Wall clock time and date at job start Tue Mar 31 2020 06:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46577 * 2 1 4 4 N 1.46904 * 109.46978 * 173.55080 * 3 2 1 5 5 C 1.46896 * 110.99901 * 69.36392 * 4 3 2 6 6 C 1.50694 * 109.47586 * 282.89431 * 5 4 3 7 7 H 1.08002 * 120.00014 * 354.37077 * 6 5 4 8 8 C 1.37872 * 120.00365 * 174.37048 * 6 5 4 9 9 N 1.31517 * 120.00330 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 119.99869 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47364 * 90.00077 * 10 8 6 12 12 H 1.48501 * 109.47415 * 210.00086 * 10 8 6 13 13 H 1.48503 * 109.47222 * 330.00211 * 10 8 6 14 14 C 1.46897 * 110.99848 * 193.32381 * 4 3 2 15 15 C 1.50697 * 109.47396 * 71.26300 * 14 4 3 16 16 C 1.39141 * 120.81435 * 80.43169 * 15 14 4 17 17 O 1.35908 * 120.47275 * 359.95642 * 16 15 14 18 18 C 1.38712 * 119.05132 * 179.97438 * 16 15 14 19 19 C 1.50699 * 119.65531 * 179.97438 * 18 16 15 20 20 N 1.31839 * 120.68635 * 0.02562 * 18 16 15 21 21 C 1.31852 * 121.77736 * 359.97135 * 20 18 16 22 22 C 1.38254 * 120.88901 * 0.02562 * 21 20 18 23 23 C 1.50696 * 120.38901 * 180.02562 * 22 21 20 24 24 O 1.42898 * 109.47169 * 5.10201 * 23 22 21 25 25 H 1.09002 * 109.46777 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47370 * 299.99676 * 1 2 3 27 27 H 1.08997 * 109.47592 * 60.00372 * 1 2 3 28 28 H 1.08996 * 109.47370 * 240.00324 * 2 1 3 29 29 H 1.08990 * 109.47373 * 119.99915 * 2 1 3 30 30 H 1.08995 * 109.47022 * 53.55079 * 3 2 1 31 31 H 1.08998 * 109.47033 * 293.54734 * 3 2 1 32 32 H 1.09000 * 109.47264 * 42.89630 * 5 4 3 33 33 H 1.09004 * 109.46806 * 162.89402 * 5 4 3 34 34 H 0.97002 * 120.00045 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.47080 * 311.25926 * 14 4 3 36 36 H 1.09000 * 109.47051 * 191.25975 * 14 4 3 37 37 H 0.96703 * 114.00000 * 270.02404 * 17 16 15 38 38 H 1.09000 * 109.47177 * 270.02348 * 19 18 16 39 39 H 1.09002 * 109.46996 * 30.02035 * 19 18 16 40 40 H 1.08995 * 109.46894 * 150.02370 * 19 18 16 41 41 H 1.08005 * 119.55305 * 179.97438 * 21 20 18 42 42 H 1.09004 * 109.47100 * 125.09983 * 23 22 21 43 43 H 1.08993 * 109.47301 * 245.10096 * 23 22 21 44 44 H 0.96701 * 114.00031 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5007 1.4456 0.1556 5 6 4.1591 0.9157 -1.0459 6 6 4.0470 -0.5870 -1.0588 7 1 3.6189 -1.1039 -0.2126 8 6 4.4910 -1.3021 -2.1508 9 7 4.3936 -2.6137 -2.1618 10 14 5.2308 -0.4082 -3.6146 11 1 6.6968 -0.2705 -3.4214 12 1 4.9655 -1.1828 -4.8535 13 1 4.6184 0.9395 -3.7328 14 6 3.9932 2.7921 0.4754 15 6 3.5951 3.1513 1.8837 16 6 4.3233 2.6813 2.9722 17 8 5.4096 1.8867 2.7833 18 6 3.9246 3.0351 4.2528 19 6 4.7031 2.5332 5.4415 20 7 2.8710 3.8050 4.4408 21 6 2.1595 4.2670 3.4314 22 6 2.4950 3.9577 2.1263 23 6 1.6743 4.4923 0.9811 24 8 0.6789 5.3855 1.4846 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.5854 1.9886 0.8266 31 1 1.7739 1.9219 -0.9421 32 1 3.6770 1.3236 -1.9343 33 1 5.2110 1.2015 -1.0397 34 1 4.7063 -3.1168 -2.9300 35 1 3.5604 3.5118 -0.2194 36 1 5.0796 2.8116 0.3889 37 1 5.2069 0.9413 2.7653 38 1 4.2896 1.5799 5.7705 39 1 5.7478 2.3987 5.1611 40 1 4.6350 3.2580 6.2527 41 1 1.3027 4.8948 3.6268 42 1 2.3235 5.0259 0.2868 43 1 1.1907 3.6643 0.4630 44 1 0.1125 5.7689 0.8010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140868273.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:40 Heat of formation + Delta-G solvation = -81.219804 kcal Electronic energy + Delta-G solvation = -24923.519133 eV Core-core repulsion = 21454.103828 eV Total energy + Delta-G solvation = -3469.415305 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.85416 -39.02405 -38.42136 -37.47603 -35.15804 -34.48158 -33.61272 -32.21489 -30.03138 -29.57375 -27.69874 -26.24012 -25.62821 -23.40307 -22.86231 -21.96297 -21.24885 -19.02765 -18.95338 -18.73285 -17.37187 -17.18033 -16.76467 -16.44121 -16.16539 -15.82099 -15.65083 -15.36747 -15.14263 -14.67494 -14.60286 -14.32429 -13.91148 -13.77966 -13.51287 -13.27221 -13.19932 -13.09719 -12.96682 -12.78181 -12.63235 -12.32974 -12.13831 -11.96731 -11.94749 -11.75797 -11.42687 -11.30519 -11.10537 -10.62591 -10.37583 -10.26044 -9.53793 -9.06746 -8.19657 -6.17710 0.00695 0.12598 1.36153 1.37934 1.45512 2.38089 2.55055 3.00317 3.12756 3.20409 3.33897 3.47870 3.59935 3.79024 4.01009 4.12755 4.23488 4.28273 4.33973 4.35571 4.43594 4.57166 4.65311 4.69583 4.70231 4.76021 4.77116 4.80386 4.90750 4.95298 5.07667 5.13746 5.15394 5.25902 5.29903 5.45380 5.60374 5.63158 5.77379 6.01388 6.37885 6.64791 6.69691 6.82838 6.87614 7.01167 7.41481 8.95489 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015216 B = 0.005212 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.709986 B = 5370.774650 C = 6037.531366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.119 4.119 3 C 0.071 3.929 4 N -0.529 5.529 5 C 0.169 3.831 6 C -0.492 4.492 7 H 0.057 0.943 8 C 0.011 3.989 9 N -0.947 5.947 10 Si 0.930 3.070 11 H -0.272 1.272 12 H -0.289 1.289 13 H -0.251 1.251 14 C 0.094 3.906 15 C -0.056 4.056 16 C 0.073 3.927 17 O -0.490 6.490 18 C 0.086 3.914 19 C -0.096 4.096 20 N -0.488 5.488 21 C 0.104 3.896 22 C -0.134 4.134 23 C 0.122 3.878 24 O -0.577 6.577 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.038 0.962 30 H 0.075 0.925 31 H 0.029 0.971 32 H -0.006 1.006 33 H 0.024 0.976 34 H 0.263 0.737 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.405 0.595 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.175 0.825 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.534 15.056 7.340 17.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.157 4.157 3 C -0.056 4.056 4 N -0.253 5.253 5 C 0.042 3.958 6 C -0.530 4.530 7 H 0.075 0.925 8 C -0.186 4.186 9 N -0.588 5.588 10 Si 0.756 3.244 11 H -0.197 1.197 12 H -0.215 1.215 13 H -0.175 1.175 14 C -0.034 4.034 15 C -0.065 4.065 16 C 0.025 3.975 17 O -0.301 6.301 18 C -0.052 4.052 19 C -0.153 4.153 20 N -0.200 5.200 21 C -0.053 4.053 22 C -0.137 4.137 23 C 0.044 3.956 24 O -0.387 6.387 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.047 0.953 32 H 0.012 0.988 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.264 0.736 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.192 0.808 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -5.004 15.171 9.000 18.336 hybrid contribution 0.130 -0.351 -2.915 2.939 sum -4.874 14.820 6.085 16.745 Atomic orbital electron populations 1.21716 0.94944 1.01528 1.01719 1.21675 0.95204 0.96606 1.02233 1.22163 0.87305 0.97183 0.98976 1.61830 1.05476 1.19806 1.38213 1.20069 0.93989 0.94707 0.87025 1.21289 1.38282 0.90688 1.02767 0.92524 1.25653 0.96579 0.95245 1.01127 1.70029 1.49719 1.07299 1.31798 0.85971 0.79464 0.79621 0.79389 1.19723 1.21482 1.17505 1.20938 1.00918 0.90569 0.90968 1.20450 0.93541 0.96267 0.96263 1.19111 0.89466 0.97082 0.91857 1.84644 1.28856 1.22075 1.94567 1.22086 0.93016 0.95378 0.94695 1.20653 0.99149 1.01838 0.93662 1.67600 1.05952 1.10388 1.36010 1.22730 0.98388 0.96960 0.87254 1.20695 0.96257 0.99604 0.97132 1.20935 0.89664 0.93037 0.91997 1.86336 1.48825 1.63667 1.39854 0.93104 0.92240 0.92297 0.91758 0.94276 0.90723 0.95319 0.98841 0.95767 0.92832 0.92769 0.90048 0.73571 0.89608 0.89681 0.89989 0.80834 0.91014 0.91115 0.74363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.18 9.91 71.98 0.71 -3.47 16 2 C -0.12 -4.52 4.61 30.60 0.14 -4.38 16 3 C 0.07 2.40 3.78 86.30 0.33 2.73 16 4 N -0.53 -19.57 4.44 -905.38 -4.02 -23.59 16 5 C 0.17 7.41 3.85 85.56 0.33 7.74 16 6 C -0.49 -26.02 7.24 25.60 0.19 -25.84 16 7 H 0.06 3.32 6.42 -2.91 -0.02 3.30 16 8 C 0.01 0.60 5.47 84.65 0.46 1.06 16 9 N -0.95 -56.83 13.96 21.45 0.30 -56.53 16 10 Si 0.93 42.26 27.58 68.60 1.89 44.15 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 12 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 13 H -0.25 -10.57 6.38 99.48 0.63 -9.94 16 14 C 0.09 2.90 4.61 85.56 0.39 3.30 16 15 C -0.06 -1.67 4.85 -19.58 -0.09 -1.76 16 16 C 0.07 2.18 6.68 22.60 0.15 2.33 16 17 O -0.49 -14.48 11.92 -92.51 -1.10 -15.58 16 18 C 0.09 2.45 6.80 42.67 0.29 2.74 16 19 C -0.10 -2.11 9.96 71.24 0.71 -1.40 16 20 N -0.49 -14.36 10.27 -183.49 -1.88 -16.24 16 21 C 0.10 2.82 10.54 84.69 0.89 3.72 16 22 C -0.13 -3.55 5.14 -19.79 -0.10 -3.65 16 23 C 0.12 2.48 6.03 71.23 0.43 2.91 16 24 O -0.58 -9.90 12.18 -148.98 -1.81 -11.72 16 25 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 2.98 5.65 -2.39 -0.01 2.97 16 29 H 0.04 1.62 7.80 -2.39 -0.02 1.60 16 30 H 0.07 2.25 4.78 -2.39 -0.01 2.24 16 31 H 0.03 0.93 7.86 -2.39 -0.02 0.91 16 32 H -0.01 -0.27 6.45 -2.39 -0.02 -0.28 16 33 H 0.02 1.06 7.34 -2.38 -0.02 1.05 16 34 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 35 H 0.05 1.48 6.27 -2.39 -0.01 1.47 16 36 H 0.08 2.66 7.46 -2.39 -0.02 2.64 16 37 H 0.41 10.72 9.06 -74.06 -0.67 10.05 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.08 1.77 7.52 -2.39 -0.02 1.75 16 40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.17 4.22 7.03 -2.91 -0.02 4.20 16 42 H 0.07 1.31 7.34 -2.38 -0.02 1.29 16 43 H 0.07 1.45 5.45 -2.39 -0.01 1.44 16 44 H 0.41 2.96 9.12 -74.06 -0.68 2.29 16 Total: -1.00 -66.11 344.97 -2.18 -68.29 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -0.38 Total: 25.20 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 4.83 Total: -13.98 kcal Atomic # 7 Polarization: -90.75 SS G_CDS: -5.60 Total: -96.36 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -2.92 Total: -27.30 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.89 Total: 44.15 kcal Total: -66.11 -2.18 -68.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140868273.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.933 kcal (2) G-P(sol) polarization free energy of solvation -66.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds