Wall clock time and date at job start Tue Mar 31 2020 08:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 O 1.42907 * 109.47275 * 357.51717 * 3 2 1 5 5 C 1.42906 * 113.99970 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.46934 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.46931 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99808 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00023 * 180.02562 * 7 6 5 10 10 C 1.46919 * 120.63255 * 179.97438 * 9 7 6 11 11 C 1.53195 * 108.89273 * 126.34238 * 10 9 7 12 12 C 1.53346 * 109.14901 * 54.57640 * 11 10 9 13 13 C 1.53004 * 109.41904 * 178.67276 * 12 11 10 14 14 N 1.46500 * 109.47150 * 295.13157 * 13 12 11 15 15 C 1.36934 * 119.99724 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00570 * 359.97438 * 15 14 13 17 17 C 1.38817 * 119.99789 * 179.97438 * 15 14 13 18 18 N 1.31618 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99915 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47150 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46998 * 120.00159 * 19 17 15 22 22 H 1.48507 * 109.47070 * 240.00019 * 19 17 15 23 23 C 1.53034 * 109.61010 * 298.71225 * 12 11 10 24 24 C 1.46933 * 120.62741 * 0.02562 * 9 7 6 25 25 H 4.38449 * 5.44330 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.47208 * 237.51694 * 3 2 1 27 27 H 1.09007 * 109.47450 * 117.51567 * 3 2 1 28 28 H 1.08996 * 109.47067 * 60.00175 * 5 4 3 29 29 H 1.09001 * 109.47330 * 300.00061 * 5 4 3 30 30 H 1.09001 * 109.46646 * 60.00037 * 6 5 4 31 31 H 1.09001 * 109.47188 * 300.00180 * 6 5 4 32 32 H 1.09002 * 109.58751 * 246.20189 * 10 9 7 33 33 H 1.08996 * 109.58750 * 6.48373 * 10 9 7 34 34 H 1.08997 * 109.49914 * 174.65962 * 11 10 9 35 35 H 1.09002 * 109.49585 * 294.75599 * 11 10 9 36 36 H 1.09001 * 109.42242 * 58.75065 * 12 11 10 37 37 H 1.09001 * 109.46592 * 55.13132 * 13 12 11 38 38 H 1.08997 * 109.47133 * 175.12697 * 13 12 11 39 39 H 0.96999 * 119.99704 * 359.97438 * 14 13 12 40 40 H 0.97003 * 120.00052 * 179.97438 * 18 17 15 41 41 H 1.08994 * 109.50232 * 301.42239 * 23 12 11 42 42 H 1.09007 * 109.52628 * 181.33900 * 23 12 11 43 43 H 1.08994 * 109.58580 * 353.38021 * 24 9 7 44 44 H 1.09006 * 109.57831 * 113.65514 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1230 -1.3452 0.0584 5 6 4.5476 -1.4573 0.0627 6 6 4.9428 -2.9340 0.1274 7 6 6.4451 -3.0521 0.1326 8 8 7.1320 -2.0536 0.0893 9 7 7.0253 -4.2675 0.1853 10 6 8.4886 -4.3988 0.1905 11 6 8.9063 -5.2470 1.3959 12 6 8.1525 -6.5819 1.3571 13 6 8.5897 -7.4476 2.5405 14 7 10.0058 -7.7939 2.3953 15 6 10.6218 -8.5680 3.3421 16 1 10.0640 -8.9227 4.1961 17 6 11.9634 -8.8966 3.2043 18 7 12.6432 -8.4647 2.1633 19 14 12.8037 -9.9530 4.4956 20 1 11.8276 -10.3069 5.5573 21 1 13.3180 -11.1936 3.8619 22 1 13.9335 -9.1979 5.0943 23 6 6.6465 -6.3240 1.4430 24 6 6.2064 -5.4863 0.2376 25 1 -1.0498 -0.0003 0.0002 26 1 3.0091 0.5527 0.8669 27 1 3.0092 0.4756 -0.9115 28 1 4.9505 -0.9354 0.9306 29 1 4.9498 -1.0127 -0.8477 30 1 4.5398 -3.4562 -0.7403 31 1 4.5406 -3.3781 1.0379 32 1 8.8152 -4.8847 -0.7289 33 1 8.9439 -3.4112 0.2634 34 1 9.9800 -5.4304 1.3573 35 1 8.6601 -4.7174 2.3163 36 1 8.3797 -7.0994 0.4251 37 1 8.4442 -6.8946 3.4685 38 1 7.9931 -8.3595 2.5636 39 1 10.5069 -7.4750 1.6285 40 1 13.5808 -8.6940 2.0672 41 1 6.4216 -5.7844 2.3629 42 1 6.1132 -7.2747 1.4392 43 1 5.1558 -5.2163 0.3440 44 1 6.3453 -6.0593 -0.6792 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205258393.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:04 Heat of formation + Delta-G solvation = -23.390250 kcal Electronic energy + Delta-G solvation = -22923.600615 eV Core-core repulsion = 19456.692988 eV Total energy + Delta-G solvation = -3466.907627 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.34780 -38.52499 -37.66912 -34.97724 -33.87279 -32.91407 -32.05131 -30.81347 -30.27626 -27.46934 -26.64550 -24.34031 -23.78160 -22.64893 -21.74767 -20.18096 -19.12557 -18.63812 -17.74393 -17.03628 -16.77543 -16.37123 -15.81395 -15.51798 -15.20831 -14.77436 -14.33222 -14.13053 -13.83849 -13.68224 -13.45714 -13.12335 -13.02607 -12.83823 -12.41857 -12.18540 -12.02258 -11.80067 -11.73257 -11.18643 -10.99988 -10.93407 -10.85102 -10.83625 -10.47996 -10.37340 -10.18415 -9.96166 -9.94258 -9.89389 -9.64161 -8.87705 -8.66184 -6.91421 -5.76919 -3.05076 2.05521 2.39684 2.49713 2.85438 3.43136 3.48823 3.51024 3.53673 4.10422 4.40282 4.58013 4.68830 4.71310 4.81033 4.86883 4.96791 4.98276 5.05771 5.15394 5.24306 5.37396 5.42432 5.47934 5.49531 5.51790 5.56592 5.62090 5.79318 5.92197 5.98364 6.09927 6.15616 6.28260 6.36811 6.49005 6.67799 6.70679 6.79481 6.90963 7.15207 7.31643 7.70564 8.04078 8.42329 9.53545 10.11841 10.46332 11.46082 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.040034 B = 0.002227 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.241491 B =12568.963173 C =12874.174617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.193 4.193 3 C 0.174 3.826 4 O -0.387 6.387 5 C 0.078 3.922 6 C -0.139 4.139 7 C 0.519 3.481 8 O -0.548 6.548 9 N -0.606 5.606 10 C 0.110 3.890 11 C -0.123 4.123 12 C -0.095 4.095 13 C 0.158 3.842 14 N -0.732 5.732 15 C -0.238 4.238 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.933 5.933 19 Si 0.906 3.094 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.127 4.127 24 C 0.105 3.895 25 H 0.222 0.778 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.017 0.983 38 H 0.018 0.982 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.521 13.977 -6.818 26.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.193 4.193 3 C 0.098 3.902 4 O -0.307 6.307 5 C 0.001 3.999 6 C -0.179 4.179 7 C 0.307 3.693 8 O -0.426 6.426 9 N -0.339 5.339 10 C -0.012 4.012 11 C -0.162 4.162 12 C -0.113 4.113 13 C 0.031 3.969 14 N -0.376 5.376 15 C -0.370 4.370 16 H 0.088 0.912 17 C -0.211 4.211 18 N -0.582 5.582 19 Si 0.738 3.262 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.166 4.166 24 C -0.018 4.018 25 H 0.239 0.761 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.035 0.965 38 H 0.036 0.964 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.229 14.237 -6.682 26.420 hybrid contribution 0.668 -0.478 0.482 0.953 sum -20.560 13.759 -6.200 25.504 Atomic orbital electron populations 1.24985 0.95904 0.97538 1.00878 1.22572 0.93919 1.02147 1.00624 1.19052 0.84601 0.84727 1.01804 1.87866 1.21794 1.25415 1.95576 1.22178 0.79625 0.95909 1.02151 1.21492 0.92949 0.97773 1.05678 1.20299 0.89898 0.83014 0.76105 1.90700 1.65331 1.36024 1.50588 1.48149 1.07736 1.05689 1.72329 1.21730 0.78577 1.01824 0.99051 1.21974 1.01851 0.95101 0.97239 1.21366 0.93365 0.96089 1.00529 1.20666 0.87184 0.94834 0.94261 1.42380 1.05368 1.61908 1.27978 1.19280 0.92883 1.23261 1.01537 0.91201 1.24737 0.96731 1.01404 0.98206 1.69664 1.08818 1.50136 1.29614 0.86122 0.79444 0.79859 0.80797 1.20600 1.21888 1.21891 1.21923 0.97003 0.99916 0.97746 1.21855 0.94780 0.85680 0.99437 0.76143 0.90581 0.90618 0.91934 0.91989 0.87990 0.87861 0.91385 0.89181 0.89344 0.91880 0.90952 0.96467 0.96402 0.78254 0.93585 0.91455 0.90466 0.89815 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 19.25 29.55 0.57 -0.72 16 2 C -0.19 -1.72 13.73 -37.13 -0.51 -2.23 16 3 C 0.17 1.37 6.41 34.37 0.22 1.59 16 4 O -0.39 -3.81 10.30 -35.23 -0.36 -4.18 16 5 C 0.08 0.72 5.23 37.16 0.19 0.92 16 6 C -0.14 -1.25 4.42 -27.88 -0.12 -1.37 16 7 C 0.52 6.36 7.70 -10.99 -0.08 6.28 16 8 O -0.55 -8.58 15.39 5.56 0.09 -8.50 16 9 N -0.61 -7.19 2.97 -172.74 -0.51 -7.71 16 10 C 0.11 1.48 6.42 -3.71 -0.02 1.46 16 11 C -0.12 -1.89 5.27 -26.45 -0.14 -2.03 16 12 C -0.09 -1.42 2.19 -90.42 -0.20 -1.62 16 13 C 0.16 3.09 5.65 -4.04 -0.02 3.06 16 14 N -0.73 -18.23 5.32 -59.91 -0.32 -18.55 16 15 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 16 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 17 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 18 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 19 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 23 C -0.13 -1.44 5.37 -26.59 -0.14 -1.58 16 24 C 0.11 1.00 6.34 -3.68 -0.02 0.98 16 25 H 0.22 0.78 7.80 -54.10 -0.42 0.36 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 29 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 30 H 0.10 0.76 7.94 -51.93 -0.41 0.35 16 31 H 0.10 0.82 7.69 -51.93 -0.40 0.42 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 1.31 7.00 -51.93 -0.36 0.95 16 34 H 0.09 1.56 7.16 -51.93 -0.37 1.19 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.38 9.96 6.85 -40.82 -0.28 9.68 16 40 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 43 H 0.08 0.59 5.93 -51.93 -0.31 0.29 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 365.53 15.07 5.51 5.51 Total: -1.00 -33.68 365.53 -7.60 -41.28 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -7.17 Total: 4.72 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -0.53 Total: -2.60 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.11 Total: -53.65 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.28 Total: -12.68 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.68 -7.60 -41.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205258393.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.889 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds