Wall clock time and date at job start Tue Mar 31 2020 08:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 O 1.42907 * 109.47275 * 357.51717 * 3 2 1 5 5 C 1.42906 * 113.99970 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.46934 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.46931 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99808 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00023 * 180.02562 * 7 6 5 10 10 C 1.46919 * 120.63255 * 179.97438 * 9 7 6 11 11 C 1.53195 * 108.89273 * 126.34238 * 10 9 7 12 12 C 1.53346 * 109.14901 * 54.57640 * 11 10 9 13 13 C 1.53004 * 109.41904 * 178.67276 * 12 11 10 14 14 N 1.46500 * 109.47150 * 295.13157 * 13 12 11 15 15 C 1.36934 * 119.99724 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00570 * 359.97438 * 15 14 13 17 17 C 1.38817 * 119.99789 * 179.97438 * 15 14 13 18 18 N 1.31618 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99915 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47150 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46998 * 120.00159 * 19 17 15 22 22 H 1.48507 * 109.47070 * 240.00019 * 19 17 15 23 23 C 1.53034 * 109.61010 * 298.71225 * 12 11 10 24 24 C 1.46933 * 120.62741 * 0.02562 * 9 7 6 25 25 H 4.38449 * 5.44330 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.47208 * 237.51694 * 3 2 1 27 27 H 1.09007 * 109.47450 * 117.51567 * 3 2 1 28 28 H 1.08996 * 109.47067 * 60.00175 * 5 4 3 29 29 H 1.09001 * 109.47330 * 300.00061 * 5 4 3 30 30 H 1.09001 * 109.46646 * 60.00037 * 6 5 4 31 31 H 1.09001 * 109.47188 * 300.00180 * 6 5 4 32 32 H 1.09002 * 109.58751 * 246.20189 * 10 9 7 33 33 H 1.08996 * 109.58750 * 6.48373 * 10 9 7 34 34 H 1.08997 * 109.49914 * 174.65962 * 11 10 9 35 35 H 1.09002 * 109.49585 * 294.75599 * 11 10 9 36 36 H 1.09001 * 109.42242 * 58.75065 * 12 11 10 37 37 H 1.09001 * 109.46592 * 55.13132 * 13 12 11 38 38 H 1.08997 * 109.47133 * 175.12697 * 13 12 11 39 39 H 0.96999 * 119.99704 * 359.97438 * 14 13 12 40 40 H 0.97003 * 120.00052 * 179.97438 * 18 17 15 41 41 H 1.08994 * 109.50232 * 301.42239 * 23 12 11 42 42 H 1.09007 * 109.52628 * 181.33900 * 23 12 11 43 43 H 1.08994 * 109.58580 * 353.38021 * 24 9 7 44 44 H 1.09006 * 109.57831 * 113.65514 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1230 -1.3452 0.0584 5 6 4.5476 -1.4573 0.0627 6 6 4.9428 -2.9340 0.1274 7 6 6.4451 -3.0521 0.1326 8 8 7.1320 -2.0536 0.0893 9 7 7.0253 -4.2675 0.1853 10 6 8.4886 -4.3988 0.1905 11 6 8.9063 -5.2470 1.3959 12 6 8.1525 -6.5819 1.3571 13 6 8.5897 -7.4476 2.5405 14 7 10.0058 -7.7939 2.3953 15 6 10.6218 -8.5680 3.3421 16 1 10.0640 -8.9227 4.1961 17 6 11.9634 -8.8966 3.2043 18 7 12.6432 -8.4647 2.1633 19 14 12.8037 -9.9530 4.4956 20 1 11.8276 -10.3069 5.5573 21 1 13.3180 -11.1936 3.8619 22 1 13.9335 -9.1979 5.0943 23 6 6.6465 -6.3240 1.4430 24 6 6.2064 -5.4863 0.2376 25 1 -1.0498 -0.0003 0.0002 26 1 3.0091 0.5527 0.8669 27 1 3.0092 0.4756 -0.9115 28 1 4.9505 -0.9354 0.9306 29 1 4.9498 -1.0127 -0.8477 30 1 4.5398 -3.4562 -0.7403 31 1 4.5406 -3.3781 1.0379 32 1 8.8152 -4.8847 -0.7289 33 1 8.9439 -3.4112 0.2634 34 1 9.9800 -5.4304 1.3573 35 1 8.6601 -4.7174 2.3163 36 1 8.3797 -7.0994 0.4251 37 1 8.4442 -6.8946 3.4685 38 1 7.9931 -8.3595 2.5636 39 1 10.5069 -7.4750 1.6285 40 1 13.5808 -8.6940 2.0672 41 1 6.4216 -5.7844 2.3629 42 1 6.1132 -7.2747 1.4392 43 1 5.1558 -5.2163 0.3440 44 1 6.3453 -6.0593 -0.6792 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205258393.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:04 Heat of formation + Delta-G solvation = -45.206994 kcal Electronic energy + Delta-G solvation = -22924.546660 eV Core-core repulsion = 19456.692988 eV Total energy + Delta-G solvation = -3467.853672 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.32573 -39.31612 -38.72231 -36.56759 -34.58208 -34.37994 -32.97564 -32.21465 -31.56717 -28.39980 -27.80699 -25.66524 -25.05231 -23.71199 -23.14407 -21.37237 -20.03094 -19.34540 -19.11124 -18.45243 -17.47734 -17.24164 -16.72238 -16.65276 -16.35310 -15.88846 -15.63750 -15.38040 -15.30445 -14.91878 -14.66235 -14.21669 -14.08123 -13.86473 -13.66234 -13.40119 -13.11960 -12.91506 -12.78333 -12.67795 -12.45745 -12.18195 -12.10394 -11.96720 -11.66889 -11.54773 -11.45021 -11.40808 -11.37207 -10.93846 -10.83604 -10.57239 -9.67029 -8.98115 -7.95385 -5.23346 1.43476 1.46875 1.47524 1.56563 1.57584 1.82829 1.98791 2.55866 2.89553 3.38308 3.50860 3.64487 3.77637 3.87404 3.88119 4.03803 4.09528 4.16840 4.30035 4.31931 4.35660 4.42077 4.44516 4.55457 4.65084 4.73684 4.77742 4.81568 4.83691 4.91035 4.99098 5.03016 5.04247 5.12322 5.17445 5.30156 5.47972 5.55365 5.58436 6.05864 6.27582 6.40119 6.60279 7.10070 7.33901 8.11471 8.34075 9.28282 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.040034 B = 0.002227 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.241491 B =12568.963173 C =12874.174617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.239 4.239 3 C 0.167 3.833 4 O -0.399 6.399 5 C 0.080 3.920 6 C -0.130 4.130 7 C 0.516 3.484 8 O -0.589 6.589 9 N -0.606 5.606 10 C 0.118 3.882 11 C -0.115 4.115 12 C -0.085 4.085 13 C 0.156 3.844 14 N -0.744 5.744 15 C -0.244 4.244 16 H 0.074 0.926 17 C -0.077 4.077 18 N -0.969 5.969 19 Si 0.972 3.028 20 H -0.267 1.267 21 H -0.292 1.292 22 H -0.295 1.295 23 C -0.120 4.120 24 C 0.106 3.894 25 H 0.253 0.747 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.125 0.875 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.012 0.988 38 H 0.024 0.976 39 H 0.374 0.626 40 H 0.251 0.749 41 H 0.066 0.934 42 H 0.097 0.903 43 H 0.119 0.881 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.264 13.532 -6.823 28.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.239 4.239 3 C 0.092 3.908 4 O -0.319 6.319 5 C 0.004 3.996 6 C -0.170 4.170 7 C 0.306 3.694 8 O -0.470 6.470 9 N -0.339 5.339 10 C -0.005 4.005 11 C -0.154 4.154 12 C -0.104 4.104 13 C 0.029 3.971 14 N -0.387 5.387 15 C -0.376 4.376 16 H 0.092 0.908 17 C -0.269 4.269 18 N -0.620 5.620 19 Si 0.802 3.198 20 H -0.191 1.191 21 H -0.219 1.219 22 H -0.222 1.222 23 C -0.159 4.159 24 C -0.016 4.016 25 H 0.269 0.731 26 H 0.104 0.896 27 H 0.106 0.894 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.030 0.970 38 H 0.042 0.958 39 H 0.207 0.793 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.115 0.885 43 H 0.137 0.863 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -24.033 13.778 -6.672 28.495 hybrid contribution 1.435 -0.304 0.502 1.551 sum -22.598 13.474 -6.170 27.024 Atomic orbital electron populations 1.25860 0.96819 0.95803 0.99327 1.23074 0.94844 1.03796 1.02184 1.19226 0.84594 0.84099 1.02891 1.87824 1.21747 1.26648 1.95670 1.22112 0.79565 0.96230 1.01733 1.21469 0.90069 0.97913 1.07501 1.20896 0.91214 0.82335 0.74975 1.90686 1.66534 1.37396 1.52396 1.48227 1.07007 1.06701 1.71917 1.21483 0.80179 1.00514 0.98304 1.21817 1.00032 0.95756 0.97748 1.21274 0.96205 0.94638 0.98262 1.20859 0.84476 0.95690 0.96049 1.42603 1.07487 1.61528 1.27116 1.19682 0.93281 1.22750 1.01924 0.90791 1.25556 0.97591 1.03325 1.00412 1.69817 1.08789 1.51824 1.31539 0.85085 0.78249 0.77874 0.78621 1.19090 1.21930 1.22199 1.21886 0.93759 1.01408 0.98817 1.22071 0.96052 0.84388 0.99065 0.73057 0.89646 0.89448 0.92680 0.92300 0.85700 0.86132 0.90581 0.90727 0.92539 0.92926 0.91212 0.96960 0.95784 0.79322 0.94054 0.91498 0.88479 0.86346 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 19.25 74.32 1.43 -0.61 16 2 C -0.24 -3.98 13.73 31.12 0.43 -3.55 16 3 C 0.17 2.50 6.41 70.17 0.45 2.95 16 4 O -0.40 -7.27 10.30 -148.98 -1.53 -8.80 16 5 C 0.08 1.38 5.23 71.98 0.38 1.76 16 6 C -0.13 -1.98 4.42 29.85 0.13 -1.85 16 7 C 0.52 11.88 7.70 87.66 0.67 12.55 16 8 O -0.59 -18.41 15.39 -3.03 -0.05 -18.46 16 9 N -0.61 -13.29 2.97 -818.81 -2.43 -15.72 16 10 C 0.12 3.16 6.42 86.36 0.55 3.72 16 11 C -0.12 -3.59 5.27 30.78 0.16 -3.42 16 12 C -0.08 -2.48 2.19 -10.66 -0.02 -2.50 16 13 C 0.16 6.01 5.65 86.38 0.49 6.50 16 14 N -0.74 -37.60 5.32 -343.45 -1.83 -39.43 16 15 C -0.24 -13.73 9.99 84.04 0.84 -12.89 16 16 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 17 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 18 N -0.97 -59.52 13.06 21.65 0.28 -59.23 16 19 Si 0.97 46.42 29.55 68.60 2.03 48.44 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 22 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 23 C -0.12 -2.38 5.37 30.69 0.16 -2.21 16 24 C 0.11 1.63 6.34 86.38 0.55 2.17 16 25 H 0.25 1.02 7.80 -4.43 -0.03 0.98 16 26 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.09 1.03 8.14 -2.38 -0.02 1.02 16 28 H 0.05 1.01 8.10 -2.39 -0.02 1.00 16 29 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 30 H 0.12 1.37 7.94 -2.39 -0.02 1.35 16 31 H 0.12 1.47 7.69 -2.39 -0.02 1.45 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 2.24 7.00 -2.39 -0.02 2.23 16 34 H 0.06 2.11 7.16 -2.39 -0.02 2.09 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.37 20.04 6.85 -92.71 -0.63 19.41 16 40 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 41 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 42 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 43 H 0.12 1.08 5.93 -2.39 -0.01 1.07 16 44 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -73.97 365.53 3.50 -70.48 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.34 Total: 24.08 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 6.69 Total: -1.35 kcal Atomic # 7 Polarization: -110.41 SS G_CDS: -3.98 Total: -114.39 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -1.58 Total: -27.26 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.44 kcal Total: -73.97 3.50 -70.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205258393.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.268 kcal (2) G-P(sol) polarization free energy of solvation -73.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds