Wall clock time and date at job start Tue Mar 31 2020 08:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50695 * 120.00322 * 2 1 4 4 O 1.42901 * 109.47239 * 135.00196 * 3 2 1 5 5 C 1.42892 * 114.00118 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47263 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99757 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00058 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99996 * 179.97438 * 8 6 5 10 10 C 1.52992 * 109.47237 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.47299 * 180.02562 * 10 9 8 12 12 C 1.29451 * 117.69445 * 95.00025 * 11 10 9 13 13 C 1.50330 * 123.65007 * 181.14193 * 12 11 10 14 14 N 1.47132 * 109.10280 * 348.53955 * 13 12 11 15 15 C 1.36936 * 121.53492 * 223.15848 * 14 13 12 16 16 H 1.07997 * 120.00400 * 156.23953 * 15 14 13 17 17 C 1.38816 * 119.99772 * 336.23726 * 15 14 13 18 18 N 1.31620 * 119.99998 * 344.47294 * 17 15 14 19 19 Si 1.86801 * 119.99831 * 164.47294 * 17 15 14 20 20 H 1.48498 * 109.47091 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47086 * 119.99888 * 19 17 15 22 22 H 1.48500 * 109.46988 * 240.00040 * 19 17 15 23 23 C 1.47334 * 117.08742 * 43.37930 * 14 13 12 24 24 C 1.49968 * 117.69162 * 275.02169 * 11 10 9 25 25 H 1.08007 * 119.99789 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.00792 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99358 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.47367 * 15.00540 * 3 2 1 29 29 H 1.09002 * 109.47342 * 255.00804 * 3 2 1 30 30 H 1.09007 * 109.47289 * 59.99921 * 5 4 3 31 31 H 1.09002 * 109.47596 * 300.00366 * 5 4 3 32 32 H 0.96997 * 120.00154 * 359.97438 * 8 6 5 33 33 H 1.09007 * 109.47130 * 59.99357 * 9 8 6 34 34 H 1.09002 * 109.47078 * 300.00217 * 9 8 6 35 35 H 1.08995 * 109.47291 * 60.00248 * 10 9 8 36 36 H 1.08996 * 109.47224 * 300.00018 * 10 9 8 37 37 H 1.07993 * 118.17889 * 0.85731 * 12 11 10 38 38 H 1.08999 * 109.52397 * 108.64692 * 13 12 11 39 39 H 1.09002 * 109.52075 * 228.83522 * 13 12 11 40 40 H 0.97003 * 119.99843 * 179.97438 * 18 17 15 41 41 H 1.09008 * 109.77605 * 178.39713 * 23 14 13 42 42 H 1.09005 * 109.78096 * 57.59157 * 23 14 13 43 43 H 1.08993 * 109.31804 * 281.28826 * 24 11 10 44 44 H 1.09003 * 109.31610 * 40.71757 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1268 1.2411 0.9526 5 6 3.9078 2.4350 1.0328 6 6 4.9942 2.2565 2.0619 7 8 5.0898 1.2100 2.6674 8 7 5.8589 3.2601 2.3101 9 6 6.9146 3.0867 3.3109 10 6 7.7509 4.3649 3.3966 11 6 8.8374 4.1863 4.4257 12 6 10.0025 3.8046 4.0104 13 6 11.1731 3.5614 4.9216 14 7 10.8576 4.0833 6.2606 15 6 11.7749 4.7955 6.9862 16 1 11.4433 5.4792 7.7536 17 6 13.1312 4.6387 6.7353 18 7 13.5561 3.6080 6.0356 19 14 14.3531 5.8903 7.3908 20 1 13.6261 6.9465 8.1398 21 1 15.3163 5.2143 8.2966 22 1 15.0883 6.5053 6.2566 23 6 9.5118 3.8021 6.7903 24 6 8.4923 4.4629 5.8587 25 1 -0.5400 0.9354 0.0004 26 1 -0.5401 -0.9352 -0.0004 27 1 1.8499 -0.9354 -0.0004 28 1 1.3856 2.1161 0.2661 29 1 2.4755 1.4868 -0.9927 30 1 3.2679 3.2693 1.3205 31 1 4.3580 2.6407 0.0617 32 1 5.7822 4.0972 1.8261 33 1 7.5547 2.2526 3.0230 34 1 6.4644 2.8807 4.2820 35 1 7.1111 5.1991 3.6844 36 1 8.2011 4.5704 2.4255 37 1 10.1401 3.6480 2.9508 38 1 11.3720 2.4914 4.9815 39 1 12.0517 4.0748 4.5309 40 1 14.5038 3.4986 5.8599 41 1 9.4167 4.2160 7.7942 42 1 9.3435 2.7254 6.8170 43 1 8.4935 5.5395 6.0285 44 1 7.4991 4.0680 6.0730 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159600926.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:40 Heat of formation + Delta-G solvation = -48.338788 kcal Electronic energy + Delta-G solvation = -22573.895973 eV Core-core repulsion = 19105.906495 eV Total energy + Delta-G solvation = -3467.989477 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.86653 -39.50792 -38.73267 -36.71467 -35.12098 -34.75654 -33.19890 -31.53325 -30.75018 -29.01226 -27.08919 -26.24543 -24.62338 -23.89534 -22.47538 -21.77867 -20.86004 -19.46319 -18.34402 -17.85596 -17.56789 -17.38706 -17.04018 -16.65124 -16.29446 -15.89583 -15.63272 -15.43030 -15.24274 -14.97405 -14.69827 -14.32202 -14.07596 -13.82846 -13.38158 -13.24366 -13.18075 -13.07087 -12.83010 -12.80361 -12.60529 -12.35168 -12.12634 -11.89798 -11.87359 -11.66852 -11.25103 -10.99264 -10.85863 -10.69757 -10.25808 -10.13435 -9.48448 -8.76078 -7.88420 -5.30589 1.19221 1.41775 1.46434 1.47192 1.56806 1.58477 1.96885 2.50808 3.10329 3.28440 3.65362 3.74639 3.97216 4.06951 4.11450 4.14613 4.18250 4.26435 4.27591 4.33481 4.47471 4.55101 4.59590 4.61787 4.69639 4.86952 4.91416 4.98225 4.98937 5.09304 5.18065 5.23786 5.38794 5.42226 5.50236 5.60708 5.66363 5.70569 5.88392 6.10283 6.28938 6.33232 6.57653 7.12506 7.24738 7.82462 8.37965 9.20420 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.054753 B = 0.002060 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.268904 B =13588.492834 C =13623.693579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.180 4.180 3 C 0.084 3.916 4 O -0.401 6.401 5 C 0.048 3.952 6 C 0.503 3.497 7 O -0.582 6.582 8 N -0.710 5.710 9 C 0.132 3.868 10 C -0.077 4.077 11 C -0.122 4.122 12 C -0.174 4.174 13 C 0.205 3.795 14 N -0.615 5.615 15 C -0.256 4.256 16 H 0.072 0.928 17 C -0.058 4.058 18 N -0.942 5.942 19 Si 0.972 3.028 20 H -0.265 1.265 21 H -0.293 1.293 22 H -0.290 1.290 23 C 0.134 3.866 24 C -0.087 4.087 25 H 0.114 0.886 26 H 0.112 0.888 27 H 0.103 0.897 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.421 0.579 33 H 0.046 0.954 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.001 0.999 39 H 0.056 0.944 40 H 0.249 0.751 41 H 0.059 0.941 42 H 0.015 0.985 43 H 0.070 0.930 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.997 2.801 -15.420 29.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.198 4.198 3 C 0.009 3.991 4 O -0.321 6.321 5 C -0.031 4.031 6 C 0.290 3.710 7 O -0.461 6.461 8 N -0.365 5.365 9 C 0.008 3.992 10 C -0.114 4.114 11 C -0.123 4.123 12 C -0.194 4.194 13 C 0.080 3.920 14 N -0.339 5.339 15 C -0.386 4.386 16 H 0.090 0.910 17 C -0.252 4.252 18 N -0.590 5.590 19 Si 0.800 3.200 20 H -0.189 1.189 21 H -0.220 1.220 22 H -0.216 1.216 23 C 0.008 3.992 24 C -0.126 4.126 25 H 0.132 0.868 26 H 0.131 0.869 27 H 0.121 0.879 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.259 0.741 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.132 0.868 38 H 0.019 0.981 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.033 0.967 43 H 0.089 0.911 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -24.748 1.881 -14.896 28.947 hybrid contribution 1.335 0.447 0.164 1.418 sum -23.413 2.327 -14.732 27.760 Atomic orbital electron populations 1.24058 0.94997 1.03521 0.97785 1.22811 0.96391 0.98204 1.02374 1.21796 0.88291 0.96524 0.92480 1.88010 1.45609 1.36611 1.61829 1.22356 0.92515 0.89417 0.98824 1.21055 0.83010 0.83241 0.83689 1.90739 1.73795 1.29441 1.52150 1.45741 1.31021 1.17761 1.41937 1.21166 0.88423 0.97991 0.91581 1.20793 0.95478 0.96816 0.98314 1.20603 0.94581 1.01183 0.95893 1.22822 0.95810 1.01021 0.99705 1.19390 0.94102 0.94759 0.83777 1.44468 1.11225 1.63404 1.14782 1.19591 0.87041 1.15810 1.16198 0.90999 1.25813 0.98905 0.99084 1.01445 1.70209 1.13814 1.29299 1.45632 0.85128 0.78742 0.78778 0.77341 1.18898 1.22024 1.21646 1.21166 0.85165 0.96445 0.96402 1.20714 0.98738 1.00874 0.92228 0.86792 0.86939 0.87905 0.90565 0.90413 0.86718 0.86911 0.74073 0.93535 0.92496 0.88546 0.89532 0.86822 0.98110 0.92590 0.94159 0.92233 0.96669 0.91129 0.89663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 14.31 67.78 0.97 -0.74 16 2 C -0.18 -2.57 9.89 25.65 0.25 -2.31 16 3 C 0.08 1.06 6.35 71.23 0.45 1.52 16 4 O -0.40 -8.34 9.86 -129.94 -1.28 -9.62 16 5 C 0.05 0.65 6.42 71.24 0.46 1.11 16 6 C 0.50 11.44 7.91 87.66 0.69 12.13 16 7 O -0.58 -20.71 16.50 16.00 0.26 -20.44 16 8 N -0.71 -12.17 5.56 -463.06 -2.57 -14.74 16 9 C 0.13 3.09 5.66 86.38 0.49 3.58 16 10 C -0.08 -1.63 5.32 29.85 0.16 -1.47 16 11 C -0.12 -3.92 5.11 -15.13 -0.08 -4.00 16 12 C -0.17 -6.72 9.47 27.11 0.26 -6.46 16 13 C 0.20 10.40 5.25 85.40 0.45 10.85 16 14 N -0.61 -32.10 3.01 -703.04 -2.12 -34.21 16 15 C -0.26 -14.47 9.71 84.03 0.82 -13.65 16 16 H 0.07 3.91 7.88 -2.91 -0.02 3.89 16 17 C -0.06 -3.32 5.01 84.86 0.43 -2.89 16 18 N -0.94 -57.26 11.07 21.65 0.24 -57.02 16 19 Si 0.97 45.62 29.58 68.60 2.03 47.65 16 20 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 21 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 23 C 0.13 5.70 6.57 86.26 0.57 6.26 16 24 C -0.09 -2.88 5.95 29.65 0.18 -2.70 16 25 H 0.11 0.77 7.90 -2.91 -0.02 0.75 16 26 H 0.11 0.93 8.06 -2.91 -0.02 0.91 16 27 H 0.10 1.71 8.06 -2.91 -0.02 1.69 16 28 H 0.08 0.62 7.86 -2.38 -0.02 0.60 16 29 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.12 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.42 3.49 8.47 -92.71 -0.79 2.71 16 33 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.06 1.51 8.09 -2.39 -0.02 1.49 16 35 H 0.10 1.61 8.11 -2.39 -0.02 1.59 16 36 H 0.09 1.60 7.78 -2.39 -0.02 1.58 16 37 H 0.11 3.80 7.73 -2.91 -0.02 3.78 16 38 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.06 3.17 6.39 -2.39 -0.02 3.16 16 40 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 41 H 0.06 2.44 7.96 -2.38 -0.02 2.42 16 42 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.09 2.33 8.08 -2.39 -0.02 2.31 16 Total: -1.00 -79.74 367.50 2.83 -76.90 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.18 Total: 10.26 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 6.09 Total: 1.23 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -4.45 Total: -105.98 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -1.02 Total: -30.07 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -79.74 2.83 -76.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159600926.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.566 kcal (2) G-P(sol) polarization free energy of solvation -79.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds