Wall clock time and date at job start Tue Mar 31 2020 08:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42898 * 109.46850 * 294.52983 * 3 2 1 5 5 C 1.42904 * 113.99800 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.47257 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47016 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00275 * 359.72982 * 7 6 5 9 9 N 1.34774 * 119.99432 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99709 * 179.72525 * 9 7 6 11 11 C 1.53002 * 109.47205 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.47213 * 175.02174 * 11 10 9 13 13 C 1.52994 * 115.55143 * 278.03840 * 12 11 10 14 14 N 1.46500 * 109.46990 * 303.89478 * 13 12 11 15 15 C 1.36938 * 119.99934 * 175.59434 * 14 13 12 16 16 H 1.08001 * 120.00243 * 0.02562 * 15 14 13 17 17 C 1.38813 * 120.00102 * 180.02562 * 15 14 13 18 18 N 1.31619 * 119.99784 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00290 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47135 * 89.99717 * 19 17 15 21 21 H 1.48496 * 109.47032 * 210.00114 * 19 17 15 22 22 H 1.48499 * 109.46977 * 329.99895 * 19 17 15 23 23 C 1.53001 * 117.49660 * 132.32119 * 12 11 10 24 24 C 1.53000 * 60.00148 * 252.51677 * 23 12 11 25 25 H 4.38442 * 5.44384 * 180.02562 * 4 1 2 26 26 H 1.08999 * 109.46745 * 174.53935 * 3 2 1 27 27 H 1.08990 * 109.47336 * 54.53417 * 3 2 1 28 28 H 1.09002 * 109.46797 * 60.00653 * 5 4 3 29 29 H 1.08992 * 109.47198 * 300.00686 * 5 4 3 30 30 H 1.09002 * 109.46762 * 60.00536 * 6 5 4 31 31 H 1.08998 * 109.46828 * 300.00474 * 6 5 4 32 32 H 0.96993 * 120.00881 * 359.73034 * 9 7 6 33 33 H 1.09008 * 109.47334 * 300.00473 * 10 9 7 34 34 H 1.09000 * 109.47607 * 60.00361 * 10 9 7 35 35 H 1.08994 * 109.47321 * 295.02070 * 11 10 9 36 36 H 1.09000 * 109.46939 * 55.03004 * 11 10 9 37 37 H 1.08996 * 109.47468 * 63.89589 * 13 12 11 38 38 H 1.09007 * 109.47285 * 183.89754 * 13 12 11 39 39 H 0.96999 * 120.00164 * 355.59535 * 14 13 12 40 40 H 0.97005 * 120.00089 * 179.97438 * 18 17 15 41 41 H 1.09004 * 117.50034 * 0.02562 * 23 12 11 42 42 H 1.08999 * 117.49281 * 145.02207 * 23 12 11 43 43 H 1.09000 * 117.49760 * 252.50949 * 24 23 12 44 44 H 1.08993 * 117.49485 * 107.49592 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1226 -0.5585 1.2257 5 6 4.5472 -0.6042 1.3286 6 6 4.9420 -1.2184 2.6732 7 6 6.4443 -1.2659 2.7819 8 8 7.1316 -0.8541 1.8715 9 7 7.0240 -1.7707 3.8890 10 6 8.4845 -1.8225 3.9922 11 6 8.8793 -2.4355 5.3373 12 6 10.3989 -2.6041 5.3946 13 6 10.9506 -3.8542 4.7063 14 7 10.3096 -5.0449 5.2697 15 6 10.5794 -6.2807 4.7451 16 1 11.2651 -6.3776 3.9164 17 6 9.9716 -7.4090 5.2786 18 7 9.1364 -7.2909 6.2890 19 14 10.3402 -9.0949 4.5636 20 1 11.5017 -9.6899 5.2721 21 1 9.1549 -9.9735 4.7311 22 1 10.6572 -8.9613 3.1189 23 6 11.1169 -2.1156 6.6543 24 6 11.2527 -1.3354 5.3452 25 1 -1.0499 -0.0002 0.0001 26 1 3.0089 1.0238 -0.0978 27 1 3.0097 -0.5954 -0.8369 28 1 4.9491 0.4066 1.2585 29 1 4.9506 -1.2125 0.5192 30 1 4.5401 -2.2292 2.7428 31 1 4.5385 -0.6103 3.4828 32 1 6.4745 -2.0997 4.6173 33 1 8.8845 -2.4339 3.1832 34 1 8.8900 -0.8134 3.9195 35 1 8.5559 -1.7787 6.1448 36 1 8.4014 -3.4090 5.4472 37 1 10.7438 -3.8016 3.6374 38 1 12.0274 -3.9114 4.8657 39 1 9.6940 -4.9580 6.0143 40 1 8.7114 -8.0793 6.6616 41 1 10.5066 -1.6744 7.4424 42 1 11.9824 -2.6850 6.9930 43 1 12.2077 -1.3915 4.8227 44 1 10.7319 -0.3808 5.2720 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164501509.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:13 Heat of formation + Delta-G solvation = -0.940385 kcal Electronic energy + Delta-G solvation = -22473.039601 eV Core-core repulsion = 19007.105473 eV Total energy + Delta-G solvation = -3465.934128 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.85610 -38.46115 -38.11102 -34.84128 -33.94197 -33.78892 -31.90481 -30.79627 -29.75428 -27.29572 -25.98662 -24.36906 -22.87291 -22.65270 -21.73977 -20.49192 -18.86926 -18.45639 -17.49439 -17.08072 -16.71843 -16.11660 -15.99624 -15.61364 -15.24639 -15.03125 -14.53142 -14.37590 -13.80905 -13.54853 -13.21214 -13.06899 -12.89992 -12.67673 -12.34068 -11.93687 -11.88138 -11.74006 -11.42298 -11.13633 -10.94054 -10.88862 -10.84494 -10.77743 -10.60033 -10.16260 -9.93807 -9.90165 -9.88305 -9.64244 -9.33405 -9.00270 -8.84261 -6.90625 -5.76762 -3.04462 2.11393 2.44933 2.60530 3.05954 3.43704 3.49155 3.50532 3.68741 4.05009 4.22503 4.57026 4.61005 4.78672 4.88463 4.97341 5.02838 5.03825 5.09940 5.15471 5.27820 5.32773 5.51037 5.53820 5.56648 5.58577 5.60736 5.68634 5.76644 5.90070 6.15784 6.18831 6.20248 6.42176 6.44720 6.46256 6.60295 6.76224 6.77326 6.83247 7.20452 7.48998 7.70611 8.18897 8.42588 9.54182 10.12187 10.47828 11.46156 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012830 B = 0.002718 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.854523 B =10299.075458 C =11958.328635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.192 4.192 3 C 0.174 3.826 4 O -0.386 6.386 5 C 0.078 3.922 6 C -0.141 4.141 7 C 0.517 3.483 8 O -0.547 6.547 9 N -0.724 5.724 10 C 0.125 3.875 11 C -0.093 4.093 12 C -0.119 4.119 13 C 0.187 3.813 14 N -0.727 5.727 15 C -0.237 4.237 16 H 0.069 0.931 17 C -0.014 4.014 18 N -0.934 5.934 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.166 4.166 24 C -0.178 4.178 25 H 0.222 0.778 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.403 0.597 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.026 0.974 38 H 0.018 0.982 39 H 0.384 0.616 40 H 0.254 0.746 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.780 17.366 -6.305 21.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.192 4.192 3 C 0.098 3.902 4 O -0.306 6.306 5 C 0.002 3.998 6 C -0.181 4.181 7 C 0.303 3.697 8 O -0.425 6.425 9 N -0.375 5.375 10 C 0.002 3.998 11 C -0.130 4.130 12 C -0.119 4.119 13 C 0.060 3.940 14 N -0.372 5.372 15 C -0.368 4.368 16 H 0.087 0.913 17 C -0.210 4.210 18 N -0.583 5.583 19 Si 0.737 3.263 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.204 4.204 24 C -0.215 4.215 25 H 0.238 0.762 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.237 0.763 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.044 0.956 38 H 0.035 0.965 39 H 0.219 0.781 40 H 0.064 0.936 41 H 0.107 0.893 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.309 17.454 -6.924 21.421 hybrid contribution -0.280 -1.103 0.159 1.149 sum -10.589 16.351 -6.765 20.622 Atomic orbital electron populations 1.24980 0.95901 1.00341 0.98159 1.22585 0.93934 1.00850 1.01845 1.19051 0.84589 0.98828 0.87732 1.87870 1.21833 1.83575 1.37346 1.22166 0.79601 1.00982 0.97075 1.21469 0.92782 1.04682 0.99165 1.20296 0.89880 0.77383 0.82157 1.90710 1.65417 1.47824 1.38510 1.46018 1.08542 1.63341 1.19610 1.21364 0.78606 1.00946 0.98843 1.21272 0.94112 1.02279 0.95371 1.21571 0.92693 0.95792 1.01893 1.20177 0.94599 0.84220 0.95009 1.42305 1.53679 1.01136 1.40065 1.19235 1.21207 0.84241 1.12151 0.91263 1.24715 0.99822 0.97805 0.98667 1.69655 1.33242 1.28577 1.26803 0.86200 0.77164 0.84488 0.78427 1.21773 1.21795 1.20794 1.22997 1.03074 1.03287 0.90992 1.22963 1.01682 0.95218 1.01667 0.76151 0.90654 0.90563 0.92036 0.91867 0.87697 0.88004 0.76308 0.90894 0.91818 0.91987 0.89151 0.95643 0.96464 0.78144 0.93579 0.89309 0.88695 0.88943 0.89229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 19.25 29.55 0.57 -0.85 16 2 C -0.19 -1.85 13.73 -37.12 -0.51 -2.36 16 3 C 0.17 1.50 6.41 34.37 0.22 1.72 16 4 O -0.39 -4.13 10.30 -35.23 -0.36 -4.50 16 5 C 0.08 0.79 5.23 37.16 0.19 0.98 16 6 C -0.14 -1.36 6.07 -27.88 -0.17 -1.53 16 7 C 0.52 6.64 7.83 -10.99 -0.09 6.55 16 8 O -0.55 -8.98 15.98 5.56 0.09 -8.90 16 9 N -0.72 -8.81 5.56 -60.29 -0.33 -9.14 16 10 C 0.13 1.75 5.49 -4.04 -0.02 1.73 16 11 C -0.09 -1.33 5.20 -26.73 -0.14 -1.47 16 12 C -0.12 -1.87 1.65 -154.51 -0.25 -2.12 16 13 C 0.19 3.77 6.15 -4.04 -0.02 3.74 16 14 N -0.73 -18.05 5.23 -59.91 -0.31 -18.37 16 15 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 17 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 18 N -0.93 -27.85 13.06 55.49 0.72 -27.13 16 19 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 C -0.17 -2.38 9.87 -26.73 -0.26 -2.64 16 24 C -0.18 -2.33 9.57 -26.73 -0.26 -2.59 16 25 H 0.22 0.92 7.80 -54.10 -0.42 0.50 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 29 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 30 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.40 3.96 8.47 -40.82 -0.35 3.61 16 33 H 0.07 1.21 7.96 -51.92 -0.41 0.79 16 34 H 0.06 0.87 7.72 -51.93 -0.40 0.47 16 35 H 0.06 0.77 7.93 -51.93 -0.41 0.36 16 36 H 0.09 1.54 6.94 -51.93 -0.36 1.18 16 37 H 0.03 0.53 7.96 -51.93 -0.41 0.12 16 38 H 0.02 0.36 8.10 -51.93 -0.42 -0.06 16 39 H 0.38 9.93 6.80 -40.82 -0.28 9.66 16 40 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.09 1.14 8.07 -51.93 -0.42 0.72 16 42 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 43 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.09 1.04 7.90 -51.93 -0.41 0.63 16 LS Contribution 379.78 15.07 5.72 5.72 Total: -1.00 -33.57 379.78 -7.70 -41.27 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -7.22 Total: 9.71 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -0.99 Total: -6.09 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 0.08 Total: -54.64 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.27 Total: -13.39 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.57 -7.70 -41.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164501509.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.333 kcal (2) G-P(sol) polarization free energy of solvation -33.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds