Wall clock time and date at job start Tue Mar 31 2020 06:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47049 * 2 1 4 4 N 1.46894 * 109.47051 * 179.97438 * 3 2 1 5 5 C 1.46903 * 111.00268 * 298.30368 * 4 3 2 6 6 C 1.50701 * 109.46636 * 293.26454 * 5 4 3 7 7 H 1.07997 * 120.00595 * 354.96777 * 6 5 4 8 8 C 1.37880 * 119.99651 * 174.97217 * 6 5 4 9 9 N 1.31514 * 119.99913 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99953 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47165 * 90.00022 * 10 8 6 12 12 H 1.48500 * 109.46940 * 209.99610 * 10 8 6 13 13 H 1.48491 * 109.46829 * 329.99706 * 10 8 6 14 14 C 1.46898 * 111.00166 * 62.25792 * 4 3 2 15 15 C 1.50697 * 109.47245 * 66.04221 * 14 4 3 16 16 C 1.35482 * 126.08369 * 270.03064 * 15 14 4 17 17 N 1.34957 * 108.99124 * 179.71243 * 16 15 14 18 18 H 0.96998 * 125.64141 * 180.27781 * 17 16 15 19 19 C 1.37706 * 108.72543 * 0.43146 * 17 16 15 20 20 C 1.46488 * 126.26356 * 179.83235 * 19 17 16 21 21 O 1.21616 * 120.00075 * 179.69190 * 20 19 17 22 22 O 1.34900 * 119.99857 * 359.69150 * 20 19 17 23 23 C 1.45198 * 116.99934 * 179.97438 * 22 20 19 24 24 C 1.52993 * 109.47339 * 180.02562 * 23 22 20 25 25 C 1.37994 * 107.47180 * 359.57428 * 19 17 16 26 26 H 1.08997 * 109.47088 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47069 * 299.99947 * 1 2 3 28 28 H 1.08997 * 109.46871 * 60.00086 * 1 2 3 29 29 H 1.09000 * 109.47069 * 240.00053 * 2 1 3 30 30 H 1.08997 * 109.46871 * 119.99914 * 2 1 3 31 31 H 1.09006 * 109.47464 * 59.95734 * 3 2 1 32 32 H 1.09006 * 109.47236 * 299.95639 * 3 2 1 33 33 H 1.08997 * 109.46985 * 53.26489 * 5 4 3 34 34 H 1.09000 * 109.47195 * 173.26432 * 5 4 3 35 35 H 0.97002 * 119.99640 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.47240 * 306.04757 * 14 4 3 37 37 H 1.09002 * 109.47848 * 186.04489 * 14 4 3 38 38 H 1.08004 * 125.50596 * 359.97130 * 16 15 14 39 39 H 1.09000 * 109.47133 * 60.00280 * 23 22 20 40 40 H 1.08998 * 109.47210 * 300.00513 * 23 22 20 41 41 H 1.08998 * 109.47227 * 300.00305 * 24 23 22 42 42 H 1.09000 * 109.46941 * 59.99965 * 24 23 22 43 43 H 1.09002 * 109.47705 * 180.02562 * 24 23 22 44 44 H 1.08001 * 126.51584 * 180.28355 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0350 0.7924 1.2084 6 6 3.6905 1.6242 2.4170 7 1 3.2084 2.5826 2.2934 8 6 3.9911 1.1616 3.6806 9 7 4.5778 -0.0058 3.8311 10 14 3.5635 2.1922 5.1787 11 1 2.1977 1.8436 5.6460 12 1 4.5418 1.9201 6.2623 13 1 3.6112 3.6321 4.8189 14 6 4.0360 0.8039 -1.2128 15 6 3.6779 1.6383 -2.4155 16 6 2.5540 1.5201 -3.1628 17 7 2.5830 2.4414 -4.1485 18 1 1.8960 2.5718 -4.8207 19 6 3.7509 3.1635 -4.0444 20 6 4.1746 4.2571 -4.9222 21 8 5.2322 4.8230 -4.7215 22 8 3.3916 4.6364 -5.9531 23 6 3.8743 5.7273 -6.7809 24 6 2.8597 6.0140 -7.8895 25 6 4.4463 2.6724 -2.9584 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6761 1.9566 0.8896 32 1 1.6773 1.9561 -0.8904 33 1 3.5913 -0.1980 1.3105 34 1 5.1180 0.6989 1.1283 35 1 4.7889 -0.3314 4.7202 36 1 3.6017 -0.1903 -1.3181 37 1 5.1202 0.7207 -1.1381 38 1 1.7608 0.8067 -2.9941 39 1 4.8303 5.4506 -7.2255 40 1 4.0036 6.6191 -6.1676 41 1 2.7301 5.1224 -8.5028 42 1 1.9040 6.2909 -7.4445 43 1 3.2222 6.8327 -8.5112 44 1 5.4022 3.0210 -2.5963 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234945126.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:51 Heat of formation + Delta-G solvation = -46.873888 kcal Electronic energy + Delta-G solvation = -23532.911509 eV Core-core repulsion = 20064.985555 eV Total energy + Delta-G solvation = -3467.925954 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.38448 -39.96459 -37.30716 -36.64069 -32.76768 -32.56452 -32.01449 -30.92044 -29.62602 -27.09212 -26.07304 -24.49146 -23.48567 -22.57464 -22.04704 -20.35711 -19.96230 -19.32313 -17.92547 -17.12754 -16.74227 -16.11175 -15.62106 -15.09389 -14.75056 -14.52507 -14.23942 -13.80798 -13.77034 -13.50830 -13.27246 -13.23249 -13.01826 -12.48954 -12.42552 -12.20394 -11.92637 -11.85880 -11.48987 -11.14478 -10.96284 -10.90922 -10.78555 -10.78215 -10.68599 -10.63144 -10.40046 -9.90139 -9.66765 -9.16352 -8.71243 -8.37456 -8.14735 -7.02366 -5.96567 -3.96777 1.26257 2.45530 2.72717 3.17036 3.22825 3.35324 3.41884 3.47030 4.48923 4.60663 4.61265 4.74696 4.95537 5.09210 5.23492 5.32703 5.38550 5.42396 5.42881 5.47725 5.54343 5.57210 5.60853 5.85907 5.90713 6.11442 6.14096 6.23278 6.26270 6.32296 6.42140 6.46024 6.53846 6.79801 6.89688 6.99882 7.03725 7.39436 7.42902 7.50246 7.70008 7.89333 8.19238 8.30727 8.65192 9.11809 9.67089 11.13933 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020051 B = 0.003195 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.097097 B = 8761.844938 C = 9399.462230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.165 4.165 3 C 0.068 3.932 4 N -0.530 5.530 5 C 0.188 3.812 6 C -0.501 4.501 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.894 3.106 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.117 3.883 15 C -0.152 4.152 16 C 0.040 3.960 17 N -0.530 5.530 18 H 0.419 0.581 19 C -0.063 4.063 20 C 0.539 3.461 21 O -0.503 6.503 22 O -0.367 6.367 23 C 0.064 3.936 24 C -0.152 4.152 25 C -0.065 4.065 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.043 0.957 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.003 0.997 34 H 0.025 0.975 35 H 0.260 0.740 36 H 0.035 0.965 37 H 0.075 0.925 38 H 0.170 0.830 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.852 4.692 -21.225 22.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.204 4.204 3 C -0.061 4.061 4 N -0.253 5.253 5 C 0.063 3.937 6 C -0.540 4.540 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.722 3.278 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.011 4.011 15 C -0.158 4.158 16 C -0.097 4.097 17 N -0.126 5.126 18 H 0.257 0.743 19 C -0.173 4.173 20 C 0.385 3.615 21 O -0.391 6.391 22 O -0.286 6.286 23 C -0.009 4.009 24 C -0.209 4.209 25 C -0.092 4.092 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.021 0.979 34 H 0.043 0.957 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.093 0.907 38 H 0.187 0.813 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.362 5.344 -21.183 22.754 hybrid contribution -0.737 -0.210 0.594 0.970 sum -7.099 5.133 -20.588 22.375 Atomic orbital electron populations 1.21656 0.96686 1.00561 1.01126 1.22197 0.95303 1.00709 1.02164 1.22022 0.88709 0.94091 1.01263 1.62313 1.06283 1.54808 1.01904 1.19792 0.95065 0.93239 0.85564 1.21159 1.38460 1.04327 0.90027 0.91993 1.24964 0.95527 0.95121 0.98989 1.69956 1.42460 1.18839 1.22736 0.86558 0.77940 0.80789 0.82505 1.20870 1.21361 1.19802 1.20442 1.00027 0.93212 0.87454 1.19544 0.95560 1.01210 0.99529 1.21876 1.00781 0.95939 0.91149 1.41712 1.17437 1.27514 1.25896 0.74336 1.19171 0.92652 1.01791 1.03660 1.19824 0.81942 0.81311 0.78382 1.90901 1.23173 1.53887 1.71116 1.86547 1.50237 1.51452 1.40318 1.23002 0.98238 0.88030 0.91672 1.21810 0.99425 1.02519 0.97175 1.21311 0.99962 0.95434 0.92468 0.93691 0.92739 0.93738 0.93073 0.90544 0.90459 0.92938 0.97942 0.95721 0.93062 0.94717 0.90689 0.81279 0.91122 0.91058 0.91560 0.91489 0.90153 0.83160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.16 -2.77 5.28 -26.73 -0.14 -2.91 16 3 C 0.07 1.27 4.91 -3.83 -0.02 1.25 16 4 N -0.53 -11.14 4.69 -237.52 -1.11 -12.25 16 5 C 0.19 4.78 4.52 -4.97 -0.02 4.75 16 6 C -0.50 -13.94 8.40 -34.44 -0.29 -14.23 16 7 H 0.06 1.73 7.35 -52.49 -0.39 1.35 16 8 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 10 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.12 2.06 5.24 -4.98 -0.03 2.03 16 15 C -0.15 -2.32 4.99 -105.02 -0.52 -2.84 16 16 C 0.04 0.49 10.34 -17.16 -0.18 0.31 16 17 N -0.53 -5.88 6.07 -9.53 -0.06 -5.94 16 18 H 0.42 3.33 8.96 -40.82 -0.37 2.96 16 19 C -0.06 -0.88 7.10 -81.99 -0.58 -1.46 16 20 C 0.54 7.60 7.93 34.05 0.27 7.87 16 21 O -0.50 -8.39 16.68 -19.35 -0.32 -8.71 16 22 O -0.37 -4.19 10.23 -41.04 -0.42 -4.61 16 23 C 0.06 0.57 6.20 37.15 0.23 0.80 16 24 C -0.15 -0.89 10.29 37.15 0.38 -0.50 16 25 C -0.06 -1.01 10.60 -39.09 -0.41 -1.43 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.78 6.33 -51.93 -0.33 0.45 16 30 H 0.08 1.55 6.30 -51.93 -0.33 1.23 16 31 H 0.08 1.62 6.97 -51.93 -0.36 1.26 16 32 H 0.05 0.88 6.19 -51.93 -0.32 0.55 16 33 H 0.00 0.08 6.02 -51.93 -0.31 -0.24 16 34 H 0.02 0.68 7.92 -51.93 -0.41 0.26 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.03 0.58 6.07 -51.93 -0.32 0.26 16 37 H 0.07 1.35 7.92 -51.93 -0.41 0.94 16 38 H 0.17 1.66 8.06 -52.48 -0.42 1.24 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.15 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 362.58 15.07 5.46 5.46 Total: -1.00 -32.05 362.58 -8.68 -40.73 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.90 Total: 0.94 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -1.04 Total: -6.53 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: -0.43 Total: -44.02 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.74 Total: -13.31 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.05 -8.68 -40.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234945126.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.146 kcal (2) G-P(sol) polarization free energy of solvation -32.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds