Wall clock time and date at job start Tue Mar 31 2020 08:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47562 * 14.87323 * 3 2 1 5 5 C 1.42903 * 114.00428 * 180.02562 * 4 3 2 6 6 C 1.52993 * 109.47102 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.46859 * 179.97438 * 6 5 4 8 8 O 1.21284 * 120.00188 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99960 * 180.02562 * 7 6 5 10 10 C 1.46507 * 119.99971 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.46955 * 34.99585 * 10 9 7 12 12 C 1.53002 * 109.46688 * 274.99603 * 10 9 7 13 13 C 1.52997 * 109.46817 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47127 * 60.00361 * 13 12 10 15 15 C 1.52999 * 109.46626 * 299.99539 * 14 13 12 16 16 C 1.52996 * 109.47258 * 154.99970 * 10 9 7 17 17 H 1.09000 * 109.47380 * 59.99156 * 16 10 9 18 18 N 1.46510 * 109.46858 * 299.99700 * 16 10 9 19 19 C 1.36936 * 119.99911 * 154.99804 * 18 16 10 20 20 H 1.08004 * 119.99844 * 0.02562 * 19 18 16 21 21 C 1.38806 * 120.00080 * 179.97438 * 19 18 16 22 22 N 1.31619 * 119.99818 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00022 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46898 * 90.00653 * 23 21 19 25 25 H 1.48505 * 109.47118 * 210.00295 * 23 21 19 26 26 H 1.48495 * 109.47439 * 330.00299 * 23 21 19 27 27 H 4.38450 * 5.44450 * 180.02562 * 4 1 2 28 28 H 1.09010 * 109.47055 * 254.87863 * 3 2 1 29 29 H 1.08997 * 109.47558 * 134.87650 * 3 2 1 30 30 H 1.09002 * 109.46777 * 60.00169 * 5 4 3 31 31 H 1.09002 * 109.46943 * 300.00217 * 5 4 3 32 32 H 1.09002 * 109.47333 * 60.00305 * 6 5 4 33 33 H 1.08994 * 109.47578 * 299.99897 * 6 5 4 34 34 H 0.96998 * 120.00021 * 359.97438 * 9 7 6 35 35 H 1.09002 * 109.47070 * 60.00104 * 12 10 9 36 36 H 1.08996 * 109.47407 * 299.99704 * 12 10 9 37 37 H 1.09001 * 109.47502 * 300.00518 * 13 12 10 38 38 H 1.09001 * 109.47289 * 180.02562 * 13 12 10 39 39 H 1.08993 * 109.46955 * 60.00011 * 14 13 12 40 40 H 1.09000 * 109.47050 * 179.97438 * 14 13 12 41 41 H 1.09002 * 109.46719 * 180.02562 * 15 14 13 42 42 H 1.08993 * 109.47839 * 299.99931 * 15 14 13 43 43 H 0.96994 * 119.99768 * 334.99990 * 18 16 10 44 44 H 0.97010 * 119.99788 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1229 -1.3012 -0.3458 5 6 4.5476 -1.4098 -0.3742 6 6 4.9427 -2.8381 -0.7543 7 6 6.4451 -2.9524 -0.7848 8 8 7.1321 -1.9866 -0.5274 9 7 7.0253 -4.1278 -1.0982 10 6 8.4858 -4.2390 -1.1274 11 1 8.9138 -3.6077 -0.3488 12 6 9.0045 -3.7863 -2.4937 13 6 10.5298 -3.9019 -2.5240 14 6 10.9360 -5.3568 -2.2808 15 6 10.4173 -5.8095 -0.9145 16 6 8.8914 -5.6941 -0.8845 17 1 8.4633 -6.3255 -1.6630 18 7 8.3947 -6.1276 0.4239 19 6 8.1671 -7.4564 0.6639 20 1 8.3541 -8.1849 -0.1112 21 6 7.6970 -7.8672 1.9036 22 7 7.4695 -6.9794 2.8483 23 14 7.3871 -9.6800 2.2312 24 1 8.6223 -10.3038 2.7702 25 1 6.2882 -9.8237 3.2197 26 1 7.0045 -10.3537 0.9644 27 1 -1.0499 -0.0003 -0.0003 28 1 3.0092 0.2689 0.9922 29 1 3.0090 0.7259 -0.7282 30 1 4.9498 -1.1709 0.6103 31 1 4.9504 -0.7137 -1.1100 32 1 4.5405 -3.0766 -1.7389 33 1 4.5399 -3.5345 -0.0189 34 1 6.4758 -4.9003 -1.3037 35 1 8.7155 -2.7497 -2.6668 36 1 8.5765 -4.4177 -3.2723 37 1 10.9576 -3.2703 -1.7454 38 1 10.8994 -3.5789 -3.4972 39 1 10.5083 -5.9884 -3.0594 40 1 12.0227 -5.4392 -2.3028 41 1 10.7070 -6.8458 -0.7410 42 1 10.8450 -5.1779 -0.1359 43 1 8.2271 -5.4733 1.1201 44 1 7.1406 -7.2665 3.7146 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226177977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:21 Heat of formation + Delta-G solvation = -36.056037 kcal Electronic energy + Delta-G solvation = -23546.765635 eV Core-core repulsion = 20079.308778 eV Total energy + Delta-G solvation = -3467.456857 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.81570 -38.35791 -37.65130 -34.05425 -33.73152 -33.62197 -31.56263 -31.14292 -29.22888 -27.75688 -26.99563 -23.91463 -23.65478 -21.82678 -21.06559 -20.06043 -19.42296 -18.60684 -17.35742 -17.10447 -16.47038 -16.06542 -15.85045 -15.11202 -14.99371 -14.81851 -14.09008 -13.96178 -13.62090 -13.43291 -13.18670 -12.99852 -12.78851 -12.54131 -12.19237 -12.07510 -11.63581 -11.51414 -11.09585 -10.92761 -10.84709 -10.76613 -10.73646 -10.60852 -10.57142 -10.33545 -10.17966 -9.78018 -9.69920 -9.65399 -9.50917 -8.93290 -8.58478 -7.00470 -5.79739 -3.09551 2.27043 2.58204 2.94629 3.35683 3.40737 3.45998 3.47841 3.90541 4.40525 4.54183 4.86048 5.02218 5.05029 5.07617 5.13180 5.20346 5.21085 5.34905 5.49953 5.51288 5.57486 5.67359 5.70880 5.79570 5.82021 5.87738 5.89130 5.95193 5.97176 6.10895 6.31385 6.44885 6.47287 6.50514 6.57490 6.85139 6.89597 6.97792 7.07716 7.33730 7.65893 7.90228 8.37436 8.55984 9.49297 10.05481 10.40746 11.42164 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010884 B = 0.003945 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.963876 B = 7096.095854 C = 9320.075865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.189 4.189 3 C 0.173 3.827 4 O -0.386 6.386 5 C 0.080 3.920 6 C -0.141 4.141 7 C 0.521 3.479 8 O -0.555 6.555 9 N -0.705 5.705 10 C 0.141 3.859 11 H 0.084 0.916 12 C -0.123 4.123 13 C -0.114 4.114 14 C -0.119 4.119 15 C -0.133 4.133 16 C 0.173 3.827 17 H 0.051 0.949 18 N -0.722 5.722 19 C -0.241 4.241 20 H 0.070 0.930 21 C -0.011 4.011 22 N -0.929 5.929 23 Si 0.905 3.095 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.282 1.282 27 H 0.221 0.779 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.405 0.595 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.385 0.615 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.749 11.298 -10.665 16.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.189 4.189 3 C 0.097 3.903 4 O -0.306 6.306 5 C 0.004 3.996 6 C -0.181 4.181 7 C 0.307 3.693 8 O -0.434 6.434 9 N -0.354 5.354 10 C 0.035 3.965 11 H 0.102 0.898 12 C -0.163 4.163 13 C -0.152 4.152 14 C -0.158 4.158 15 C -0.174 4.174 16 C 0.062 3.938 17 H 0.068 0.932 18 N -0.362 5.362 19 C -0.372 4.372 20 H 0.088 0.912 21 C -0.207 4.207 22 N -0.577 5.577 23 Si 0.736 3.264 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 H 0.238 0.762 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.239 0.761 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.219 0.781 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.417 11.626 -10.500 16.276 hybrid contribution -0.492 -1.086 0.544 1.311 sum -4.910 10.540 -9.956 15.307 Atomic orbital electron populations 1.24951 0.95878 0.98004 1.00900 1.22616 0.93965 1.01826 1.00511 1.19050 0.84533 0.86018 1.00684 1.87879 1.22057 1.29666 1.90990 1.22165 0.79336 0.96414 1.01710 1.21456 0.93231 0.98262 1.05143 1.20217 0.89683 0.83177 0.76255 1.90672 1.65393 1.37561 1.49770 1.45881 1.07950 1.12142 1.69429 1.21303 0.79265 0.98733 0.97155 0.89814 1.21869 0.95860 1.01219 0.97318 1.21473 0.95274 0.97310 1.01135 1.21581 0.99893 0.95784 0.98505 1.22228 0.98237 1.01608 0.95341 1.20478 0.92327 0.90850 0.90138 0.93151 1.42415 1.78014 1.05935 1.09868 1.19195 1.36790 0.84133 0.97093 0.91218 1.24736 1.02162 0.97410 0.96387 1.69672 1.51464 1.32157 1.04410 0.86231 0.77468 0.85108 0.77581 1.21794 1.21835 1.20790 0.76199 0.90596 0.90758 0.91888 0.92230 0.88333 0.87602 0.76076 0.91976 0.92045 0.91983 0.92413 0.92390 0.92696 0.91613 0.92468 0.78147 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 19.25 29.55 0.57 -1.14 16 2 C -0.19 -2.13 13.73 -37.13 -0.51 -2.64 16 3 C 0.17 1.82 6.41 34.37 0.22 2.04 16 4 O -0.39 -5.03 10.30 -35.23 -0.36 -5.39 16 5 C 0.08 1.01 5.23 37.15 0.19 1.21 16 6 C -0.14 -1.83 6.07 -27.89 -0.17 -2.00 16 7 C 0.52 8.29 7.79 -10.98 -0.09 8.21 16 8 O -0.55 -10.40 15.65 5.55 0.09 -10.32 16 9 N -0.71 -11.14 4.91 -53.80 -0.26 -11.40 16 10 C 0.14 2.34 1.98 -67.93 -0.13 2.20 16 11 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 12 C -0.12 -1.72 5.49 -26.73 -0.15 -1.86 16 13 C -0.11 -1.46 5.92 -26.73 -0.16 -1.62 16 14 C -0.12 -1.61 5.92 -26.73 -0.16 -1.77 16 15 C -0.13 -2.28 5.50 -26.71 -0.15 -2.43 16 16 C 0.17 3.20 2.30 -67.90 -0.16 3.04 16 17 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 18 N -0.72 -17.02 4.95 -53.40 -0.26 -17.28 16 19 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 20 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 21 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 22 N -0.93 -27.44 13.06 55.49 0.72 -26.71 16 23 Si 0.90 21.85 29.55 -169.99 -5.02 16.82 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H 0.22 1.22 7.80 -54.10 -0.42 0.79 16 28 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 31 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.40 6.05 8.60 -40.82 -0.35 5.69 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.38 10.04 7.80 -40.82 -0.32 9.72 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 370.67 15.07 5.59 5.59 Total: -1.00 -31.54 370.67 -7.81 -39.35 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -7.36 Total: 12.97 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -0.93 Total: -3.63 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: 0.20 Total: -55.39 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.28 Total: -15.71 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.54 -7.81 -39.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226177977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.297 kcal (2) G-P(sol) polarization free energy of solvation -31.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds