Wall clock time and date at job start Tue Mar 31 2020 06:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46577 * 2 1 4 4 N 1.46904 * 109.46978 * 173.55080 * 3 2 1 5 5 C 1.46896 * 110.99901 * 69.36392 * 4 3 2 6 6 C 1.50694 * 109.47586 * 282.89431 * 5 4 3 7 7 H 1.08002 * 120.00014 * 354.37077 * 6 5 4 8 8 C 1.37872 * 120.00365 * 174.37048 * 6 5 4 9 9 N 1.31517 * 120.00330 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 119.99869 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47364 * 90.00077 * 10 8 6 12 12 H 1.48501 * 109.47415 * 210.00086 * 10 8 6 13 13 H 1.48503 * 109.47222 * 330.00211 * 10 8 6 14 14 C 1.46897 * 110.99848 * 193.32381 * 4 3 2 15 15 C 1.50697 * 109.47396 * 71.26300 * 14 4 3 16 16 C 1.39141 * 120.81435 * 80.43169 * 15 14 4 17 17 O 1.35908 * 120.47275 * 359.95642 * 16 15 14 18 18 C 1.38712 * 119.05132 * 179.97438 * 16 15 14 19 19 C 1.50699 * 119.65531 * 179.97438 * 18 16 15 20 20 N 1.31839 * 120.68635 * 0.02562 * 18 16 15 21 21 C 1.31852 * 121.77736 * 359.97135 * 20 18 16 22 22 C 1.38254 * 120.88901 * 0.02562 * 21 20 18 23 23 C 1.50696 * 120.38901 * 180.02562 * 22 21 20 24 24 O 1.42898 * 109.47169 * 5.10201 * 23 22 21 25 25 H 1.09002 * 109.46777 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47370 * 299.99676 * 1 2 3 27 27 H 1.08997 * 109.47592 * 60.00372 * 1 2 3 28 28 H 1.08996 * 109.47370 * 240.00324 * 2 1 3 29 29 H 1.08990 * 109.47373 * 119.99915 * 2 1 3 30 30 H 1.08995 * 109.47022 * 53.55079 * 3 2 1 31 31 H 1.08998 * 109.47033 * 293.54734 * 3 2 1 32 32 H 1.09000 * 109.47264 * 42.89630 * 5 4 3 33 33 H 1.09004 * 109.46806 * 162.89402 * 5 4 3 34 34 H 0.97002 * 120.00045 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.47080 * 311.25926 * 14 4 3 36 36 H 1.09000 * 109.47051 * 191.25975 * 14 4 3 37 37 H 0.96703 * 114.00000 * 270.02404 * 17 16 15 38 38 H 1.09000 * 109.47177 * 270.02348 * 19 18 16 39 39 H 1.09002 * 109.46996 * 30.02035 * 19 18 16 40 40 H 1.08995 * 109.46894 * 150.02370 * 19 18 16 41 41 H 1.08005 * 119.55305 * 179.97438 * 21 20 18 42 42 H 1.09004 * 109.47100 * 125.09983 * 23 22 21 43 43 H 1.08993 * 109.47301 * 245.10096 * 23 22 21 44 44 H 0.96701 * 114.00031 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5007 1.4456 0.1556 5 6 4.1591 0.9157 -1.0459 6 6 4.0470 -0.5870 -1.0588 7 1 3.6189 -1.1039 -0.2126 8 6 4.4910 -1.3021 -2.1508 9 7 4.3936 -2.6137 -2.1618 10 14 5.2308 -0.4082 -3.6146 11 1 6.6968 -0.2705 -3.4214 12 1 4.9655 -1.1828 -4.8535 13 1 4.6184 0.9395 -3.7328 14 6 3.9932 2.7921 0.4754 15 6 3.5951 3.1513 1.8837 16 6 4.3233 2.6813 2.9722 17 8 5.4096 1.8867 2.7833 18 6 3.9246 3.0351 4.2528 19 6 4.7031 2.5332 5.4415 20 7 2.8710 3.8050 4.4408 21 6 2.1595 4.2670 3.4314 22 6 2.4950 3.9577 2.1263 23 6 1.6743 4.4923 0.9811 24 8 0.6789 5.3855 1.4846 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.5854 1.9886 0.8266 31 1 1.7739 1.9219 -0.9421 32 1 3.6770 1.3236 -1.9343 33 1 5.2110 1.2015 -1.0397 34 1 4.7063 -3.1168 -2.9300 35 1 3.5604 3.5118 -0.2194 36 1 5.0796 2.8116 0.3889 37 1 5.2069 0.9413 2.7653 38 1 4.2896 1.5799 5.7705 39 1 5.7478 2.3987 5.1611 40 1 4.6350 3.2580 6.2527 41 1 1.3027 4.8948 3.6268 42 1 2.3235 5.0259 0.2868 43 1 1.1907 3.6643 0.4630 44 1 0.1125 5.7689 0.8010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140868273.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:41 Heat of formation + Delta-G solvation = -56.616388 kcal Electronic energy + Delta-G solvation = -24922.452249 eV Core-core repulsion = 21454.103828 eV Total energy + Delta-G solvation = -3468.348421 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.71925 -37.64022 -37.34019 -36.47112 -33.85495 -32.65016 -32.20771 -31.01314 -28.79104 -28.02647 -26.39840 -25.19996 -24.15251 -22.15010 -21.25739 -20.63734 -19.85882 -17.99218 -17.87674 -16.79938 -16.32586 -15.93856 -15.57141 -15.01787 -14.73274 -14.67135 -14.12882 -14.01363 -13.92618 -13.58809 -13.16543 -12.69148 -12.57576 -12.35022 -12.29224 -12.21620 -12.09707 -11.98773 -11.57767 -11.30895 -11.12677 -10.96559 -10.68126 -10.46149 -10.38359 -10.28689 -10.10535 -9.74459 -9.26668 -9.17645 -9.09430 -8.57842 -8.44843 -7.55282 -6.10709 -4.05888 1.11338 1.30053 3.22707 3.30209 3.31859 3.67739 3.91101 4.33166 4.35870 4.55912 4.61441 4.74530 4.91840 5.02216 5.18918 5.19988 5.28864 5.47064 5.49832 5.58459 5.64906 5.66407 5.73258 5.81307 5.93524 5.98923 6.05274 6.10177 6.11704 6.21721 6.35868 6.43025 6.54633 6.69265 6.71267 6.80564 6.99823 7.38000 7.38158 7.54408 7.75930 7.82748 7.92245 8.10468 8.58227 8.99139 9.50358 11.01266 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015216 B = 0.005212 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.709986 B = 5370.774650 C = 6037.531366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.065 3.935 4 N -0.519 5.519 5 C 0.159 3.841 6 C -0.504 4.504 7 H 0.090 0.910 8 C 0.069 3.931 9 N -0.898 5.898 10 Si 0.868 3.132 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.269 1.269 14 C 0.087 3.913 15 C -0.043 4.043 16 C 0.085 3.915 17 O -0.485 6.485 18 C 0.096 3.904 19 C -0.099 4.099 20 N -0.476 5.476 21 C 0.110 3.890 22 C -0.134 4.134 23 C 0.116 3.884 24 O -0.570 6.570 25 H 0.051 0.949 26 H 0.040 0.960 27 H 0.044 0.956 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.020 0.980 32 H -0.006 1.006 33 H 0.023 0.977 34 H 0.263 0.737 35 H 0.035 0.965 36 H 0.089 0.911 37 H 0.401 0.599 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.163 0.837 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.800 12.623 7.480 15.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.063 4.063 4 N -0.243 5.243 5 C 0.033 3.967 6 C -0.542 4.542 7 H 0.108 0.892 8 C -0.133 4.133 9 N -0.537 5.537 10 Si 0.696 3.304 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.194 1.194 14 C -0.041 4.041 15 C -0.052 4.052 16 C 0.037 3.963 17 O -0.295 6.295 18 C -0.042 4.042 19 C -0.157 4.157 20 N -0.187 5.187 21 C -0.047 4.047 22 C -0.137 4.137 23 C 0.039 3.961 24 O -0.376 6.376 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.124 0.876 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.011 0.989 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.108 0.892 37 H 0.259 0.741 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.180 0.820 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -4.251 12.701 9.135 16.212 hybrid contribution -0.030 0.389 -3.080 3.105 sum -4.281 13.090 6.055 15.044 Atomic orbital electron populations 1.21801 0.97808 1.00973 1.00134 1.21856 0.92656 0.96213 1.05487 1.22181 0.88143 0.98098 0.97839 1.61989 1.04743 1.17658 1.39914 1.20318 0.93591 0.97180 0.85571 1.21111 1.40219 0.88624 1.04218 0.89164 1.24879 0.95657 0.94679 0.98060 1.69877 1.47522 1.05505 1.30763 0.86975 0.80168 0.80158 0.83097 1.20204 1.21265 1.19415 1.21009 1.01359 0.91805 0.89907 1.20462 0.92629 0.95217 0.96897 1.18915 0.89234 0.96794 0.91309 1.84665 1.28665 1.21643 1.94512 1.21701 0.92947 0.95609 0.93992 1.20607 0.99277 1.01271 0.94513 1.67558 1.05597 1.10071 1.35447 1.22467 0.98135 0.96934 0.87171 1.20450 0.96640 1.00345 0.96263 1.21040 0.89367 0.92624 0.93099 1.86381 1.48743 1.63925 1.38529 0.93015 0.94136 0.93706 0.87590 0.92004 0.92632 0.96178 0.98864 0.95926 0.92654 0.94679 0.89222 0.74115 0.90637 0.90147 0.90788 0.82017 0.92231 0.91137 0.76891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 37.16 0.37 -1.95 16 2 C -0.12 -2.35 4.61 -26.73 -0.12 -2.48 16 3 C 0.07 1.15 3.78 -3.82 -0.01 1.13 16 4 N -0.52 -9.84 4.44 -237.52 -1.05 -10.89 16 5 C 0.16 3.55 3.85 -4.98 -0.02 3.54 16 6 C -0.50 -13.05 7.24 -34.45 -0.25 -13.30 16 7 H 0.09 2.53 6.42 -52.49 -0.34 2.19 16 8 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 9 N -0.90 -26.10 13.96 55.43 0.77 -25.33 16 10 Si 0.87 20.54 27.58 -169.99 -4.69 15.85 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.27 -6.14 6.38 56.52 0.36 -5.78 16 14 C 0.09 1.43 4.61 -4.98 -0.02 1.41 16 15 C -0.04 -0.67 4.85 -104.18 -0.50 -1.18 16 16 C 0.09 1.32 6.68 -39.07 -0.26 1.06 16 17 O -0.48 -7.26 11.92 -19.45 -0.23 -7.49 16 18 C 0.10 1.41 6.80 -82.41 -0.56 0.85 16 19 C -0.10 -1.16 9.96 36.00 0.36 -0.80 16 20 N -0.48 -7.36 10.27 -9.35 -0.10 -7.45 16 21 C 0.11 1.61 10.54 -17.54 -0.18 1.43 16 22 C -0.13 -1.93 5.14 -104.51 -0.54 -2.47 16 23 C 0.12 1.38 6.03 36.00 0.22 1.59 16 24 O -0.57 -5.86 12.18 -35.23 -0.43 -6.29 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.11 2.39 5.65 -51.93 -0.29 2.09 16 29 H 0.06 1.24 7.80 -51.93 -0.41 0.84 16 30 H 0.06 0.91 4.78 -51.93 -0.25 0.66 16 31 H 0.02 0.35 7.86 -51.93 -0.41 -0.06 16 32 H -0.01 -0.15 6.45 -51.93 -0.34 -0.48 16 33 H 0.02 0.51 7.34 -51.93 -0.38 0.13 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.04 0.53 6.27 -51.93 -0.33 0.21 16 36 H 0.09 1.53 7.46 -51.93 -0.39 1.14 16 37 H 0.40 5.26 9.06 45.56 0.41 5.67 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.88 7.52 -51.93 -0.39 0.49 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.16 2.16 7.03 -52.48 -0.37 1.79 16 42 H 0.06 0.65 7.34 -51.93 -0.38 0.27 16 43 H 0.07 0.85 5.45 -51.93 -0.28 0.57 16 44 H 0.38 2.11 9.12 45.56 0.42 2.53 16 LS Contribution 344.97 15.07 5.20 5.20 Total: -1.00 -30.47 344.97 -7.16 -37.63 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -5.01 Total: 8.16 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -1.63 Total: -9.38 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: -0.38 Total: -43.68 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.66 Total: -13.78 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.69 Total: 15.85 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.47 -7.16 -37.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140868273.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.983 kcal (2) G-P(sol) polarization free energy of solvation -30.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds