Wall clock time and date at job start Tue Mar 31 2020 06:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47049 * 2 1 4 4 N 1.46894 * 109.47051 * 179.97438 * 3 2 1 5 5 C 1.46903 * 111.00268 * 298.30368 * 4 3 2 6 6 C 1.50701 * 109.46636 * 293.26454 * 5 4 3 7 7 H 1.07997 * 120.00595 * 354.96777 * 6 5 4 8 8 C 1.37880 * 119.99651 * 174.97217 * 6 5 4 9 9 N 1.31514 * 119.99913 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99953 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47165 * 90.00022 * 10 8 6 12 12 H 1.48500 * 109.46940 * 209.99610 * 10 8 6 13 13 H 1.48491 * 109.46829 * 329.99706 * 10 8 6 14 14 C 1.46898 * 111.00166 * 62.25792 * 4 3 2 15 15 C 1.50697 * 109.47245 * 66.04221 * 14 4 3 16 16 C 1.35482 * 126.08369 * 270.03064 * 15 14 4 17 17 N 1.34957 * 108.99124 * 179.71243 * 16 15 14 18 18 H 0.96998 * 125.64141 * 180.27781 * 17 16 15 19 19 C 1.37706 * 108.72543 * 0.43146 * 17 16 15 20 20 C 1.46488 * 126.26356 * 179.83235 * 19 17 16 21 21 O 1.21616 * 120.00075 * 179.69190 * 20 19 17 22 22 O 1.34900 * 119.99857 * 359.69150 * 20 19 17 23 23 C 1.45198 * 116.99934 * 179.97438 * 22 20 19 24 24 C 1.52993 * 109.47339 * 180.02562 * 23 22 20 25 25 C 1.37994 * 107.47180 * 359.57428 * 19 17 16 26 26 H 1.08997 * 109.47088 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47069 * 299.99947 * 1 2 3 28 28 H 1.08997 * 109.46871 * 60.00086 * 1 2 3 29 29 H 1.09000 * 109.47069 * 240.00053 * 2 1 3 30 30 H 1.08997 * 109.46871 * 119.99914 * 2 1 3 31 31 H 1.09006 * 109.47464 * 59.95734 * 3 2 1 32 32 H 1.09006 * 109.47236 * 299.95639 * 3 2 1 33 33 H 1.08997 * 109.46985 * 53.26489 * 5 4 3 34 34 H 1.09000 * 109.47195 * 173.26432 * 5 4 3 35 35 H 0.97002 * 119.99640 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.47240 * 306.04757 * 14 4 3 37 37 H 1.09002 * 109.47848 * 186.04489 * 14 4 3 38 38 H 1.08004 * 125.50596 * 359.97130 * 16 15 14 39 39 H 1.09000 * 109.47133 * 60.00280 * 23 22 20 40 40 H 1.08998 * 109.47210 * 300.00513 * 23 22 20 41 41 H 1.08998 * 109.47227 * 300.00305 * 24 23 22 42 42 H 1.09000 * 109.46941 * 59.99965 * 24 23 22 43 43 H 1.09002 * 109.47705 * 180.02562 * 24 23 22 44 44 H 1.08001 * 126.51584 * 180.28355 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0350 0.7924 1.2084 6 6 3.6905 1.6242 2.4170 7 1 3.2084 2.5826 2.2934 8 6 3.9911 1.1616 3.6806 9 7 4.5778 -0.0058 3.8311 10 14 3.5635 2.1922 5.1787 11 1 2.1977 1.8436 5.6460 12 1 4.5418 1.9201 6.2623 13 1 3.6112 3.6321 4.8189 14 6 4.0360 0.8039 -1.2128 15 6 3.6779 1.6383 -2.4155 16 6 2.5540 1.5201 -3.1628 17 7 2.5830 2.4414 -4.1485 18 1 1.8960 2.5718 -4.8207 19 6 3.7509 3.1635 -4.0444 20 6 4.1746 4.2571 -4.9222 21 8 5.2322 4.8230 -4.7215 22 8 3.3916 4.6364 -5.9531 23 6 3.8743 5.7273 -6.7809 24 6 2.8597 6.0140 -7.8895 25 6 4.4463 2.6724 -2.9584 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6761 1.9566 0.8896 32 1 1.6773 1.9561 -0.8904 33 1 3.5913 -0.1980 1.3105 34 1 5.1180 0.6989 1.1283 35 1 4.7889 -0.3314 4.7202 36 1 3.6017 -0.1903 -1.3181 37 1 5.1202 0.7207 -1.1381 38 1 1.7608 0.8067 -2.9941 39 1 4.8303 5.4506 -7.2255 40 1 4.0036 6.6191 -6.1676 41 1 2.7301 5.1224 -8.5028 42 1 1.9040 6.2909 -7.4445 43 1 3.2222 6.8327 -8.5112 44 1 5.4022 3.0210 -2.5963 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234945126.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:50 Heat of formation + Delta-G solvation = -67.259477 kcal Electronic energy + Delta-G solvation = -23533.795495 eV Core-core repulsion = 20064.985555 eV Total energy + Delta-G solvation = -3468.809940 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.46793 -41.00505 -38.88521 -37.67285 -34.82756 -33.81592 -32.77953 -32.26161 -30.76666 -28.93612 -27.44011 -25.76163 -24.89329 -23.60017 -23.38730 -21.57686 -21.23293 -20.52880 -19.13228 -18.26626 -18.13202 -17.66590 -16.90336 -16.54759 -16.40303 -15.78922 -15.50795 -15.08825 -15.03083 -14.53686 -14.47019 -14.45135 -14.14296 -13.73482 -13.63557 -13.41743 -13.12246 -12.96635 -12.74590 -12.61727 -12.55551 -12.44097 -12.38298 -12.16051 -12.15021 -11.84223 -11.72765 -11.57842 -11.24152 -11.17958 -10.54778 -9.86169 -9.27072 -8.69993 -8.13855 -6.22714 0.17172 1.41107 1.42675 1.51212 1.53817 1.61702 2.07456 2.22275 2.44081 3.17868 3.65981 3.79593 3.99410 4.06508 4.09933 4.17446 4.24861 4.29164 4.33574 4.35293 4.59016 4.61991 4.73183 4.82623 4.89140 4.91456 4.98235 5.01968 5.09427 5.14316 5.18144 5.24243 5.28362 5.35343 5.42141 5.54306 5.62585 5.69467 5.75610 5.87496 6.16776 6.50616 6.54155 6.65793 6.80774 6.95437 7.46314 8.95758 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020051 B = 0.003195 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.097097 B = 8761.844938 C = 9399.462230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.156 4.156 3 C 0.072 3.928 4 N -0.544 5.544 5 C 0.205 3.795 6 C -0.515 4.515 7 H 0.056 0.944 8 C 0.003 3.997 9 N -0.933 5.933 10 Si 0.961 3.039 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.269 1.269 14 C 0.123 3.877 15 C -0.178 4.178 16 C 0.071 3.929 17 N -0.505 5.505 18 H 0.439 0.561 19 C -0.068 4.068 20 C 0.542 3.458 21 O -0.538 6.538 22 O -0.359 6.359 23 C 0.054 3.946 24 C -0.144 4.144 25 C -0.090 4.090 26 H 0.058 0.942 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.032 0.968 31 H 0.047 0.953 32 H 0.081 0.919 33 H -0.015 1.015 34 H -0.007 1.007 35 H 0.262 0.738 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.207 0.793 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.101 0.899 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.555 5.216 -23.174 25.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.195 4.195 3 C -0.056 4.056 4 N -0.267 5.267 5 C 0.079 3.921 6 C -0.553 4.553 7 H 0.074 0.926 8 C -0.195 4.195 9 N -0.574 5.574 10 Si 0.786 3.214 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.194 1.194 14 C -0.005 4.005 15 C -0.184 4.184 16 C -0.069 4.069 17 N -0.102 5.102 18 H 0.280 0.720 19 C -0.178 4.178 20 C 0.390 3.610 21 O -0.428 6.428 22 O -0.276 6.276 23 C -0.019 4.019 24 C -0.201 4.201 25 C -0.117 4.117 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.002 0.998 34 H 0.011 0.989 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.223 0.777 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.119 0.881 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.107 5.883 -23.186 25.596 hybrid contribution 0.112 -0.353 1.086 1.147 sum -8.995 5.530 -22.101 24.494 Atomic orbital electron populations 1.21619 0.93947 1.01817 1.02075 1.22066 0.97634 0.98812 1.00966 1.21998 0.87042 0.95409 1.01138 1.62190 1.08063 1.54927 1.01546 1.19401 0.93024 0.92416 0.87284 1.21438 1.38277 1.04285 0.91322 0.92620 1.25811 0.95326 0.96261 1.02054 1.70077 1.43437 1.20407 1.23521 0.85506 0.78061 0.79132 0.78677 1.19750 1.20880 1.19355 1.20327 0.98992 0.94167 0.86979 1.19284 0.97456 1.01916 0.99784 1.22217 0.99879 0.95288 0.89555 1.41650 1.16733 1.26087 1.25694 0.71958 1.19018 0.93427 1.02099 1.03246 1.19856 0.81550 0.80933 0.78680 1.90885 1.24718 1.55089 1.72133 1.86543 1.49466 1.52081 1.39556 1.23343 0.99517 0.87023 0.92043 1.21825 0.98600 1.03525 0.96161 1.21280 1.00047 0.96498 0.93863 0.92320 0.93966 0.90615 0.91027 0.94960 0.93393 0.90034 0.99778 0.98915 0.92885 0.93473 0.92506 0.77666 0.91161 0.91454 0.90987 0.91174 0.88085 0.85058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.91 71.98 0.71 -2.71 16 2 C -0.16 -5.06 5.28 30.60 0.16 -4.90 16 3 C 0.07 2.65 4.91 86.30 0.42 3.07 16 4 N -0.54 -23.40 4.69 -905.37 -4.24 -27.65 16 5 C 0.20 10.92 4.52 85.56 0.39 11.31 16 6 C -0.51 -29.63 8.40 25.60 0.21 -29.42 16 7 H 0.06 3.21 7.35 -2.91 -0.02 3.18 16 8 C 0.00 0.18 5.46 84.66 0.46 0.64 16 9 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 10 Si 0.96 45.27 29.54 68.60 2.03 47.30 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 13 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 14 C 0.12 4.38 5.24 85.56 0.45 4.83 16 15 C -0.18 -5.24 4.99 -20.12 -0.10 -5.34 16 16 C 0.07 1.46 10.34 83.58 0.86 2.32 16 17 N -0.51 -9.48 6.07 -184.05 -1.12 -10.60 16 18 H 0.44 5.01 8.96 -92.71 -0.83 4.18 16 19 C -0.07 -1.80 7.10 40.31 0.29 -1.51 16 20 C 0.54 14.90 7.93 69.97 0.55 15.45 16 21 O -0.54 -18.21 16.68 19.46 0.32 -17.88 16 22 O -0.36 -7.55 10.23 -58.15 -0.60 -8.14 16 23 C 0.05 0.88 6.20 71.98 0.45 1.32 16 24 C -0.14 -1.30 10.29 71.98 0.74 -0.56 16 25 C -0.09 -2.83 10.60 22.59 0.24 -2.59 16 26 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 2.01 6.33 -2.39 -0.02 2.00 16 30 H 0.03 1.33 6.30 -2.39 -0.02 1.32 16 31 H 0.05 2.03 6.97 -2.38 -0.02 2.01 16 32 H 0.08 2.50 6.19 -2.38 -0.01 2.48 16 33 H -0.02 -0.87 6.02 -2.39 -0.01 -0.88 16 34 H -0.01 -0.42 7.92 -2.39 -0.02 -0.44 16 35 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 36 H 0.05 1.54 6.07 -2.39 -0.01 1.53 16 37 H 0.06 2.17 7.92 -2.39 -0.02 2.15 16 38 H 0.21 2.81 8.06 -2.91 -0.02 2.78 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -72.93 362.58 2.69 -70.24 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.17 Total: 11.23 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: 5.84 Total: -8.09 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -5.08 Total: -94.65 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.27 Total: -26.03 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -72.93 2.69 -70.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234945126.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.980 kcal (2) G-P(sol) polarization free energy of solvation -72.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds