Wall clock time and date at job start Tue Mar 31 2020 06:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46697 * 2 1 4 4 N 1.46900 * 109.47325 * 183.22734 * 3 2 1 5 5 C 1.46899 * 110.99528 * 297.43087 * 4 3 2 6 6 C 1.50696 * 109.47232 * 284.87148 * 5 4 3 7 7 H 1.08000 * 120.00231 * 355.69854 * 6 5 4 8 8 C 1.37882 * 119.99897 * 175.69910 * 6 5 4 9 9 N 1.31511 * 119.99974 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99664 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46962 * 90.00454 * 10 8 6 12 12 H 1.48499 * 109.46804 * 209.99944 * 10 8 6 13 13 H 1.48497 * 109.47379 * 330.00385 * 10 8 6 14 14 C 1.46902 * 111.00140 * 61.38089 * 4 3 2 15 15 C 1.50704 * 109.46948 * 66.04855 * 14 4 3 16 16 C 1.39796 * 126.51412 * 259.68897 * 15 14 4 17 17 C 1.35494 * 107.83966 * 179.89280 * 16 15 14 18 18 N 1.34959 * 108.98178 * 0.37491 * 17 16 15 19 19 H 0.97005 * 125.63164 * 179.76486 * 18 17 16 20 20 C 1.37695 * 108.73437 * 359.76749 * 18 17 16 21 21 C 1.46492 * 126.26541 * 180.02562 * 20 18 17 22 22 O 1.21628 * 119.99919 * 179.97438 * 21 20 18 23 23 O 1.34887 * 119.99950 * 359.97177 * 21 20 18 24 24 C 1.45200 * 117.00055 * 180.02562 * 23 21 20 25 25 C 1.53000 * 109.47418 * 179.97438 * 24 23 21 26 26 H 1.09003 * 109.46943 * 60.00623 * 1 2 3 27 27 H 1.09000 * 109.46372 * 180.02562 * 1 2 3 28 28 H 1.08988 * 109.47236 * 300.00057 * 1 2 3 29 29 H 1.08994 * 109.47002 * 239.99575 * 2 1 3 30 30 H 1.09003 * 109.46943 * 119.99377 * 2 1 3 31 31 H 1.08993 * 109.47732 * 63.22380 * 3 2 1 32 32 H 1.08999 * 109.47221 * 303.22198 * 3 2 1 33 33 H 1.09003 * 109.47265 * 44.87492 * 5 4 3 34 34 H 1.09000 * 109.47315 * 164.87070 * 5 4 3 35 35 H 0.97001 * 119.99433 * 180.02562 * 9 8 6 36 36 H 1.08994 * 109.47158 * 186.05031 * 14 4 3 37 37 H 1.09005 * 109.46992 * 306.05350 * 14 4 3 38 38 H 1.07989 * 126.08488 * 0.03368 * 16 15 14 39 39 H 1.07998 * 125.50822 * 180.11985 * 17 16 15 40 40 H 1.08996 * 109.47308 * 300.00301 * 24 23 21 41 41 H 1.09008 * 109.46999 * 59.99663 * 24 23 21 42 42 H 1.09000 * 109.47519 * 179.97438 * 25 24 23 43 43 H 1.09004 * 109.46955 * 300.00117 * 25 24 23 44 44 H 1.08995 * 109.47024 * 59.99730 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5069 1.4434 -0.0780 5 6 4.0968 0.7892 1.0976 6 6 3.9988 1.7096 2.2868 7 1 3.6075 2.7089 2.1654 8 6 4.4088 1.2760 3.5298 9 7 4.8858 0.0594 3.6774 10 14 4.2879 2.4173 5.0037 11 1 2.9644 2.2460 5.6551 12 1 5.3632 2.0885 5.9737 13 1 4.4400 3.8243 4.5541 14 6 3.9685 0.8095 -1.3202 15 6 3.5463 1.6482 -2.4990 16 6 2.4528 1.4136 -3.3377 17 6 2.4241 2.3986 -4.2677 18 7 3.4596 3.2366 -4.0516 19 1 3.6694 4.0235 -4.5787 20 6 4.1693 2.7903 -2.9593 21 6 5.3661 3.4140 -2.3896 22 8 5.9047 2.9206 -1.4170 23 8 5.8710 4.5354 -2.9437 24 6 7.0590 5.0982 -2.3271 25 6 7.4812 6.3566 -3.0881 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.7246 1.9394 0.9174 32 1 1.6302 1.9727 -0.8597 33 1 3.5581 -0.1348 1.3078 34 1 5.1443 0.5619 0.8995 35 1 5.1738 -0.2457 4.5520 36 1 5.0551 0.7267 -1.3038 37 1 3.5295 -0.1845 -1.4058 38 1 1.7537 0.5945 -3.2573 39 1 1.6933 2.4949 -5.0570 40 1 6.8430 5.3555 -1.2902 41 1 7.8663 4.3665 -2.3592 42 1 8.3727 6.7794 -2.6249 43 1 7.6974 6.0988 -4.1249 44 1 6.6740 7.0883 -3.0564 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144333788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:47 Heat of formation + Delta-G solvation = -64.865630 kcal Electronic energy + Delta-G solvation = -24503.140842 eV Core-core repulsion = 21034.434707 eV Total energy + Delta-G solvation = -3468.706135 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.38299 -40.79544 -38.94423 -37.51215 -34.87059 -33.74397 -32.76946 -32.30046 -30.55918 -29.04199 -27.50536 -25.75830 -24.74445 -23.67881 -23.14933 -21.77369 -21.32444 -20.04519 -19.36012 -18.32589 -17.81909 -17.57987 -16.87034 -16.45252 -16.34558 -16.00653 -15.48504 -15.02221 -14.88105 -14.51100 -14.46236 -14.24683 -14.11395 -13.90055 -13.54445 -13.38367 -13.11054 -12.88937 -12.84681 -12.61759 -12.53540 -12.52402 -12.39483 -12.28622 -12.17697 -11.76679 -11.53045 -11.51066 -11.30188 -11.17810 -10.56151 -9.75955 -9.18507 -8.73927 -8.14810 -6.24669 0.30536 1.36396 1.39294 1.50652 1.63236 1.83001 2.15071 2.33204 2.41807 3.14892 3.61092 3.88342 3.98728 4.05694 4.12113 4.21410 4.23454 4.31168 4.35178 4.38482 4.56669 4.69394 4.75174 4.81926 4.83556 4.90951 4.95105 5.02982 5.10551 5.12449 5.16881 5.21740 5.34115 5.37159 5.46711 5.47768 5.56760 5.71611 5.77768 5.94759 6.16148 6.53353 6.65381 6.76425 6.86140 6.91615 7.43490 8.94573 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011063 B = 0.005772 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.439293 B = 4849.644418 C = 6849.718942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.155 4.155 3 C 0.073 3.927 4 N -0.530 5.530 5 C 0.212 3.788 6 C -0.511 4.511 7 H 0.051 0.949 8 C 0.000 4.000 9 N -0.936 5.936 10 Si 0.966 3.034 11 H -0.268 1.268 12 H -0.280 1.280 13 H -0.271 1.271 14 C 0.119 3.881 15 C -0.061 4.061 16 C -0.227 4.227 17 C 0.071 3.929 18 N -0.513 5.513 19 H 0.436 0.564 20 C -0.062 4.062 21 C 0.523 3.477 22 O -0.517 6.517 23 O -0.364 6.364 24 C 0.055 3.945 25 C -0.139 4.139 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.031 0.969 31 H 0.046 0.954 32 H 0.079 0.921 33 H -0.016 1.016 34 H -0.018 1.018 35 H 0.263 0.737 36 H 0.047 0.953 37 H 0.041 0.959 38 H 0.158 0.842 39 H 0.227 0.773 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.219 8.828 -20.968 23.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.194 4.194 3 C -0.055 4.055 4 N -0.253 5.253 5 C 0.085 3.915 6 C -0.549 4.549 7 H 0.069 0.931 8 C -0.197 4.197 9 N -0.577 5.577 10 Si 0.790 3.210 11 H -0.193 1.193 12 H -0.205 1.205 13 H -0.196 1.196 14 C -0.009 4.009 15 C -0.070 4.070 16 C -0.251 4.251 17 C -0.068 4.068 18 N -0.110 5.110 19 H 0.277 0.723 20 C -0.173 4.173 21 C 0.369 3.631 22 O -0.405 6.405 23 O -0.282 6.282 24 C -0.018 4.018 25 C -0.195 4.195 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.002 0.998 34 H 0.000 1.000 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.176 0.824 39 H 0.243 0.757 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.116 0.884 43 H 0.094 0.906 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.672 9.261 -20.603 23.067 hybrid contribution 0.560 -0.449 1.357 1.535 sum -4.112 8.812 -19.246 21.563 Atomic orbital electron populations 1.21591 0.93444 1.01920 1.02148 1.22050 0.98045 0.98681 1.00584 1.22000 0.87135 0.95523 1.00835 1.62137 1.07485 1.54685 1.01004 1.19337 0.91903 0.92494 0.87720 1.21387 1.40931 0.99513 0.93114 0.93120 1.25873 0.95068 0.96831 1.01931 1.70094 1.44369 1.18753 1.24449 0.85441 0.78140 0.78884 0.78491 1.19330 1.20522 1.19603 1.20409 0.98577 0.94104 0.87849 1.19898 0.96510 0.94352 0.96276 1.21029 1.00963 1.04144 0.98958 1.22659 0.92270 0.90342 1.01511 1.41757 1.21951 1.24145 1.23099 0.72337 1.18900 0.98653 1.01543 0.98234 1.20198 0.83164 0.78714 0.81069 1.91025 1.60022 1.63334 1.26076 1.86493 1.44606 1.39917 1.57170 1.23228 0.84194 0.96883 0.97523 1.21790 1.02676 0.93908 1.01170 0.90735 0.92153 0.93610 0.91610 0.95055 0.93523 0.90234 0.99837 0.99969 0.92840 0.93442 0.94114 0.82448 0.75663 0.92731 0.91844 0.88375 0.90554 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.73 9.91 71.98 0.71 -3.01 16 2 C -0.15 -5.70 5.31 30.60 0.16 -5.54 16 3 C 0.07 3.03 5.05 86.30 0.44 3.47 16 4 N -0.53 -25.81 4.63 -905.38 -4.19 -30.00 16 5 C 0.21 12.48 4.63 85.56 0.40 12.88 16 6 C -0.51 -31.84 8.61 25.60 0.22 -31.62 16 7 H 0.05 3.17 7.81 -2.91 -0.02 3.15 16 8 C 0.00 0.01 5.46 84.66 0.46 0.47 16 9 N -0.94 -59.94 13.29 21.45 0.28 -59.65 16 10 Si 0.97 47.66 29.54 68.60 2.03 49.69 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 13 H -0.27 -13.14 7.11 99.48 0.71 -12.44 16 14 C 0.12 5.04 4.40 85.56 0.38 5.41 16 15 C -0.06 -2.06 4.77 -19.54 -0.09 -2.15 16 16 C -0.23 -5.33 10.13 22.01 0.22 -5.10 16 17 C 0.07 1.10 11.87 83.58 0.99 2.09 16 18 N -0.51 -10.05 6.07 -184.05 -1.12 -11.16 16 19 H 0.44 5.65 8.96 -92.70 -0.83 4.82 16 20 C -0.06 -1.97 7.10 40.32 0.29 -1.69 16 21 C 0.52 19.26 7.93 69.97 0.55 19.82 16 22 O -0.52 -24.26 14.87 19.42 0.29 -23.97 16 23 O -0.36 -10.65 10.23 -58.01 -0.59 -11.24 16 24 C 0.06 1.43 6.20 71.98 0.45 1.87 16 25 C -0.14 -2.19 10.29 71.98 0.74 -1.45 16 26 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 2.25 6.15 -2.39 -0.01 2.23 16 30 H 0.03 1.40 6.33 -2.39 -0.02 1.38 16 31 H 0.05 2.15 7.55 -2.39 -0.02 2.14 16 32 H 0.08 2.88 6.73 -2.39 -0.02 2.87 16 33 H -0.02 -0.98 5.83 -2.39 -0.01 -0.99 16 34 H -0.02 -1.18 7.75 -2.39 -0.02 -1.19 16 35 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 36 H 0.05 2.30 6.76 -2.39 -0.02 2.28 16 37 H 0.04 1.63 5.98 -2.38 -0.01 1.62 16 38 H 0.16 3.15 8.06 -2.92 -0.02 3.13 16 39 H 0.23 1.01 8.06 -2.91 -0.02 0.98 16 40 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 42 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 44 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -82.27 360.98 2.78 -79.48 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.17 Total: 11.41 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 5.92 Total: -4.54 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -5.02 Total: -100.82 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -0.30 Total: -35.21 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -82.27 2.78 -79.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144333788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.615 kcal (2) G-P(sol) polarization free energy of solvation -82.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds