Wall clock time and date at job start Tue Mar 31 2020 08:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42898 * 109.46850 * 294.52983 * 3 2 1 5 5 C 1.42904 * 113.99800 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.47257 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47016 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00275 * 359.72982 * 7 6 5 9 9 N 1.34774 * 119.99432 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99709 * 179.72525 * 9 7 6 11 11 C 1.53002 * 109.47205 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.47213 * 175.02174 * 11 10 9 13 13 C 1.52994 * 115.55143 * 278.03840 * 12 11 10 14 14 N 1.46500 * 109.46990 * 303.89478 * 13 12 11 15 15 C 1.36938 * 119.99934 * 175.59434 * 14 13 12 16 16 H 1.08001 * 120.00243 * 0.02562 * 15 14 13 17 17 C 1.38813 * 120.00102 * 180.02562 * 15 14 13 18 18 N 1.31619 * 119.99784 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00290 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47135 * 89.99717 * 19 17 15 21 21 H 1.48496 * 109.47032 * 210.00114 * 19 17 15 22 22 H 1.48499 * 109.46977 * 329.99895 * 19 17 15 23 23 C 1.53001 * 117.49660 * 132.32119 * 12 11 10 24 24 C 1.53000 * 60.00148 * 252.51677 * 23 12 11 25 25 H 4.38442 * 5.44384 * 180.02562 * 4 1 2 26 26 H 1.08999 * 109.46745 * 174.53935 * 3 2 1 27 27 H 1.08990 * 109.47336 * 54.53417 * 3 2 1 28 28 H 1.09002 * 109.46797 * 60.00653 * 5 4 3 29 29 H 1.08992 * 109.47198 * 300.00686 * 5 4 3 30 30 H 1.09002 * 109.46762 * 60.00536 * 6 5 4 31 31 H 1.08998 * 109.46828 * 300.00474 * 6 5 4 32 32 H 0.96993 * 120.00881 * 359.73034 * 9 7 6 33 33 H 1.09008 * 109.47334 * 300.00473 * 10 9 7 34 34 H 1.09000 * 109.47607 * 60.00361 * 10 9 7 35 35 H 1.08994 * 109.47321 * 295.02070 * 11 10 9 36 36 H 1.09000 * 109.46939 * 55.03004 * 11 10 9 37 37 H 1.08996 * 109.47468 * 63.89589 * 13 12 11 38 38 H 1.09007 * 109.47285 * 183.89754 * 13 12 11 39 39 H 0.96999 * 120.00164 * 355.59535 * 14 13 12 40 40 H 0.97005 * 120.00089 * 179.97438 * 18 17 15 41 41 H 1.09004 * 117.50034 * 0.02562 * 23 12 11 42 42 H 1.08999 * 117.49281 * 145.02207 * 23 12 11 43 43 H 1.09000 * 117.49760 * 252.50949 * 24 23 12 44 44 H 1.08993 * 117.49485 * 107.49592 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1226 -0.5585 1.2257 5 6 4.5472 -0.6042 1.3286 6 6 4.9420 -1.2184 2.6732 7 6 6.4443 -1.2659 2.7819 8 8 7.1316 -0.8541 1.8715 9 7 7.0240 -1.7707 3.8890 10 6 8.4845 -1.8225 3.9922 11 6 8.8793 -2.4355 5.3373 12 6 10.3989 -2.6041 5.3946 13 6 10.9506 -3.8542 4.7063 14 7 10.3096 -5.0449 5.2697 15 6 10.5794 -6.2807 4.7451 16 1 11.2651 -6.3776 3.9164 17 6 9.9716 -7.4090 5.2786 18 7 9.1364 -7.2909 6.2890 19 14 10.3402 -9.0949 4.5636 20 1 11.5017 -9.6899 5.2721 21 1 9.1549 -9.9735 4.7311 22 1 10.6572 -8.9613 3.1189 23 6 11.1169 -2.1156 6.6543 24 6 11.2527 -1.3354 5.3452 25 1 -1.0499 -0.0002 0.0001 26 1 3.0089 1.0238 -0.0978 27 1 3.0097 -0.5954 -0.8369 28 1 4.9491 0.4066 1.2585 29 1 4.9506 -1.2125 0.5192 30 1 4.5401 -2.2292 2.7428 31 1 4.5385 -0.6103 3.4828 32 1 6.4745 -2.0997 4.6173 33 1 8.8845 -2.4339 3.1832 34 1 8.8900 -0.8134 3.9195 35 1 8.5559 -1.7787 6.1448 36 1 8.4014 -3.4090 5.4472 37 1 10.7438 -3.8016 3.6374 38 1 12.0274 -3.9114 4.8657 39 1 9.6940 -4.9580 6.0143 40 1 8.7114 -8.0793 6.6616 41 1 10.5066 -1.6744 7.4424 42 1 11.9824 -2.6850 6.9930 43 1 12.2077 -1.3915 4.8227 44 1 10.7319 -0.3808 5.2720 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164501509.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:12 Heat of formation + Delta-G solvation = -23.442880 kcal Electronic energy + Delta-G solvation = -22474.015383 eV Core-core repulsion = 19007.105473 eV Total energy + Delta-G solvation = -3466.909910 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.90249 -39.58868 -39.00563 -36.10155 -35.73404 -34.45733 -32.80078 -32.74545 -30.83576 -28.03606 -27.74782 -25.37642 -24.61649 -23.83708 -22.86980 -21.51541 -19.95519 -19.39974 -19.02876 -18.33731 -17.50591 -17.13050 -16.94591 -16.76719 -16.55101 -16.15466 -15.87868 -15.59908 -15.19835 -14.91560 -14.55793 -14.41754 -14.05203 -13.90483 -13.59555 -13.14993 -12.99828 -12.79927 -12.72787 -12.52507 -12.48072 -12.27012 -12.11310 -11.93272 -11.83600 -11.55487 -11.46382 -11.11604 -11.01186 -10.89406 -10.58621 -10.52851 -10.08803 -8.96960 -7.94894 -5.22132 1.43181 1.46499 1.47431 1.55888 1.59095 1.81345 2.14646 2.54365 2.89327 2.99256 3.38315 3.59194 3.71302 3.84483 3.85209 3.99354 4.03566 4.10652 4.17704 4.28006 4.31894 4.41760 4.43761 4.48892 4.52351 4.67474 4.78818 4.82619 4.84889 4.95385 4.99700 5.02407 5.08643 5.20586 5.28420 5.34637 5.39529 5.45437 5.49424 6.05316 6.27849 6.52232 6.58822 7.20233 7.35065 8.11131 8.37138 9.28278 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012830 B = 0.002718 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.854523 B =10299.075458 C =11958.328635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.240 4.240 3 C 0.167 3.833 4 O -0.401 6.401 5 C 0.081 3.919 6 C -0.132 4.132 7 C 0.515 3.485 8 O -0.586 6.586 9 N -0.718 5.718 10 C 0.134 3.866 11 C -0.079 4.079 12 C -0.141 4.141 13 C 0.187 3.813 14 N -0.735 5.735 15 C -0.246 4.246 16 H 0.069 0.931 17 C -0.072 4.072 18 N -0.965 5.965 19 Si 0.969 3.031 20 H -0.287 1.287 21 H -0.293 1.293 22 H -0.274 1.274 23 C -0.164 4.164 24 C -0.151 4.151 25 H 0.254 0.746 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.415 0.585 33 H 0.040 0.960 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.016 0.984 38 H 0.013 0.987 39 H 0.377 0.623 40 H 0.251 0.749 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.096 0.904 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.521 18.571 -6.150 22.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.240 4.240 3 C 0.092 3.908 4 O -0.321 6.321 5 C 0.004 3.996 6 C -0.172 4.172 7 C 0.303 3.697 8 O -0.467 6.467 9 N -0.370 5.370 10 C 0.010 3.990 11 C -0.117 4.117 12 C -0.142 4.142 13 C 0.061 3.939 14 N -0.378 5.378 15 C -0.377 4.377 16 H 0.087 0.913 17 C -0.264 4.264 18 N -0.615 5.615 19 Si 0.798 3.202 20 H -0.214 1.214 21 H -0.220 1.220 22 H -0.199 1.199 23 C -0.201 4.201 24 C -0.188 4.188 25 H 0.270 0.730 26 H 0.108 0.892 27 H 0.103 0.897 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.132 0.868 31 H 0.144 0.856 32 H 0.252 0.748 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.034 0.966 38 H 0.031 0.969 39 H 0.210 0.790 40 H 0.060 0.940 41 H 0.127 0.873 42 H 0.100 0.900 43 H 0.114 0.886 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.041 18.675 -6.769 22.727 hybrid contribution -0.047 -1.433 0.076 1.436 sum -11.088 17.242 -6.693 21.565 Atomic orbital electron populations 1.25869 0.96823 0.98719 0.96397 1.23097 0.94879 1.02467 1.03528 1.19238 0.84601 0.99760 0.87248 1.87830 1.21841 1.83935 1.38481 1.22108 0.79538 1.00953 0.96996 1.21433 0.90210 1.05700 0.99851 1.20824 0.91074 0.76353 0.81440 1.90692 1.66559 1.49616 1.39827 1.45966 1.08013 1.62947 1.20035 1.21161 0.79654 1.00645 0.97493 1.21117 0.92962 1.01204 0.96381 1.21418 0.93805 0.95392 1.03590 1.20230 0.94114 0.84815 0.94746 1.42443 1.53757 1.01760 1.39848 1.19590 1.20592 0.85706 1.11860 0.91274 1.25479 1.00252 1.01236 0.99448 1.69794 1.34429 1.29167 1.28132 0.85205 0.76725 0.80168 0.78061 1.21422 1.21972 1.19888 1.23059 1.02487 1.03110 0.91468 1.23049 1.01096 0.94659 1.00034 0.73001 0.89223 0.89707 0.91866 0.92776 0.86787 0.85630 0.74828 0.94144 0.90847 0.89166 0.92205 0.96638 0.96877 0.78970 0.93976 0.87325 0.89961 0.88562 0.86769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 19.25 74.32 1.43 -0.89 16 2 C -0.24 -4.44 13.73 31.13 0.43 -4.01 16 3 C 0.17 2.81 6.41 70.18 0.45 3.26 16 4 O -0.40 -8.30 10.30 -148.98 -1.53 -9.83 16 5 C 0.08 1.58 5.23 71.98 0.38 1.95 16 6 C -0.13 -2.38 6.07 29.85 0.18 -2.20 16 7 C 0.52 12.88 7.83 87.66 0.69 13.56 16 8 O -0.59 -19.28 15.98 -3.02 -0.05 -19.33 16 9 N -0.72 -16.79 5.56 -463.06 -2.57 -19.37 16 10 C 0.13 3.67 5.49 86.38 0.47 4.14 16 11 C -0.08 -2.19 5.20 30.60 0.16 -2.03 16 12 C -0.14 -4.32 1.65 -52.18 -0.09 -4.41 16 13 C 0.19 7.63 6.15 86.38 0.53 8.16 16 14 N -0.74 -37.18 5.23 -343.46 -1.80 -38.98 16 15 C -0.25 -13.86 9.99 84.03 0.84 -13.02 16 16 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 17 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 18 N -0.96 -58.30 13.06 21.65 0.28 -58.02 16 19 Si 0.97 46.46 29.55 68.60 2.03 48.49 16 20 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 21 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 22 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 23 C -0.16 -4.37 9.87 30.59 0.30 -4.07 16 24 C -0.15 -3.58 9.57 30.60 0.29 -3.28 16 25 H 0.25 1.42 7.80 -4.42 -0.03 1.39 16 26 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 29 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 30 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.42 7.59 8.47 -92.71 -0.79 6.81 16 33 H 0.04 1.37 7.96 -2.38 -0.02 1.35 16 34 H 0.07 1.88 7.72 -2.39 -0.02 1.86 16 35 H 0.09 2.00 7.93 -2.39 -0.02 1.98 16 36 H 0.06 2.05 6.94 -2.39 -0.02 2.03 16 37 H 0.02 0.67 7.96 -2.39 -0.02 0.65 16 38 H 0.01 0.55 8.10 -2.38 -0.02 0.53 16 39 H 0.38 19.95 6.80 -92.71 -0.63 19.32 16 40 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16 41 H 0.11 2.47 8.07 -2.38 -0.02 2.45 16 42 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.11 2.20 7.90 -2.39 -0.02 2.18 16 Total: -1.00 -72.96 379.78 2.46 -70.50 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: -0.43 Total: 33.02 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: 6.53 Total: -6.49 kcal Atomic # 7 Polarization: -112.28 SS G_CDS: -4.09 Total: -116.36 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -1.58 Total: -29.16 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -72.96 2.46 -70.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164501509.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.059 kcal (2) G-P(sol) polarization free energy of solvation -72.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds