Wall clock time and date at job start Tue Mar 31 2020 08:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47562 * 14.87323 * 3 2 1 5 5 C 1.42903 * 114.00428 * 180.02562 * 4 3 2 6 6 C 1.52993 * 109.47102 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.46859 * 179.97438 * 6 5 4 8 8 O 1.21284 * 120.00188 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99960 * 180.02562 * 7 6 5 10 10 C 1.46507 * 119.99971 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.46955 * 34.99585 * 10 9 7 12 12 C 1.53002 * 109.46688 * 274.99603 * 10 9 7 13 13 C 1.52997 * 109.46817 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47127 * 60.00361 * 13 12 10 15 15 C 1.52999 * 109.46626 * 299.99539 * 14 13 12 16 16 C 1.52996 * 109.47258 * 154.99970 * 10 9 7 17 17 H 1.09000 * 109.47380 * 59.99156 * 16 10 9 18 18 N 1.46510 * 109.46858 * 299.99700 * 16 10 9 19 19 C 1.36936 * 119.99911 * 154.99804 * 18 16 10 20 20 H 1.08004 * 119.99844 * 0.02562 * 19 18 16 21 21 C 1.38806 * 120.00080 * 179.97438 * 19 18 16 22 22 N 1.31619 * 119.99818 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00022 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46898 * 90.00653 * 23 21 19 25 25 H 1.48505 * 109.47118 * 210.00295 * 23 21 19 26 26 H 1.48495 * 109.47439 * 330.00299 * 23 21 19 27 27 H 4.38450 * 5.44450 * 180.02562 * 4 1 2 28 28 H 1.09010 * 109.47055 * 254.87863 * 3 2 1 29 29 H 1.08997 * 109.47558 * 134.87650 * 3 2 1 30 30 H 1.09002 * 109.46777 * 60.00169 * 5 4 3 31 31 H 1.09002 * 109.46943 * 300.00217 * 5 4 3 32 32 H 1.09002 * 109.47333 * 60.00305 * 6 5 4 33 33 H 1.08994 * 109.47578 * 299.99897 * 6 5 4 34 34 H 0.96998 * 120.00021 * 359.97438 * 9 7 6 35 35 H 1.09002 * 109.47070 * 60.00104 * 12 10 9 36 36 H 1.08996 * 109.47407 * 299.99704 * 12 10 9 37 37 H 1.09001 * 109.47502 * 300.00518 * 13 12 10 38 38 H 1.09001 * 109.47289 * 180.02562 * 13 12 10 39 39 H 1.08993 * 109.46955 * 60.00011 * 14 13 12 40 40 H 1.09000 * 109.47050 * 179.97438 * 14 13 12 41 41 H 1.09002 * 109.46719 * 180.02562 * 15 14 13 42 42 H 1.08993 * 109.47839 * 299.99931 * 15 14 13 43 43 H 0.96994 * 119.99768 * 334.99990 * 18 16 10 44 44 H 0.97010 * 119.99788 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1229 -1.3012 -0.3458 5 6 4.5476 -1.4098 -0.3742 6 6 4.9427 -2.8381 -0.7543 7 6 6.4451 -2.9524 -0.7848 8 8 7.1321 -1.9866 -0.5274 9 7 7.0253 -4.1278 -1.0982 10 6 8.4858 -4.2390 -1.1274 11 1 8.9138 -3.6077 -0.3488 12 6 9.0045 -3.7863 -2.4937 13 6 10.5298 -3.9019 -2.5240 14 6 10.9360 -5.3568 -2.2808 15 6 10.4173 -5.8095 -0.9145 16 6 8.8914 -5.6941 -0.8845 17 1 8.4633 -6.3255 -1.6630 18 7 8.3947 -6.1276 0.4239 19 6 8.1671 -7.4564 0.6639 20 1 8.3541 -8.1849 -0.1112 21 6 7.6970 -7.8672 1.9036 22 7 7.4695 -6.9794 2.8483 23 14 7.3871 -9.6800 2.2312 24 1 8.6223 -10.3038 2.7702 25 1 6.2882 -9.8237 3.2197 26 1 7.0045 -10.3537 0.9644 27 1 -1.0499 -0.0003 -0.0003 28 1 3.0092 0.2689 0.9922 29 1 3.0090 0.7259 -0.7282 30 1 4.9498 -1.1709 0.6103 31 1 4.9504 -0.7137 -1.1100 32 1 4.5405 -3.0766 -1.7389 33 1 4.5399 -3.5345 -0.0189 34 1 6.4758 -4.9003 -1.3037 35 1 8.7155 -2.7497 -2.6668 36 1 8.5765 -4.4177 -3.2723 37 1 10.9576 -3.2703 -1.7454 38 1 10.8994 -3.5789 -3.4972 39 1 10.5083 -5.9884 -3.0594 40 1 12.0227 -5.4392 -2.3028 41 1 10.7070 -6.8458 -0.7410 42 1 10.8450 -5.1779 -0.1359 43 1 8.2271 -5.4733 1.1201 44 1 7.1406 -7.2665 3.7146 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226177977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:20 Heat of formation + Delta-G solvation = -56.870419 kcal Electronic energy + Delta-G solvation = -23547.668215 eV Core-core repulsion = 20079.308778 eV Total energy + Delta-G solvation = -3468.359437 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.12816 -39.48850 -38.82720 -35.80738 -35.07865 -34.44547 -32.99339 -32.59255 -30.49766 -29.29374 -27.89036 -25.66407 -24.88960 -23.09948 -22.44962 -21.36173 -20.69961 -19.43324 -19.10921 -18.34099 -17.46092 -17.41917 -17.00770 -16.60127 -16.13024 -15.92215 -15.60754 -15.41787 -14.97829 -14.62564 -14.60246 -14.36850 -14.05657 -13.68005 -13.55768 -13.41191 -12.91903 -12.80775 -12.67675 -12.48341 -12.23542 -12.15219 -12.02361 -11.99486 -11.63436 -11.55242 -11.46356 -11.42373 -11.12065 -10.99590 -10.72571 -10.58137 -9.91833 -8.98413 -7.90612 -5.19274 1.43981 1.49212 1.49890 1.58071 1.66623 1.81500 2.22912 2.57700 3.00228 3.43005 3.59881 3.69661 3.76620 3.85574 4.03869 4.12482 4.22232 4.28024 4.31453 4.34335 4.43533 4.45449 4.48621 4.56509 4.61797 4.71684 4.78797 4.83994 4.97113 5.02184 5.03501 5.19456 5.25833 5.31036 5.32714 5.48448 5.54345 5.58784 5.70411 6.06346 6.29379 6.58941 6.61867 7.28165 7.36288 8.10349 8.34235 9.32386 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010884 B = 0.003945 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.963876 B = 7096.095854 C = 9320.075865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.240 4.240 3 C 0.166 3.834 4 O -0.402 6.402 5 C 0.086 3.914 6 C -0.133 4.133 7 C 0.518 3.482 8 O -0.586 6.586 9 N -0.704 5.704 10 C 0.148 3.852 11 H 0.053 0.947 12 C -0.114 4.114 13 C -0.111 4.111 14 C -0.110 4.110 15 C -0.129 4.129 16 C 0.171 3.829 17 H 0.059 0.941 18 N -0.732 5.732 19 C -0.230 4.230 20 H 0.079 0.921 21 C -0.074 4.074 22 N -0.969 5.969 23 Si 0.967 3.033 24 H -0.293 1.293 25 H -0.301 1.301 26 H -0.266 1.266 27 H 0.255 0.745 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.410 0.590 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.049 0.951 42 H 0.040 0.960 43 H 0.368 0.632 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.174 11.046 -13.042 17.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.240 4.240 3 C 0.091 3.909 4 O -0.322 6.322 5 C 0.009 3.991 6 C -0.173 4.173 7 C 0.306 3.694 8 O -0.467 6.467 9 N -0.353 5.353 10 C 0.042 3.958 11 H 0.071 0.929 12 C -0.153 4.153 13 C -0.149 4.149 14 C -0.148 4.148 15 C -0.169 4.169 16 C 0.063 3.937 17 H 0.077 0.923 18 N -0.371 5.371 19 C -0.362 4.362 20 H 0.097 0.903 21 C -0.266 4.266 22 N -0.620 5.620 23 Si 0.798 3.202 24 H -0.221 1.221 25 H -0.228 1.228 26 H -0.191 1.191 27 H 0.272 0.728 28 H 0.101 0.899 29 H 0.110 0.890 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.120 0.880 34 H 0.245 0.755 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.200 0.800 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.826 11.360 -12.943 17.885 hybrid contribution -0.374 -0.958 1.245 1.614 sum -5.199 10.402 -11.699 16.495 Atomic orbital electron populations 1.25871 0.96793 0.95964 0.99057 1.23087 0.94864 1.03744 1.02334 1.19248 0.84719 0.85289 1.01676 1.87835 1.21849 1.31357 1.91179 1.22061 0.79497 0.96265 1.01284 1.21408 0.90865 0.98538 1.06449 1.20693 0.90823 0.82604 0.75324 1.90654 1.66373 1.38569 1.51122 1.45900 1.07751 1.12418 1.69242 1.21157 0.79791 0.96673 0.98146 0.92922 1.21804 0.96767 1.01220 0.95532 1.21481 0.94247 0.96681 1.02482 1.21515 1.00952 0.96288 0.96033 1.22103 0.96876 1.00389 0.97578 1.20694 0.93168 0.92065 0.87813 0.92314 1.42584 1.78317 1.04821 1.11329 1.19572 1.34322 0.85385 0.96872 0.90311 1.25477 1.03451 1.01095 0.96626 1.69839 1.53686 1.33911 1.04612 0.85223 0.76638 0.80803 0.77582 1.22073 1.22800 1.19074 0.72843 0.89880 0.89023 0.93103 0.91463 0.85795 0.88042 0.75489 0.92256 0.90255 0.92883 0.89466 0.90943 0.90958 0.93247 0.94159 0.80027 0.94368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 19.25 74.32 1.43 -1.34 16 2 C -0.24 -5.25 13.73 31.12 0.43 -4.83 16 3 C 0.17 3.44 6.41 70.17 0.45 3.89 16 4 O -0.40 -10.35 10.30 -148.98 -1.53 -11.88 16 5 C 0.09 2.15 5.23 71.98 0.38 2.53 16 6 C -0.13 -3.39 6.07 29.85 0.18 -3.21 16 7 C 0.52 16.53 7.79 87.66 0.68 17.21 16 8 O -0.59 -22.31 15.65 -3.04 -0.05 -22.36 16 9 N -0.70 -22.06 4.91 -442.52 -2.17 -24.23 16 10 C 0.15 4.87 1.98 44.99 0.09 4.96 16 11 H 0.05 2.08 7.58 -2.39 -0.02 2.06 16 12 C -0.11 -2.94 5.49 30.59 0.17 -2.77 16 13 C -0.11 -2.54 5.92 30.60 0.18 -2.36 16 14 C -0.11 -2.66 5.92 30.60 0.18 -2.48 16 15 C -0.13 -4.32 5.50 30.61 0.17 -4.15 16 16 C 0.17 6.26 2.30 45.00 0.10 6.36 16 17 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 18 N -0.73 -34.96 4.95 -322.85 -1.60 -36.56 16 19 C -0.23 -12.06 9.93 84.03 0.83 -11.23 16 20 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16 21 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 22 N -0.97 -58.77 13.06 21.65 0.28 -58.49 16 23 Si 0.97 45.24 29.55 68.60 2.03 47.26 16 24 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 25 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 27 H 0.26 2.06 7.80 -4.42 -0.03 2.02 16 28 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.05 1.38 8.10 -2.39 -0.02 1.36 16 31 H 0.07 1.57 8.10 -2.39 -0.02 1.55 16 32 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.41 11.96 8.60 -92.71 -0.80 11.17 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.37 19.89 7.80 -92.71 -0.72 19.17 16 44 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 Total: -1.00 -69.08 370.67 2.16 -66.92 By element: Atomic # 1 Polarization: 40.96 SS G_CDS: -0.54 Total: 40.42 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 5.74 Total: -1.08 kcal Atomic # 7 Polarization: -115.79 SS G_CDS: -3.49 Total: -119.28 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -1.58 Total: -34.24 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -69.08 2.16 -66.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226177977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.050 kcal (2) G-P(sol) polarization free energy of solvation -69.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds