Wall clock time and date at job start Tue Mar 31 2020 08:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50698 * 120.00222 * 2 1 4 4 O 1.42900 * 109.47388 * 134.99658 * 3 2 1 5 5 C 1.42904 * 113.99758 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.46550 * 180.02562 * 5 4 3 7 7 O 1.21280 * 120.00524 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99638 * 179.97438 * 6 5 4 9 9 C 1.47153 * 121.21649 * 0.02562 * 8 6 5 10 10 C 1.52836 * 108.02473 * 122.66537 * 9 8 6 11 11 C 1.53199 * 110.51956 * 57.31856 * 10 9 8 12 12 H 1.09000 * 113.05206 * 71.05149 * 11 10 9 13 13 C 1.56034 * 106.38034 * 195.46208 * 11 10 9 14 14 C 1.54503 * 102.61197 * 78.39468 * 13 11 10 15 15 N 1.46649 * 107.02894 * 22.26795 * 14 13 11 16 16 C 1.36938 * 125.63874 * 182.07415 * 15 14 13 17 17 H 1.08002 * 120.00068 * 174.61934 * 16 15 14 18 18 C 1.38814 * 119.99877 * 354.61902 * 16 15 14 19 19 N 1.31612 * 119.99927 * 6.76274 * 18 16 15 20 20 Si 1.86803 * 119.99855 * 186.75470 * 18 16 15 21 21 H 1.48499 * 109.46819 * 94.98756 * 20 18 16 22 22 H 1.48498 * 109.47019 * 214.98489 * 20 18 16 23 23 H 1.48498 * 109.47129 * 334.98976 * 20 18 16 24 24 C 1.46471 * 108.30146 * 2.56971 * 15 14 13 25 25 H 1.09004 * 108.42109 * 88.74747 * 24 15 14 26 26 C 1.46757 * 121.21737 * 179.97438 * 8 6 5 27 27 H 1.08008 * 120.00028 * 180.02562 * 1 2 3 28 28 H 1.08003 * 120.00431 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.00007 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47138 * 14.99631 * 3 2 1 31 31 H 1.08997 * 109.46993 * 255.00231 * 3 2 1 32 32 H 1.09003 * 109.46890 * 60.00105 * 5 4 3 33 33 H 1.08997 * 109.47334 * 300.00006 * 5 4 3 34 34 H 1.08998 * 109.75783 * 242.31503 * 9 8 6 35 35 H 1.08999 * 109.75972 * 3.01842 * 9 8 6 36 36 H 1.09006 * 109.25212 * 177.64972 * 10 9 8 37 37 H 1.08999 * 109.25639 * 297.08132 * 10 9 8 38 38 H 1.08997 * 110.78397 * 196.67896 * 13 11 10 39 39 H 1.09001 * 110.77911 * 319.92726 * 13 11 10 40 40 H 1.09006 * 109.89858 * 142.23626 * 14 13 11 41 41 H 1.09004 * 109.90101 * 263.29329 * 14 13 11 42 42 H 0.97004 * 120.00321 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.22954 * 352.87110 * 26 8 6 44 44 H 1.08999 * 109.22801 * 112.27631 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9084 2.4349 1.0320 6 6 4.9946 2.2564 2.0612 7 8 5.0897 1.2104 2.6675 8 7 5.8604 3.2594 2.3080 9 6 5.7694 4.5399 1.5886 10 6 5.6104 5.6534 2.6233 11 6 6.7793 5.6372 3.6136 12 1 7.7183 5.9693 3.1709 13 6 6.3390 6.5119 4.8283 14 6 5.4070 5.5592 5.6099 15 7 5.7637 4.1919 5.2176 16 6 5.1464 3.0499 5.6536 17 1 5.4266 2.0927 5.2393 18 6 4.1606 3.1227 6.6282 19 7 3.7251 4.2953 7.0374 20 14 3.4522 1.5562 7.3588 21 1 4.1725 1.2259 8.6146 22 1 2.0103 1.7552 7.6529 23 1 3.6106 0.4423 6.3896 24 6 6.8971 4.2598 4.2923 25 1 7.8185 4.2402 4.8743 26 6 6.9278 3.1148 3.3047 27 1 -0.5400 -0.9354 0.0004 28 1 -0.5401 0.9353 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3855 2.1161 0.2659 31 1 2.4754 1.4867 -0.9926 32 1 3.2688 3.2696 1.3191 33 1 4.3587 2.6395 0.0607 34 1 6.6781 4.7023 1.0090 35 1 4.9056 4.5285 0.9239 36 1 5.5829 6.6165 2.1135 37 1 4.6769 5.5083 3.1670 38 1 7.2001 6.7937 5.4343 39 1 5.7985 7.3966 4.4921 40 1 5.5494 5.6974 6.6817 41 1 4.3681 5.7567 5.3453 42 1 3.0360 4.3462 7.7182 43 1 6.7938 2.1751 3.8406 44 1 7.8930 3.1046 2.7983 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222458536.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:23 Heat of formation + Delta-G solvation = -44.184954 kcal Electronic energy + Delta-G solvation = -25191.026537 eV Core-core repulsion = 21723.217184 eV Total energy + Delta-G solvation = -3467.809353 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.41667 -39.85943 -38.59766 -36.54956 -34.79106 -34.65934 -32.86948 -31.29751 -30.06251 -29.02951 -26.60953 -26.47858 -25.02028 -23.86210 -21.73947 -21.38801 -20.84413 -19.66202 -18.52803 -18.37560 -17.50102 -17.33083 -16.97023 -16.69093 -16.05656 -15.90631 -15.65911 -15.57374 -15.12679 -14.47844 -14.39909 -14.08420 -13.98932 -13.69418 -13.30798 -13.22260 -13.06120 -13.04721 -12.95877 -12.66293 -12.53491 -12.30765 -12.06086 -11.90570 -11.64948 -11.38661 -11.26051 -11.12722 -10.99061 -10.66409 -10.63146 -10.27369 -9.49079 -8.80444 -7.86451 -5.15297 1.17127 1.33705 1.35025 1.47501 1.66676 1.96871 2.46658 2.99966 3.31741 3.51052 3.69307 3.89407 3.94493 4.03368 4.10950 4.13839 4.19412 4.25884 4.32171 4.41604 4.49579 4.52879 4.58660 4.63888 4.69270 4.75329 4.88038 4.92630 4.94911 5.04275 5.16335 5.19026 5.34054 5.55871 5.62675 5.65003 5.67910 5.72305 5.75214 5.83129 6.12111 6.24111 6.57037 7.15893 7.31406 7.84486 8.45235 9.23800 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012061 B = 0.006231 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.924358 B = 4492.260459 C = 5974.667093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.177 4.177 3 C 0.082 3.918 4 O -0.401 6.401 5 C 0.056 3.944 6 C 0.504 3.496 7 O -0.582 6.582 8 N -0.595 5.595 9 C 0.106 3.894 10 C -0.121 4.121 11 C -0.084 4.084 12 H 0.125 0.875 13 C -0.130 4.130 14 C 0.186 3.814 15 N -0.606 5.606 16 C -0.204 4.204 17 H 0.064 0.936 18 C -0.063 4.063 19 N -0.946 5.946 20 Si 0.950 3.050 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.289 1.289 24 C 0.141 3.859 25 H 0.027 0.973 26 C 0.118 3.882 27 H 0.117 0.883 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.121 0.879 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.032 0.968 38 H 0.066 0.934 39 H 0.083 0.917 40 H -0.003 1.003 41 H 0.005 0.995 42 H 0.243 0.757 43 H 0.046 0.954 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.126 4.747 -19.773 20.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.196 4.196 3 C 0.007 3.993 4 O -0.320 6.320 5 C -0.023 4.023 6 C 0.292 3.708 7 O -0.462 6.462 8 N -0.328 5.328 9 C -0.015 4.015 10 C -0.159 4.159 11 C -0.103 4.103 12 H 0.143 0.857 13 C -0.168 4.168 14 C 0.061 3.939 15 N -0.330 5.330 16 C -0.334 4.334 17 H 0.082 0.918 18 C -0.256 4.256 19 N -0.597 5.597 20 Si 0.781 3.219 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.215 1.215 24 C 0.034 3.966 25 H 0.044 0.956 26 C -0.006 4.006 27 H 0.135 0.865 28 H 0.129 0.871 29 H 0.125 0.875 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.139 0.861 34 H 0.127 0.873 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.051 0.949 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.015 0.985 41 H 0.023 0.977 42 H 0.052 0.948 43 H 0.065 0.935 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.042 3.967 -19.212 19.723 hybrid contribution -0.845 -0.995 1.373 1.895 sum 1.197 2.973 -17.839 18.124 Atomic orbital electron populations 1.24061 0.95000 1.03513 0.97903 1.22810 0.96410 0.98095 1.02240 1.21822 0.88312 0.96550 0.92623 1.88025 1.45565 1.36337 1.62091 1.22295 0.92323 0.88718 0.99008 1.20870 0.82645 0.83447 0.83802 1.90676 1.73308 1.29970 1.52209 1.47929 1.30687 1.14912 1.39300 1.22082 1.04818 0.80668 0.93969 1.21836 0.97661 0.99739 0.96645 1.22456 0.99611 0.93253 0.94957 0.85712 1.23042 0.99094 0.97691 0.97022 1.20832 0.95017 0.83213 0.94804 1.44320 1.35374 1.02125 1.51225 1.19098 1.13815 0.86302 1.14199 0.91812 1.25301 1.00780 0.98669 1.00802 1.70155 1.32820 1.22431 1.34281 0.85446 0.77486 0.80500 0.78462 1.21098 1.21760 1.21543 1.21053 0.90292 0.95020 0.90260 0.95578 1.21233 0.90147 0.99127 0.90053 0.86501 0.87143 0.87477 0.91615 0.89611 0.89246 0.86140 0.87283 0.88015 0.87576 0.94865 0.91574 0.89862 0.98503 0.97683 0.94779 0.93497 0.88490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 14.31 67.79 0.97 -2.18 16 2 C -0.18 -4.11 9.89 25.65 0.25 -3.85 16 3 C 0.08 1.90 6.35 71.24 0.45 2.35 16 4 O -0.40 -13.52 9.86 -129.94 -1.28 -14.80 16 5 C 0.06 1.57 4.78 71.24 0.34 1.92 16 6 C 0.50 19.64 7.79 87.66 0.68 20.32 16 7 O -0.58 -29.91 15.96 16.01 0.26 -29.65 16 8 N -0.59 -19.60 2.97 -823.16 -2.44 -22.04 16 9 C 0.11 2.21 6.35 86.20 0.55 2.76 16 10 C -0.12 -3.02 5.05 30.61 0.15 -2.86 16 11 C -0.08 -2.33 3.68 -9.34 -0.03 -2.36 16 12 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 13 C -0.13 -4.32 6.32 32.16 0.20 -4.12 16 14 C 0.19 9.12 4.58 86.86 0.40 9.52 16 15 N -0.61 -30.97 3.14 -676.11 -2.12 -33.09 16 16 C -0.20 -12.22 9.70 84.03 0.82 -11.40 16 17 H 0.06 4.03 6.49 -2.91 -0.02 4.01 16 18 C -0.06 -3.88 5.48 84.86 0.46 -3.41 16 19 N -0.95 -59.68 10.36 21.65 0.22 -59.45 16 20 Si 0.95 51.68 29.56 68.60 2.03 53.70 16 21 H -0.28 -14.94 7.11 99.48 0.71 -14.24 16 22 H -0.29 -15.56 7.11 99.48 0.71 -14.85 16 23 H -0.29 -16.21 7.11 99.48 0.71 -15.51 16 24 C 0.14 5.40 3.00 44.76 0.13 5.53 16 25 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 26 C 0.12 4.30 5.66 85.75 0.49 4.79 16 27 H 0.12 1.83 8.06 -2.91 -0.02 1.81 16 28 H 0.11 1.76 7.90 -2.91 -0.02 1.74 16 29 H 0.11 2.61 8.06 -2.91 -0.02 2.59 16 30 H 0.07 1.34 7.86 -2.39 -0.02 1.32 16 31 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.09 2.30 7.79 -2.39 -0.02 2.28 16 33 H 0.12 2.18 7.90 -2.39 -0.02 2.16 16 34 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.10 1.60 6.02 -2.39 -0.01 1.58 16 36 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.03 1.17 6.84 -2.39 -0.02 1.15 16 38 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.08 2.38 7.98 -2.39 -0.02 2.36 16 40 H 0.00 -0.18 7.46 -2.38 -0.02 -0.20 16 41 H 0.00 0.27 7.12 -2.39 -0.02 0.26 16 42 H 0.24 15.00 8.31 -92.71 -0.77 14.23 16 43 H 0.05 2.18 5.55 -2.39 -0.01 2.17 16 44 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -86.15 346.46 3.50 -82.65 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: 0.97 Total: 5.69 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 5.87 Total: 17.00 kcal Atomic # 7 Polarization: -110.24 SS G_CDS: -4.34 Total: -114.58 kcal Atomic # 8 Polarization: -43.43 SS G_CDS: -1.03 Total: -44.45 kcal Atomic # 14 Polarization: 51.68 SS G_CDS: 2.03 Total: 53.70 kcal Total: -86.15 3.50 -82.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222458536.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.461 kcal (2) G-P(sol) polarization free energy of solvation -86.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds