.20674 1.20939 1.20589 1.01996 0.89969 0.87965 1.20450 0.86688 0.99524 0.96280 1.20874 1.02172 1.08860 0.90674 1.21518 0.91342 0.99219 0.99911 1.19265 0.97307 1.18337 0.82694 1.19762 0.80862 0.74140 0.86005 1.90865 1.80852 1.54574 1.15828 1.86572 1.25351 1.73638 1.42625 1.23346 0.87205 0.99188 0.92018 1.21839 0.94579 1.02475 1.01483 1.41868 1.15185 1.47941 1.06102 0.73350 0.91844 0.92582 0.91831 0.92405 0.94040 0.95824 0.90753 1.01560 0.96687 0.92874 0.88556 0.94062 0.82990 0.82238 0.90895 0.91019 0.91343 0.87844 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.91 71.98 0.71 -2.74 16 2 C -0.12 -3.87 6.01 30.59 0.18 -3.69 16 3 C 0.05 1.81 4.83 86.30 0.42 2.23 16 4 N -0.54 -21.59 4.37 -905.35 -3.96 -25.54 16 5 C 0.21 10.44 4.59 85.56 0.39 10.84 16 6 C -0.52 -27.92 8.61 25.60 0.22 -27.70 16 7 H 0.07 3.47 7.66 -2.91 -0.02 3.45 16 8 C 0.00 0.18 5.46 84.66 0.46 0.64 16 9 N -0.94 -54.84 13.29 21.45 0.28 -54.55 16 10 Si 0.96 43.38 29.54 68.60 2.03 45.40 16 11 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 14 C 0.12 4.27 5.32 85.56 0.46 4.73 16 15 C 0.09 2.72 5.89 41.44 0.24 2.96 16 16 C -0.20 -5.94 10.71 22.01 0.24 -5.71 16 17 C -0.09 -2.59 10.67 22.59 0.24 -2.34 16 18 C -0.07 -1.80 7.10 40.32 0.29 -1.51 16 19 C 0.54 14.71 7.93 69.97 0.55 15.27 16 20 O -0.53 -16.45 16.68 19.42 0.32 -16.13 16 21 O -0.36 -8.17 10.23 -58.08 -0.59 -8.76 16 22 C 0.06 0.92 6.20 71.98 0.45 1.37 16 23 C -0.15 -1.55 10.29 71.98 0.74 -0.81 16 24 N -0.51 -13.27 5.05 -172.32 -0.87 -14.14 16 25 H 0.43 9.27 8.29 -92.70 -0.77 8.50 16 26 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 30 H 0.04 1.61 6.52 -2.39 -0.02 1.59 16 31 H 0.02 0.79 8.05 -2.39 -0.02 0.77 16 32 H 0.07 2.15 5.44 -2.39 -0.01 2.14 16 33 H -0.03 -1.79 8.00 -2.39 -0.02 -1.81 16 34 H 0.02 0.83 6.24 -2.39 -0.01 0.81 16 35 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 36 H 0.10 3.62 7.32 -2.39 -0.02 3.61 16 37 H 0.04 1.34 8.12 -2.39 -0.02 1.32 16 38 H 0.15 4.30 8.06 -2.91 -0.02 4.28 16 39 H 0.16 3.94 8.06 -2.91 -0.02 3.92 16 40 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 43 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -64.66 367.33 3.02 -61.64 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.22 Total: 18.55 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: 5.59 Total: -6.47 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -4.54 Total: -94.23 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.27 Total: -24.89 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -64.66 3.02 -61.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140696016.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.305 kcal (2) G-P(sol) polarization free energy of solvation -64.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds