Wall clock time and date at job start Tue Mar 31 2020 06:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46944 * 2 1 4 4 H 1.08999 * 109.46970 * 304.98983 * 3 2 1 5 5 C 1.50705 * 109.47146 * 184.99766 * 3 2 1 6 6 H 1.07996 * 119.99684 * 240.00229 * 5 3 2 7 7 C 1.37874 * 119.99868 * 59.99534 * 5 3 2 8 8 N 1.31519 * 120.00366 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99720 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47314 * 60.00177 * 9 7 5 11 11 H 1.48508 * 109.47059 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47146 * 300.00141 * 9 7 5 13 13 N 1.46495 * 109.47341 * 64.99625 * 3 2 1 14 14 C 1.34774 * 120.00217 * 275.00216 * 13 3 2 15 15 O 1.21556 * 119.99664 * 359.97438 * 14 13 3 16 16 C 1.47592 * 120.00474 * 180.02562 * 14 13 3 17 17 N 1.29102 * 125.86095 * 359.96780 * 16 14 13 18 18 O 1.41574 * 112.88377 * 179.74720 * 17 16 14 19 19 C 1.43466 * 107.44919 * 16.82435 * 18 17 16 20 20 C 1.51835 * 125.86727 * 179.97438 * 16 14 13 21 21 C 1.52200 * 110.94218 * 217.45724 * 19 18 17 22 22 C 1.53130 * 109.61403 * 294.06383 * 21 19 18 23 23 C 1.53010 * 109.40850 * 301.21198 * 22 21 19 24 24 C 1.53038 * 109.53476 * 60.59096 * 23 22 21 25 25 C 1.52205 * 110.91855 * 93.26380 * 19 18 17 26 26 H 1.09004 * 109.46887 * 60.00794 * 1 2 3 27 27 H 1.09005 * 109.46876 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47849 * 300.00158 * 1 2 3 29 29 H 1.09000 * 109.47758 * 239.99517 * 2 1 3 30 30 H 1.09004 * 109.46887 * 119.99206 * 2 1 3 31 31 H 0.96996 * 119.99585 * 179.97438 * 8 7 5 32 32 H 0.97005 * 120.00170 * 95.00021 * 13 3 2 33 33 H 1.09002 * 110.81788 * 46.91680 * 20 16 14 34 34 H 1.08994 * 110.81958 * 283.36629 * 20 16 14 35 35 H 1.08992 * 109.44555 * 174.02015 * 21 19 18 36 36 H 1.08997 * 109.44687 * 54.10726 * 21 19 18 37 37 H 1.09002 * 109.48509 * 61.20018 * 22 21 19 38 38 H 1.08999 * 109.48371 * 181.23033 * 22 21 19 39 39 H 1.09002 * 109.45419 * 180.62190 * 23 22 21 40 40 H 1.08996 * 109.45919 * 300.57332 * 23 22 21 41 41 H 1.09003 * 109.48312 * 179.42634 * 24 23 22 42 42 H 1.09000 * 109.49862 * 59.38547 * 24 23 22 43 43 H 1.09003 * 109.44453 * 185.97720 * 25 19 18 44 44 H 1.08997 * 109.44794 * 305.91710 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1470 1.8890 0.6524 7 6 4.1433 0.8784 -1.2278 8 7 3.4062 0.3373 -2.1732 9 14 6.0050 0.8801 -1.3809 10 1 6.5966 0.1454 -0.2339 11 1 6.3979 0.2167 -2.6501 12 1 6.5004 2.2800 -1.3806 13 7 1.6523 2.0976 1.2517 14 6 0.4350 2.6644 1.3668 15 8 -0.3411 2.6326 0.4318 16 6 0.0446 3.3249 2.6277 17 7 0.7758 3.4250 3.6869 18 8 0.1301 4.1197 4.7380 19 6 -1.2721 4.1501 4.4359 20 6 -1.2859 4.0031 2.9019 21 6 -1.8886 5.4791 4.8484 22 6 -1.8400 5.6173 6.3726 23 6 -2.6006 4.4544 7.0132 24 6 -1.9446 3.1312 6.6120 25 6 -1.9942 2.9803 5.0890 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5137 0.8901 31 1 3.8294 -0.0605 -2.9501 32 1 2.2718 2.1233 1.9978 33 1 -2.1153 3.3730 2.5806 34 1 -1.3298 4.9793 2.4192 35 1 -2.9251 5.5178 4.5134 36 1 -1.3295 6.2958 4.3919 37 1 -0.8024 5.6009 6.7063 38 1 -2.3017 6.5598 6.6671 39 1 -2.5758 4.5580 8.0980 40 1 -3.6354 4.4651 6.6712 41 1 -2.4809 2.3039 7.0769 42 1 -0.9066 3.1242 6.9444 43 1 -3.0331 2.9654 4.7594 44 1 -1.5088 2.0478 4.8011 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184696867.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:14 Heat of formation + Delta-G solvation = -57.747830 kcal Electronic energy + Delta-G solvation = -24424.764079 eV Core-core repulsion = 20956.366595 eV Total energy + Delta-G solvation = -3468.397484 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.12242 -40.64267 -37.99081 -37.06392 -34.60722 -34.01350 -32.81036 -32.33328 -31.82520 -29.09621 -27.52985 -25.77583 -24.43801 -23.80565 -22.56584 -21.84839 -21.31397 -20.48217 -18.64370 -17.73480 -17.60053 -17.03944 -16.85175 -16.44280 -16.21051 -15.94445 -15.37045 -15.05061 -14.93180 -14.71417 -14.62365 -14.00387 -13.76742 -13.56631 -13.46461 -13.19030 -13.16742 -13.01049 -12.96409 -12.80890 -12.67819 -12.23511 -12.13593 -12.09123 -11.97470 -11.63600 -11.46156 -11.38058 -11.24252 -11.12127 -11.09510 -10.56267 -10.51296 -9.81894 -8.19106 -6.36378 -0.10358 1.44670 1.45984 1.53634 1.67921 2.02557 2.25244 2.44831 3.10360 3.15902 3.34755 3.43247 3.57031 3.76438 4.10018 4.16031 4.25859 4.33273 4.38675 4.47545 4.50853 4.54407 4.59975 4.62955 4.67216 4.71953 4.85817 4.99553 5.02445 5.03349 5.20566 5.22094 5.22436 5.31769 5.33594 5.37637 5.40238 5.53391 5.55395 5.71474 5.80395 6.06193 6.11183 6.66482 6.73826 7.14108 7.36355 8.86007 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028794 B = 0.003435 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.183982 B = 8150.297332 C = 8542.312325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.123 4.123 3 C 0.277 3.723 4 H 0.013 0.987 5 C -0.555 4.555 6 H 0.067 0.933 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.968 3.032 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.684 5.684 14 C 0.571 3.429 15 O -0.551 6.551 16 C 0.052 3.948 17 N -0.266 5.266 18 O -0.184 6.184 19 C 0.070 3.930 20 C -0.124 4.124 21 C -0.104 4.104 22 C -0.118 4.118 23 C -0.116 4.116 24 C -0.116 4.116 25 C -0.127 4.127 26 H 0.034 0.966 27 H 0.049 0.951 28 H 0.040 0.960 29 H 0.078 0.922 30 H 0.038 0.962 31 H 0.267 0.733 32 H 0.404 0.596 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.106 0.894 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.049 0.951 43 H 0.101 0.899 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.816 7.800 16.408 22.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 C 0.175 3.825 4 H 0.031 0.969 5 C -0.593 4.593 6 H 0.085 0.915 7 C -0.179 4.179 8 N -0.548 5.548 9 Si 0.793 3.207 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.198 1.198 13 N -0.332 5.332 14 C 0.355 3.645 15 O -0.428 6.428 16 C -0.142 4.142 17 N -0.009 5.009 18 O -0.207 6.207 19 C 0.030 3.970 20 C -0.163 4.163 21 C -0.142 4.142 22 C -0.155 4.155 23 C -0.153 4.153 24 C -0.154 4.154 25 C -0.165 4.165 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.239 0.761 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.124 0.876 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.119 0.881 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.291 7.512 16.148 21.639 hybrid contribution 0.720 -0.061 -0.527 0.894 sum -11.571 7.451 15.621 20.818 Atomic orbital electron populations 1.21704 0.96589 0.99634 1.00408 1.21813 0.94124 0.98638 1.01592 1.18578 0.93974 0.89531 0.80446 0.96946 1.21499 0.91310 1.39606 1.06934 0.91507 1.25685 1.03211 0.94146 0.94862 1.70008 1.37094 1.37930 1.09736 0.85456 0.79177 0.78450 0.77620 1.19188 1.20789 1.19779 1.46363 1.14506 1.54062 1.18286 1.17252 0.82837 0.79209 0.85244 1.90792 1.52056 1.60514 1.39421 1.26124 0.97912 0.97135 0.93068 1.78472 1.20192 1.05182 0.97075 1.91154 1.19633 1.72997 1.36899 1.22830 0.82496 0.99514 0.92130 1.23010 0.94493 1.03081 0.95754 1.21572 1.02155 0.92657 0.97842 1.21536 1.00741 0.99542 0.93717 1.21551 0.99748 0.93224 1.00792 1.21493 1.00991 0.98965 0.93903 1.21843 1.01543 0.95761 0.97336 0.94689 0.93189 0.94088 0.90336 0.94278 0.92348 0.76081 0.86140 0.86262 0.87565 0.90946 0.93043 0.89734 0.90976 0.90383 0.90644 0.93227 0.88057 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.46 8.51 71.98 0.61 -4.85 16 2 C -0.12 -5.96 5.45 30.59 0.17 -5.79 16 3 C 0.28 14.12 2.24 44.25 0.10 14.22 16 4 H 0.01 0.74 7.58 -2.39 -0.02 0.73 16 5 C -0.56 -29.61 8.73 25.60 0.22 -29.38 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 7 C 0.02 1.17 5.29 84.65 0.45 1.62 16 8 N -0.91 -51.03 11.30 21.45 0.24 -50.79 16 9 Si 0.97 42.13 29.54 68.60 2.03 44.16 16 10 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 12 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 13 N -0.68 -29.48 5.02 -449.25 -2.25 -31.73 16 14 C 0.57 22.94 6.39 86.71 0.55 23.49 16 15 O -0.55 -24.70 14.09 -3.89 -0.05 -24.75 16 16 C 0.05 1.69 7.29 45.79 0.33 2.03 16 17 N -0.27 -8.70 12.16 -42.15 -0.51 -9.21 16 18 O -0.18 -5.26 11.28 -38.73 -0.44 -5.70 16 19 C 0.07 1.48 0.75 -10.94 -0.01 1.47 16 20 C -0.12 -2.95 5.97 30.59 0.18 -2.76 16 21 C -0.10 -1.57 4.88 30.37 0.15 -1.42 16 22 C -0.12 -1.63 5.85 30.64 0.18 -1.45 16 23 C -0.12 -1.43 5.90 30.61 0.18 -1.25 16 24 C -0.12 -1.91 5.85 30.65 0.18 -1.73 16 25 C -0.13 -2.38 4.88 30.37 0.15 -2.23 16 26 H 0.03 1.61 7.84 -2.39 -0.02 1.59 16 27 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.04 1.71 5.64 -2.39 -0.01 1.69 16 29 H 0.08 4.23 5.95 -2.39 -0.01 4.21 16 30 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 32 H 0.40 16.24 8.22 -92.70 -0.76 15.48 16 33 H 0.12 2.59 7.88 -2.39 -0.02 2.57 16 34 H 0.12 2.52 7.88 -2.39 -0.02 2.50 16 35 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.05 0.91 7.95 -2.39 -0.02 0.89 16 38 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.05 1.01 7.95 -2.39 -0.02 1.00 16 43 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -62.34 347.04 2.69 -59.65 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.23 Total: 26.43 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 3.45 Total: -8.05 kcal Atomic # 7 Polarization: -89.21 SS G_CDS: -2.52 Total: -91.74 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.49 Total: -30.45 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -62.34 2.69 -59.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184696867.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.903 kcal (2) G-P(sol) polarization free energy of solvation -62.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds