Wall clock time and date at job start Tue Mar 31 2020 06:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46944 * 2 1 4 4 H 1.08999 * 109.46970 * 304.98983 * 3 2 1 5 5 C 1.50705 * 109.47146 * 184.99766 * 3 2 1 6 6 H 1.07996 * 119.99684 * 240.00229 * 5 3 2 7 7 C 1.37874 * 119.99868 * 59.99534 * 5 3 2 8 8 N 1.31519 * 120.00366 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99720 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47314 * 60.00177 * 9 7 5 11 11 H 1.48508 * 109.47059 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47146 * 300.00141 * 9 7 5 13 13 N 1.46495 * 109.47341 * 64.99625 * 3 2 1 14 14 C 1.34774 * 120.00217 * 275.00216 * 13 3 2 15 15 O 1.21556 * 119.99664 * 359.97438 * 14 13 3 16 16 C 1.47592 * 120.00474 * 180.02562 * 14 13 3 17 17 N 1.29102 * 125.86095 * 359.96780 * 16 14 13 18 18 O 1.41574 * 112.88377 * 179.74720 * 17 16 14 19 19 C 1.43466 * 107.44919 * 16.82435 * 18 17 16 20 20 C 1.51835 * 125.86727 * 179.97438 * 16 14 13 21 21 C 1.52200 * 110.94218 * 217.45724 * 19 18 17 22 22 C 1.53130 * 109.61403 * 294.06383 * 21 19 18 23 23 C 1.53010 * 109.40850 * 301.21198 * 22 21 19 24 24 C 1.53038 * 109.53476 * 60.59096 * 23 22 21 25 25 C 1.52205 * 110.91855 * 93.26380 * 19 18 17 26 26 H 1.09004 * 109.46887 * 60.00794 * 1 2 3 27 27 H 1.09005 * 109.46876 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47849 * 300.00158 * 1 2 3 29 29 H 1.09000 * 109.47758 * 239.99517 * 2 1 3 30 30 H 1.09004 * 109.46887 * 119.99206 * 2 1 3 31 31 H 0.96996 * 119.99585 * 179.97438 * 8 7 5 32 32 H 0.97005 * 120.00170 * 95.00021 * 13 3 2 33 33 H 1.09002 * 110.81788 * 46.91680 * 20 16 14 34 34 H 1.08994 * 110.81958 * 283.36629 * 20 16 14 35 35 H 1.08992 * 109.44555 * 174.02015 * 21 19 18 36 36 H 1.08997 * 109.44687 * 54.10726 * 21 19 18 37 37 H 1.09002 * 109.48509 * 61.20018 * 22 21 19 38 38 H 1.08999 * 109.48371 * 181.23033 * 22 21 19 39 39 H 1.09002 * 109.45419 * 180.62190 * 23 22 21 40 40 H 1.08996 * 109.45919 * 300.57332 * 23 22 21 41 41 H 1.09003 * 109.48312 * 179.42634 * 24 23 22 42 42 H 1.09000 * 109.49862 * 59.38547 * 24 23 22 43 43 H 1.09003 * 109.44453 * 185.97720 * 25 19 18 44 44 H 1.08997 * 109.44794 * 305.91710 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1470 1.8890 0.6524 7 6 4.1433 0.8784 -1.2278 8 7 3.4062 0.3373 -2.1732 9 14 6.0050 0.8801 -1.3809 10 1 6.5966 0.1454 -0.2339 11 1 6.3979 0.2167 -2.6501 12 1 6.5004 2.2800 -1.3806 13 7 1.6523 2.0976 1.2517 14 6 0.4350 2.6644 1.3668 15 8 -0.3411 2.6326 0.4318 16 6 0.0446 3.3249 2.6277 17 7 0.7758 3.4250 3.6869 18 8 0.1301 4.1197 4.7380 19 6 -1.2721 4.1501 4.4359 20 6 -1.2859 4.0031 2.9019 21 6 -1.8886 5.4791 4.8484 22 6 -1.8400 5.6173 6.3726 23 6 -2.6006 4.4544 7.0132 24 6 -1.9446 3.1312 6.6120 25 6 -1.9942 2.9803 5.0890 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5137 0.8901 31 1 3.8294 -0.0605 -2.9501 32 1 2.2718 2.1233 1.9978 33 1 -2.1153 3.3730 2.5806 34 1 -1.3298 4.9793 2.4192 35 1 -2.9251 5.5178 4.5134 36 1 -1.3295 6.2958 4.3919 37 1 -0.8024 5.6009 6.7063 38 1 -2.3017 6.5598 6.6671 39 1 -2.5758 4.5580 8.0980 40 1 -3.6354 4.4651 6.6712 41 1 -2.4809 2.3039 7.0769 42 1 -0.9066 3.1242 6.9444 43 1 -3.0331 2.9654 4.7594 44 1 -1.5088 2.0478 4.8011 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184696867.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:15 Heat of formation + Delta-G solvation = -40.889374 kcal Electronic energy + Delta-G solvation = -24424.033041 eV Core-core repulsion = 20956.366595 eV Total energy + Delta-G solvation = -3467.666446 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.01918 -39.05073 -37.08642 -35.21083 -33.10164 -32.34454 -31.61043 -31.13631 -30.78736 -27.18386 -26.59190 -24.08589 -23.09066 -22.70544 -21.69971 -20.49522 -19.67523 -19.09081 -17.15289 -16.32582 -16.22213 -15.59427 -15.43246 -15.24902 -14.67727 -14.49379 -14.39690 -14.00730 -13.96013 -13.31679 -12.84183 -12.77329 -12.62842 -12.47451 -12.32895 -11.98505 -11.95103 -11.58902 -11.34584 -11.30282 -11.05065 -10.92674 -10.85728 -10.73401 -10.58807 -10.43065 -10.39351 -10.25271 -9.73921 -9.46868 -9.44395 -9.12972 -8.55408 -8.00136 -6.16509 -4.26205 1.24799 2.93464 3.25534 3.30372 3.32107 3.57245 3.61870 4.17652 4.28560 4.31937 4.35964 4.52018 4.78181 4.87452 4.93386 5.03182 5.10940 5.15433 5.20790 5.34934 5.42308 5.48135 5.51658 5.68191 5.71969 5.82745 5.85562 5.92312 5.97161 6.03496 6.19700 6.32217 6.37699 6.56874 6.96222 7.05801 7.16886 7.24640 7.29459 7.54913 7.66155 7.81379 8.09605 8.47430 8.65276 8.89275 9.40625 10.88888 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028794 B = 0.003435 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.183982 B = 8150.297332 C = 8542.312325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.269 3.731 4 H 0.054 0.946 5 C -0.537 4.537 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.903 3.097 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.680 5.680 14 C 0.568 3.432 15 O -0.527 6.527 16 C 0.060 3.940 17 N -0.253 5.253 18 O -0.180 6.180 19 C 0.072 3.928 20 C -0.127 4.127 21 C -0.105 4.105 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.117 4.117 25 C -0.127 4.127 26 H 0.051 0.949 27 H 0.026 0.974 28 H 0.035 0.965 29 H 0.103 0.897 30 H 0.034 0.966 31 H 0.266 0.734 32 H 0.398 0.602 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.811 7.041 14.751 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.168 3.832 4 H 0.072 0.928 5 C -0.576 4.576 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.328 5.328 14 C 0.350 3.650 15 O -0.403 6.403 16 C -0.135 4.135 17 N 0.002 4.998 18 O -0.201 6.201 19 C 0.031 3.969 20 C -0.167 4.167 21 C -0.144 4.144 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.154 4.154 25 C -0.164 4.164 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.121 0.879 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.231 0.769 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.282 6.747 14.471 19.550 hybrid contribution 0.447 0.143 -0.063 0.474 sum -10.835 6.891 14.407 19.299 Atomic orbital electron populations 1.21857 0.98327 0.98347 1.01102 1.21961 0.92629 0.99488 1.02682 1.18963 0.94672 0.89350 0.80245 0.92799 1.21176 0.90399 1.39438 1.06547 0.91892 1.24867 0.98783 0.94615 0.95249 1.69876 1.35335 1.37413 1.09315 0.86478 0.84591 0.78413 0.77479 1.20059 1.21097 1.20109 1.46567 1.13546 1.53524 1.19187 1.16955 0.83794 0.79976 0.84321 1.90810 1.51558 1.59826 1.38082 1.26515 0.95895 0.96524 0.94569 1.78520 1.19235 1.05385 0.96651 1.91169 1.17494 1.73591 1.37812 1.22506 0.84026 0.97409 0.92927 1.22886 0.96312 1.02738 0.94748 1.21492 1.01056 0.94549 0.97274 1.21528 1.01533 0.98243 0.94289 1.21556 0.99264 0.94694 1.00191 1.21492 1.01834 0.97339 0.94739 1.21800 1.00713 0.97370 0.96550 0.92950 0.95538 0.94553 0.87902 0.94754 0.92402 0.76856 0.87253 0.87543 0.90105 0.90755 0.91117 0.91672 0.91882 0.92040 0.91776 0.91126 0.90362 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.51 37.15 0.32 -2.68 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.21 16 3 C 0.27 6.64 2.24 -69.08 -0.15 6.49 16 4 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 5 C -0.54 -14.08 8.73 -34.44 -0.30 -14.38 16 6 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.23 11.30 55.43 0.63 -23.60 16 9 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 N -0.68 -14.37 5.02 -55.96 -0.28 -14.65 16 14 C 0.57 11.27 6.39 -12.45 -0.08 11.19 16 15 O -0.53 -11.63 14.09 5.32 0.07 -11.55 16 16 C 0.06 0.99 7.29 -79.36 -0.58 0.41 16 17 N -0.25 -4.18 12.16 35.33 0.43 -3.75 16 18 O -0.18 -2.65 11.28 -11.46 -0.13 -2.78 16 19 C 0.07 0.82 0.75 -90.85 -0.07 0.75 16 20 C -0.13 -1.61 5.97 -26.74 -0.16 -1.77 16 21 C -0.11 -0.95 4.88 -27.07 -0.13 -1.08 16 22 C -0.12 -0.98 5.85 -26.66 -0.16 -1.13 16 23 C -0.12 -0.92 5.90 -26.71 -0.16 -1.08 16 24 C -0.12 -1.07 5.85 -26.65 -0.16 -1.23 16 25 C -0.13 -1.31 4.88 -27.07 -0.13 -1.44 16 26 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.04 0.76 5.64 -51.93 -0.29 0.46 16 29 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.40 7.85 8.22 -40.82 -0.34 7.52 16 33 H 0.11 1.28 7.88 -51.93 -0.41 0.87 16 34 H 0.11 1.23 7.88 -51.93 -0.41 0.82 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.68 7.95 -51.93 -0.41 0.27 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.75 7.95 -51.93 -0.41 0.34 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 347.04 15.07 5.23 5.23 Total: -1.00 -28.45 347.04 -8.22 -36.67 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -7.15 Total: 6.40 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -2.00 Total: -7.45 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.77 Total: -42.00 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.05 Total: -14.33 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.45 -8.22 -36.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184696867.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.219 kcal (2) G-P(sol) polarization free energy of solvation -28.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds