Wall clock time and date at job start Tue Mar 31 2020 06:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46932 * 2 1 4 4 N 1.46905 * 109.46823 * 181.04666 * 3 2 1 5 5 C 1.46904 * 111.00073 * 299.38760 * 4 3 2 6 6 C 1.50698 * 109.47470 * 294.03018 * 5 4 3 7 7 H 1.08006 * 119.99883 * 355.06256 * 6 5 4 8 8 C 1.37875 * 120.00189 * 175.06900 * 6 5 4 9 9 N 1.31518 * 119.99796 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99987 * 179.97438 * 8 6 5 11 11 H 1.48491 * 109.47238 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47047 * 119.99721 * 10 8 6 13 13 H 1.48496 * 109.47010 * 239.99501 * 10 8 6 14 14 C 1.46894 * 111.00353 * 63.34650 * 4 3 2 15 15 C 1.50709 * 109.47147 * 66.04435 * 14 4 3 16 16 C 1.38055 * 120.33061 * 269.98099 * 15 14 4 17 17 N 1.32000 * 120.93289 * 179.74467 * 16 15 14 18 18 C 1.32165 * 121.70066 * 0.56724 * 17 16 15 19 19 O 1.35763 * 119.70942 * 179.71098 * 18 17 16 20 20 C 1.42894 * 117.00286 * 359.72894 * 19 18 17 21 21 C 1.39347 * 120.57345 * 359.43330 * 18 17 16 22 22 O 1.35994 * 120.49378 * 180.29815 * 21 18 17 23 23 C 1.42896 * 117.00355 * 179.97438 * 22 21 18 24 24 C 1.38779 * 120.33461 * 89.99983 * 15 14 4 25 25 H 1.09001 * 109.47240 * 299.99942 * 1 2 3 26 26 H 1.09001 * 109.47486 * 59.99808 * 1 2 3 27 27 H 1.09001 * 109.47175 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47240 * 240.00058 * 2 1 3 29 29 H 1.09001 * 109.47486 * 120.00192 * 2 1 3 30 30 H 1.08995 * 109.47285 * 61.05001 * 3 2 1 31 31 H 1.08992 * 109.47188 * 301.04372 * 3 2 1 32 32 H 1.09005 * 109.46291 * 54.02872 * 5 4 3 33 33 H 1.09001 * 109.47087 * 174.02215 * 5 4 3 34 34 H 0.96995 * 120.00160 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.47164 * 306.05007 * 14 4 3 36 36 H 1.08994 * 109.47544 * 186.04163 * 14 4 3 37 37 H 1.08001 * 119.53478 * 0.04364 * 16 15 14 38 38 H 1.08996 * 109.47336 * 60.00114 * 20 19 18 39 39 H 1.09000 * 109.47271 * 180.02562 * 20 19 18 40 40 H 1.08999 * 109.47241 * 299.99702 * 20 19 18 41 41 H 1.09000 * 109.47317 * 300.00728 * 23 22 21 42 42 H 1.09005 * 109.46913 * 60.00224 * 23 22 21 43 43 H 1.08996 * 109.47336 * 179.97438 * 23 22 21 44 44 H 1.07996 * 120.77682 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5088 1.4426 -0.0253 5 6 4.0557 0.7623 1.1563 6 6 3.7169 1.5536 2.3933 7 1 3.2218 2.5094 2.3042 8 6 4.0388 1.0575 3.6387 9 7 4.6413 -0.1066 3.7472 10 14 3.6194 2.0386 5.1720 11 1 2.9499 3.3051 4.7814 12 1 2.7100 1.2432 6.0353 13 1 4.8656 2.3477 5.9181 14 6 4.0140 0.8349 -1.2635 15 6 3.6352 1.6995 -2.4384 16 6 2.4414 1.4924 -3.1001 17 7 2.0954 2.2458 -4.1273 18 6 2.8754 3.2162 -4.5708 19 8 2.4821 3.9626 -5.6344 20 6 1.2213 3.6386 -6.2237 21 6 4.0953 3.4835 -3.9525 22 8 4.8938 4.4864 -4.4064 23 6 6.1278 4.6958 -3.7168 24 6 4.4831 2.7114 -2.8662 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6921 1.9509 0.8992 31 1 1.6614 1.9617 -0.8804 32 1 3.6236 -0.2354 1.2335 33 1 5.1386 0.6829 1.0610 34 1 4.8675 -0.4558 4.6234 35 1 3.5775 -0.1563 -1.3862 36 1 5.0994 0.7499 -1.2101 37 1 1.7789 0.7061 -2.7696 38 1 0.4328 3.7509 -5.4796 39 1 1.0289 4.3088 -7.0615 40 1 1.2407 2.6087 -6.5800 41 1 5.9247 4.9329 -2.6725 42 1 6.7333 3.7911 -3.7728 43 1 6.6668 5.5225 -4.1794 44 1 5.4228 2.8933 -2.3661 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209614828.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:26 Heat of formation + Delta-G solvation = -56.902296 kcal Electronic energy + Delta-G solvation = -24257.250917 eV Core-core repulsion = 20788.890098 eV Total energy + Delta-G solvation = -3468.360819 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.01549 -39.61839 -39.47410 -38.17376 -34.85404 -34.09967 -32.76418 -31.76056 -29.34998 -28.29442 -28.10649 -27.41251 -25.57302 -23.87013 -23.71427 -23.08423 -20.87838 -19.48220 -18.65561 -18.46497 -18.17644 -17.36034 -16.85536 -16.46486 -16.22614 -16.08719 -15.87715 -15.50402 -15.23557 -15.05269 -14.44642 -14.31310 -14.19482 -14.13871 -13.51143 -13.22479 -12.91633 -12.77032 -12.70690 -12.64765 -12.57562 -12.40661 -12.34719 -12.23097 -12.16365 -12.01259 -11.79923 -11.31664 -11.26808 -10.80368 -10.57786 -10.44767 -9.03879 -8.80229 -8.16491 -6.24632 0.11698 0.16931 1.40296 1.42233 1.54334 2.02967 2.31177 2.41586 2.63496 3.16572 3.35442 3.49872 3.64096 3.94849 4.02067 4.07998 4.16712 4.21897 4.32443 4.39828 4.48207 4.50670 4.51233 4.57862 4.62892 4.73885 4.76664 4.79290 4.83620 4.92042 5.07914 5.13673 5.22047 5.28280 5.30591 5.37471 5.47330 5.55985 5.71253 5.95721 6.11262 6.35419 6.39977 6.67624 6.77543 6.92003 7.44449 8.93649 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017512 B = 0.004076 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.561689 B = 6867.279952 C = 7795.350396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.156 4.156 3 C 0.069 3.931 4 N -0.538 5.538 5 C 0.205 3.795 6 C -0.514 4.514 7 H 0.056 0.944 8 C 0.007 3.993 9 N -0.932 5.932 10 Si 0.959 3.041 11 H -0.267 1.267 12 H -0.280 1.280 13 H -0.280 1.280 14 C 0.097 3.903 15 C -0.112 4.112 16 C 0.102 3.898 17 N -0.508 5.508 18 C 0.275 3.725 19 O -0.316 6.316 20 C 0.037 3.963 21 C 0.055 3.945 22 O -0.319 6.319 23 C 0.017 3.983 24 C -0.115 4.115 25 H 0.046 0.954 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.040 0.960 30 H 0.054 0.946 31 H 0.071 0.929 32 H -0.014 1.014 33 H 0.002 0.998 34 H 0.263 0.737 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.172 0.828 38 H 0.055 0.945 39 H 0.122 0.878 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.125 0.875 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.361 5.033 -17.341 18.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.194 4.194 3 C -0.059 4.059 4 N -0.261 5.261 5 C 0.079 3.921 6 C -0.553 4.553 7 H 0.074 0.926 8 C -0.191 4.191 9 N -0.573 5.573 10 Si 0.784 3.216 11 H -0.191 1.191 12 H -0.206 1.206 13 H -0.206 1.206 14 C -0.031 4.031 15 C -0.114 4.114 16 C -0.053 4.053 17 N -0.232 5.232 18 C 0.094 3.906 19 O -0.223 6.223 20 C -0.058 4.058 21 C 0.007 3.993 22 O -0.232 6.232 23 C -0.078 4.078 24 C -0.141 4.141 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.003 0.997 33 H 0.020 0.980 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.189 0.811 38 H 0.073 0.927 39 H 0.140 0.860 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.143 0.857 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.803 5.638 -17.921 19.168 hybrid contribution 0.532 -0.721 1.793 2.005 sum -3.271 4.917 -16.128 17.175 Atomic orbital electron populations 1.21620 0.94118 1.01938 1.01921 1.22060 0.97606 0.98668 1.01116 1.22023 0.87299 0.95555 1.01036 1.62258 1.07805 1.54678 1.01347 1.19439 0.93323 0.92156 0.87176 1.21429 1.37736 1.04884 0.91228 0.92581 1.25750 0.95281 0.95979 1.02121 1.70067 1.42736 1.19745 1.24710 0.85489 0.77929 0.78882 0.79269 1.19140 1.20601 1.20563 1.20908 1.00459 0.94508 0.87254 1.20502 0.95528 0.97837 0.97572 1.22403 0.94796 0.97702 0.90443 1.67408 1.32729 1.06736 1.16314 1.19311 0.89464 0.91603 0.90223 1.86286 1.40053 1.54403 1.41580 1.23053 0.82023 1.02525 0.98176 1.19014 0.91419 0.92933 0.95941 1.86134 1.32247 1.48489 1.56329 1.23389 0.82780 1.03674 0.97938 1.21572 1.02196 0.95186 0.95182 0.93512 0.91427 0.92098 0.91427 0.94111 0.92727 0.91053 0.99659 0.98018 0.92855 0.93074 0.90460 0.81102 0.92660 0.86015 0.92351 0.92333 0.91542 0.85660 0.82429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.91 71.98 0.71 -3.03 16 2 C -0.16 -5.21 5.19 30.59 0.16 -5.05 16 3 C 0.07 2.55 4.80 86.30 0.41 2.97 16 4 N -0.54 -21.85 4.69 -905.36 -4.25 -26.10 16 5 C 0.20 10.30 4.49 85.56 0.38 10.69 16 6 C -0.51 -28.29 8.40 25.60 0.22 -28.08 16 7 H 0.06 3.10 7.29 -2.91 -0.02 3.08 16 8 C 0.01 0.37 5.46 84.65 0.46 0.83 16 9 N -0.93 -54.60 13.29 21.45 0.28 -54.32 16 10 Si 0.96 43.84 29.54 68.60 2.03 45.86 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 13 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 14 C 0.10 3.20 4.95 85.56 0.42 3.62 16 15 C -0.11 -3.29 4.90 -19.78 -0.10 -3.39 16 16 C 0.10 2.84 9.08 84.62 0.77 3.61 16 17 N -0.51 -14.72 9.22 -308.56 -2.84 -17.56 16 18 C 0.27 8.23 7.50 84.91 0.64 8.87 16 19 O -0.32 -8.76 10.27 -77.14 -0.79 -9.55 16 20 C 0.04 0.72 10.38 113.37 1.18 1.89 16 21 C 0.06 1.60 6.72 22.67 0.15 1.75 16 22 O -0.32 -8.54 10.29 -79.73 -0.82 -9.36 16 23 C 0.02 0.30 9.83 113.37 1.11 1.42 16 24 C -0.12 -3.25 8.82 22.53 0.20 -3.05 16 25 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.07 2.02 5.73 -2.39 -0.01 2.00 16 29 H 0.04 1.68 6.34 -2.39 -0.02 1.66 16 30 H 0.05 2.30 6.94 -2.39 -0.02 2.28 16 31 H 0.07 2.38 5.94 -2.39 -0.01 2.36 16 32 H -0.01 -0.77 6.04 -2.38 -0.01 -0.78 16 33 H 0.00 0.09 7.93 -2.39 -0.02 0.08 16 34 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 35 H 0.05 1.61 6.04 -2.39 -0.01 1.59 16 36 H 0.08 2.54 7.88 -2.39 -0.02 2.52 16 37 H 0.17 4.20 7.33 -2.91 -0.02 4.18 16 38 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 39 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.06 1.10 8.11 -2.39 -0.02 1.08 16 41 H 0.06 1.08 7.70 -2.39 -0.02 1.06 16 42 H 0.07 1.06 7.70 -2.38 -0.02 1.04 16 43 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.16 3.99 6.44 -2.91 -0.02 3.97 16 Total: -1.00 -65.68 353.59 1.32 -64.36 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.99 Total: 13.63 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 6.72 Total: -6.96 kcal Atomic # 7 Polarization: -91.17 SS G_CDS: -6.81 Total: -97.98 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -1.61 Total: -18.92 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -65.68 1.32 -64.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209614828.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.459 kcal (2) G-P(sol) polarization free energy of solvation -65.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds