Wall clock time and date at job start Tue Mar 31 2020 08:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50698 * 120.00222 * 2 1 4 4 O 1.42900 * 109.47388 * 134.99658 * 3 2 1 5 5 C 1.42904 * 113.99758 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.46550 * 180.02562 * 5 4 3 7 7 O 1.21280 * 120.00524 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99638 * 179.97438 * 6 5 4 9 9 C 1.47153 * 121.21649 * 0.02562 * 8 6 5 10 10 C 1.52836 * 108.02473 * 122.66537 * 9 8 6 11 11 C 1.53199 * 110.51956 * 57.31856 * 10 9 8 12 12 H 1.09000 * 113.05206 * 71.05149 * 11 10 9 13 13 C 1.56034 * 106.38034 * 195.46208 * 11 10 9 14 14 C 1.54503 * 102.61197 * 78.39468 * 13 11 10 15 15 N 1.46649 * 107.02894 * 22.26795 * 14 13 11 16 16 C 1.36938 * 125.63874 * 182.07415 * 15 14 13 17 17 H 1.08002 * 120.00068 * 174.61934 * 16 15 14 18 18 C 1.38814 * 119.99877 * 354.61902 * 16 15 14 19 19 N 1.31612 * 119.99927 * 6.76274 * 18 16 15 20 20 Si 1.86803 * 119.99855 * 186.75470 * 18 16 15 21 21 H 1.48499 * 109.46819 * 94.98756 * 20 18 16 22 22 H 1.48498 * 109.47019 * 214.98489 * 20 18 16 23 23 H 1.48498 * 109.47129 * 334.98976 * 20 18 16 24 24 C 1.46471 * 108.30146 * 2.56971 * 15 14 13 25 25 H 1.09004 * 108.42109 * 88.74747 * 24 15 14 26 26 C 1.46757 * 121.21737 * 179.97438 * 8 6 5 27 27 H 1.08008 * 120.00028 * 180.02562 * 1 2 3 28 28 H 1.08003 * 120.00431 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.00007 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47138 * 14.99631 * 3 2 1 31 31 H 1.08997 * 109.46993 * 255.00231 * 3 2 1 32 32 H 1.09003 * 109.46890 * 60.00105 * 5 4 3 33 33 H 1.08997 * 109.47334 * 300.00006 * 5 4 3 34 34 H 1.08998 * 109.75783 * 242.31503 * 9 8 6 35 35 H 1.08999 * 109.75972 * 3.01842 * 9 8 6 36 36 H 1.09006 * 109.25212 * 177.64972 * 10 9 8 37 37 H 1.08999 * 109.25639 * 297.08132 * 10 9 8 38 38 H 1.08997 * 110.78397 * 196.67896 * 13 11 10 39 39 H 1.09001 * 110.77911 * 319.92726 * 13 11 10 40 40 H 1.09006 * 109.89858 * 142.23626 * 14 13 11 41 41 H 1.09004 * 109.90101 * 263.29329 * 14 13 11 42 42 H 0.97004 * 120.00321 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.22954 * 352.87110 * 26 8 6 44 44 H 1.08999 * 109.22801 * 112.27631 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9084 2.4349 1.0320 6 6 4.9946 2.2564 2.0612 7 8 5.0897 1.2104 2.6675 8 7 5.8604 3.2594 2.3080 9 6 5.7694 4.5399 1.5886 10 6 5.6104 5.6534 2.6233 11 6 6.7793 5.6372 3.6136 12 1 7.7183 5.9693 3.1709 13 6 6.3390 6.5119 4.8283 14 6 5.4070 5.5592 5.6099 15 7 5.7637 4.1919 5.2176 16 6 5.1464 3.0499 5.6536 17 1 5.4266 2.0927 5.2393 18 6 4.1606 3.1227 6.6282 19 7 3.7251 4.2953 7.0374 20 14 3.4522 1.5562 7.3588 21 1 4.1725 1.2259 8.6146 22 1 2.0103 1.7552 7.6529 23 1 3.6106 0.4423 6.3896 24 6 6.8971 4.2598 4.2923 25 1 7.8185 4.2402 4.8743 26 6 6.9278 3.1148 3.3047 27 1 -0.5400 -0.9354 0.0004 28 1 -0.5401 0.9353 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3855 2.1161 0.2659 31 1 2.4754 1.4867 -0.9926 32 1 3.2688 3.2696 1.3191 33 1 4.3587 2.6395 0.0607 34 1 6.6781 4.7023 1.0090 35 1 4.9056 4.5285 0.9239 36 1 5.5829 6.6165 2.1135 37 1 4.6769 5.5083 3.1670 38 1 7.2001 6.7937 5.4343 39 1 5.7985 7.3966 4.4921 40 1 5.5494 5.6974 6.6817 41 1 4.3681 5.7567 5.3453 42 1 3.0360 4.3462 7.7182 43 1 6.7938 2.1751 3.8406 44 1 7.8930 3.1046 2.7983 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222458536.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:24 Heat of formation + Delta-G solvation = -20.485722 kcal Electronic energy + Delta-G solvation = -25189.998862 eV Core-core repulsion = 21723.217184 eV Total energy + Delta-G solvation = -3466.781678 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.99562 -38.45494 -37.31658 -34.97520 -33.88061 -32.79209 -31.23687 -29.73257 -28.40212 -27.76048 -25.57067 -24.57459 -23.51465 -22.53249 -20.26356 -19.96753 -19.63855 -18.21444 -17.21505 -16.61771 -16.22684 -16.15168 -15.55783 -14.99149 -14.65819 -14.45322 -14.24979 -13.92379 -13.65774 -13.22328 -13.01536 -12.79277 -12.64421 -12.14867 -12.00639 -11.91517 -11.61739 -11.35541 -11.26928 -11.02815 -10.90532 -10.75198 -10.64542 -10.04898 -9.97097 -9.83361 -9.79518 -9.62633 -9.47533 -9.40710 -9.14521 -8.46215 -8.10478 -6.72515 -5.60854 -2.92269 2.03592 3.04920 3.21898 3.51945 3.57485 3.66220 4.06050 4.63610 4.75270 4.97723 4.99645 5.02882 5.13307 5.16031 5.23580 5.29774 5.38659 5.44483 5.52235 5.53773 5.70604 5.72661 5.74260 5.79106 5.98650 6.03369 6.14773 6.27222 6.32092 6.45243 6.45486 6.48384 6.53160 6.64356 6.75453 6.94373 7.02100 7.20022 7.64558 7.71070 7.89177 7.98067 8.35787 8.72217 9.35209 9.95270 10.58369 11.51264 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012061 B = 0.006231 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.924358 B = 4492.260459 C = 5974.667093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.147 4.147 3 C 0.086 3.914 4 O -0.357 6.357 5 C 0.049 3.951 6 C 0.522 3.478 7 O -0.514 6.514 8 N -0.595 5.595 9 C 0.111 3.889 10 C -0.123 4.123 11 C -0.102 4.102 12 H 0.075 0.925 13 C -0.144 4.144 14 C 0.179 3.821 15 N -0.589 5.589 16 C -0.216 4.216 17 H 0.084 0.916 18 C -0.007 4.007 19 N -0.925 5.925 20 Si 0.901 3.099 21 H -0.291 1.291 22 H -0.293 1.293 23 H -0.276 1.276 24 C 0.153 3.847 25 H 0.028 0.972 26 C 0.116 3.884 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.117 0.883 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.041 0.959 41 H 0.042 0.958 42 H 0.249 0.751 43 H 0.095 0.905 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.174 2.613 -16.431 16.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.165 4.165 3 C 0.010 3.990 4 O -0.275 6.275 5 C -0.031 4.031 6 C 0.308 3.692 7 O -0.388 6.388 8 N -0.331 5.331 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.121 4.121 12 H 0.094 0.906 13 C -0.183 4.183 14 C 0.054 3.946 15 N -0.314 5.314 16 C -0.344 4.344 17 H 0.101 0.899 18 C -0.203 4.203 19 N -0.573 5.573 20 Si 0.732 3.268 21 H -0.218 1.218 22 H -0.220 1.220 23 H -0.201 1.201 24 C 0.045 3.955 25 H 0.045 0.955 26 C -0.007 4.007 27 H 0.122 0.878 28 H 0.116 0.884 29 H 0.135 0.865 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.114 0.886 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.059 1.781 -15.828 15.963 hybrid contribution -0.580 -0.318 0.361 0.753 sum 0.479 1.463 -15.467 15.544 Atomic orbital electron populations 1.23816 0.95526 1.02220 1.00393 1.22723 0.95623 0.98247 0.99868 1.21588 0.89066 0.96166 0.92223 1.88070 1.44090 1.35133 1.60242 1.22232 0.93473 0.89048 0.98352 1.19868 0.81862 0.83963 0.83499 1.90714 1.71443 1.27161 1.49481 1.47727 1.31787 1.13576 1.39966 1.21661 1.01280 0.84016 0.94314 1.21849 1.00780 0.96759 0.96727 1.22390 0.96851 0.97276 0.95614 0.90641 1.23182 1.00037 0.98240 0.96822 1.21081 0.95177 0.81995 0.96297 1.44130 1.34336 1.02753 1.50180 1.19116 1.14571 0.85468 1.15224 0.89875 1.24719 0.99445 0.96618 0.99493 1.69982 1.32181 1.21513 1.33668 0.86205 0.77943 0.83349 0.79295 1.21836 1.22016 1.20098 1.20711 0.92575 0.91752 0.90463 0.95457 1.21370 0.87675 1.02073 0.89594 0.87823 0.88422 0.86483 0.92617 0.92393 0.90364 0.90959 0.91617 0.90846 0.91998 0.90063 0.92790 0.92366 0.94076 0.93993 0.94102 0.88628 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.84 14.31 29.02 0.42 -1.43 16 2 C -0.15 -1.74 9.89 -36.02 -0.36 -2.09 16 3 C 0.09 1.05 6.35 36.00 0.23 1.28 16 4 O -0.36 -6.08 9.86 -55.14 -0.54 -6.62 16 5 C 0.05 0.74 4.78 36.01 0.17 0.91 16 6 C 0.52 10.19 7.79 -10.98 -0.09 10.10 16 7 O -0.51 -12.55 15.96 -14.35 -0.23 -12.78 16 8 N -0.60 -10.36 2.97 -174.11 -0.52 -10.88 16 9 C 0.11 1.44 6.35 -3.77 -0.02 1.41 16 10 C -0.12 -1.81 5.05 -26.71 -0.13 -1.95 16 11 C -0.10 -1.63 3.68 -88.37 -0.33 -1.96 16 12 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 13 C -0.14 -2.58 6.32 -24.32 -0.15 -2.73 16 14 C 0.18 4.28 4.58 -3.17 -0.01 4.26 16 15 N -0.59 -14.66 3.14 -165.05 -0.52 -15.17 16 16 C -0.22 -6.14 9.70 -15.06 -0.15 -6.29 16 17 H 0.08 2.46 6.49 -52.49 -0.34 2.12 16 18 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 19 N -0.93 -27.82 10.36 55.49 0.57 -27.25 16 20 Si 0.90 23.94 29.56 -169.99 -5.02 18.91 16 21 H -0.29 -7.64 7.11 56.52 0.40 -7.23 16 22 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 23 H -0.28 -7.48 7.11 56.52 0.40 -7.08 16 24 C 0.15 3.04 3.00 -68.31 -0.21 2.84 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 26 C 0.12 2.16 5.66 -4.79 -0.03 2.14 16 27 H 0.10 0.89 8.06 -52.48 -0.42 0.47 16 28 H 0.10 0.88 7.90 -52.48 -0.41 0.47 16 29 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 30 H 0.06 0.62 7.86 -51.93 -0.41 0.21 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.08 1.09 7.79 -51.93 -0.40 0.69 16 33 H 0.07 0.81 7.90 -51.93 -0.41 0.40 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.78 6.02 -51.93 -0.31 0.47 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.08 1.52 6.84 -51.93 -0.36 1.16 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.94 7.98 -51.93 -0.41 0.52 16 40 H 0.04 1.11 7.46 -51.93 -0.39 0.72 16 41 H 0.04 1.11 7.12 -51.93 -0.37 0.74 16 42 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.10 2.13 5.55 -51.93 -0.29 1.84 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 346.46 15.07 5.22 5.22 Total: -1.00 -35.07 346.46 -8.83 -43.90 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -7.05 Total: -1.52 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -0.75 Total: 6.19 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.46 Total: -53.30 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.77 Total: -19.41 kcal Atomic # 14 Polarization: 23.94 SS G_CDS: -5.02 Total: 18.91 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.07 -8.83 -43.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222458536.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.414 kcal (2) G-P(sol) polarization free energy of solvation -35.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds