Wall clock time and date at job start Tue Mar 31 2020 06:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47103 * 2 1 4 4 N 1.46902 * 109.47254 * 185.16012 * 3 2 1 5 5 C 1.46906 * 111.00080 * 163.15993 * 4 3 2 6 6 C 1.50703 * 109.47028 * 293.95610 * 5 4 3 7 7 H 1.08001 * 119.99858 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00056 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00462 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99570 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47397 * 90.00104 * 10 8 6 12 12 H 1.48506 * 109.47150 * 209.99704 * 10 8 6 13 13 H 1.48493 * 109.47452 * 329.99972 * 10 8 6 14 14 C 1.46900 * 111.00030 * 287.11501 * 4 3 2 15 15 C 1.50707 * 109.47006 * 163.82357 * 14 4 3 16 16 C 1.38549 * 120.72471 * 275.97419 * 15 14 4 17 17 C 1.38783 * 119.23659 * 179.73274 * 16 15 14 18 18 O 1.35673 * 119.64882 * 180.27631 * 17 16 15 19 19 C 1.42904 * 116.99662 * 180.27522 * 18 17 16 20 20 N 1.32324 * 120.69789 * 0.55048 * 17 16 15 21 21 C 1.32336 * 121.57834 * 359.72115 * 20 17 16 22 22 O 1.35668 * 119.64838 * 180.02562 * 21 20 17 23 23 C 1.42901 * 117.00358 * 359.97438 * 22 21 20 24 24 C 1.38551 * 120.72532 * 96.25192 * 15 14 4 25 25 H 1.09001 * 109.46911 * 299.99777 * 1 2 3 26 26 H 1.08996 * 109.46880 * 60.00186 * 1 2 3 27 27 H 1.09004 * 109.46615 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47546 * 239.99829 * 2 1 3 29 29 H 1.08999 * 109.47368 * 119.99931 * 2 1 3 30 30 H 1.09004 * 109.47542 * 65.15905 * 3 2 1 31 31 H 1.09006 * 109.47114 * 305.15982 * 3 2 1 32 32 H 1.09004 * 109.46982 * 53.95486 * 5 4 3 33 33 H 1.09000 * 109.47188 * 173.95370 * 5 4 3 34 34 H 0.96994 * 120.00472 * 179.97438 * 9 8 6 35 35 H 1.08996 * 109.47023 * 283.82181 * 14 4 3 36 36 H 1.09000 * 109.47105 * 43.82486 * 14 4 3 37 37 H 1.08008 * 120.38401 * 0.02562 * 16 15 14 38 38 H 1.09005 * 109.46692 * 179.97438 * 19 18 17 39 39 H 1.08996 * 109.47044 * 299.99513 * 19 18 17 40 40 H 1.09001 * 109.46973 * 60.00049 * 19 18 17 41 41 H 1.08996 * 109.47233 * 300.00199 * 23 22 21 42 42 H 1.09003 * 109.46840 * 60.00177 * 23 22 21 43 43 H 1.09004 * 109.46981 * 179.97438 * 23 22 21 44 44 H 1.08004 * 120.38380 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5037 1.4444 -0.1246 5 6 3.9962 2.7690 -0.5256 6 6 3.5173 3.0822 -1.9197 7 1 2.9077 2.3687 -2.4542 8 6 3.8565 4.2799 -2.5125 9 7 3.4391 4.5530 -3.7293 10 14 4.9104 5.5142 -1.5876 11 1 6.3442 5.2523 -1.8720 12 1 4.5620 6.8895 -2.0263 13 1 4.6629 5.3821 -0.1294 14 6 4.1389 1.0024 1.1241 15 6 5.5757 0.6361 0.8545 16 6 5.9083 -0.6224 0.3799 17 6 7.2408 -0.9248 0.1369 18 8 7.5754 -2.1527 -0.3333 19 6 8.9639 -2.4052 -0.5577 20 7 8.1889 -0.0301 0.3641 21 6 7.9056 1.1786 0.8223 22 8 8.9087 2.0656 1.0409 23 6 10.2378 1.6253 0.7553 24 6 6.5934 1.5485 1.0812 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.7541 1.9290 0.9326 31 1 1.6031 1.9823 -0.8402 32 1 3.6182 3.5219 0.1661 33 1 5.0860 2.7726 -0.5064 34 1 3.6774 5.3958 -4.1461 35 1 4.1008 1.8088 1.8564 36 1 3.6091 0.1328 1.5132 37 1 5.1390 -1.3580 0.1965 38 1 9.0926 -3.4209 -0.9318 39 1 9.3483 -1.6962 -1.2909 40 1 9.5099 -2.2914 0.3789 41 1 10.4739 0.7584 1.3724 42 1 10.3120 1.3529 -0.2975 43 1 10.9414 2.4289 0.9728 44 1 6.3681 2.5362 1.4556 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237565845.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:46 Heat of formation + Delta-G solvation = -35.867947 kcal Electronic energy + Delta-G solvation = -24278.217500 eV Core-core repulsion = 20810.768799 eV Total energy + Delta-G solvation = -3467.448701 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.75791 -38.76061 -37.90686 -36.52541 -33.36001 -32.79737 -31.57318 -30.32860 -28.39623 -27.68018 -26.52393 -26.20868 -24.01294 -23.11614 -21.59406 -21.06810 -19.86080 -18.13530 -17.76347 -16.83888 -16.24491 -15.97674 -15.67173 -15.45499 -15.06346 -14.81879 -14.67764 -14.43927 -13.77497 -13.67197 -13.19487 -13.02960 -12.66643 -12.40464 -12.22578 -12.15889 -11.91666 -11.73352 -11.54685 -11.47179 -11.39612 -11.10156 -10.79141 -10.59083 -10.49045 -10.29097 -9.99295 -9.88826 -9.74209 -9.31171 -9.23590 -8.54771 -7.95883 -7.44216 -6.03562 -4.00385 1.44689 1.46771 3.06857 3.22570 3.30986 3.37722 3.39959 3.91391 4.36434 4.43994 4.79290 5.10267 5.19730 5.22278 5.24193 5.26415 5.28453 5.28957 5.35830 5.43647 5.49544 5.53577 5.54953 5.58371 5.74975 5.88012 5.90501 6.02558 6.07360 6.20204 6.25069 6.43808 6.51491 6.62681 6.66803 6.74635 6.92826 6.95045 6.99990 7.51535 7.60571 7.87324 7.90287 8.01273 8.65692 9.05067 9.58438 11.09437 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010581 B = 0.005952 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.628748 B = 4703.050257 C = 6404.590459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C 0.061 3.939 4 N -0.520 5.520 5 C 0.157 3.843 6 C -0.507 4.507 7 H 0.082 0.918 8 C 0.070 3.930 9 N -0.900 5.900 10 Si 0.870 3.130 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.086 3.914 15 C 0.048 3.952 16 C -0.200 4.200 17 C 0.352 3.648 18 O -0.306 6.306 19 C 0.042 3.958 20 N -0.599 5.599 21 C 0.354 3.646 22 O -0.306 6.306 23 C 0.042 3.958 24 C -0.215 4.215 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.020 0.980 31 H 0.094 0.906 32 H -0.011 1.011 33 H 0.029 0.971 34 H 0.263 0.737 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.143 0.857 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.093 0.907 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.626 -10.969 11.368 17.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.067 4.067 4 N -0.244 5.244 5 C 0.031 3.969 6 C -0.545 4.545 7 H 0.100 0.900 8 C -0.132 4.132 9 N -0.539 5.539 10 Si 0.697 3.303 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.192 1.192 14 C -0.042 4.042 15 C 0.040 3.960 16 C -0.221 4.221 17 C 0.175 3.825 18 O -0.213 6.213 19 C -0.053 4.053 20 N -0.338 5.338 21 C 0.177 3.823 22 O -0.213 6.213 23 C -0.053 4.053 24 C -0.236 4.236 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.039 0.961 31 H 0.112 0.888 32 H 0.007 0.993 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.102 0.898 37 H 0.161 0.839 38 H 0.112 0.888 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.112 0.888 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.460 -11.323 10.721 17.741 hybrid contribution 0.220 1.509 0.929 1.786 sum 8.680 -9.814 11.650 17.532 Atomic orbital electron populations 1.21723 0.96337 1.00898 1.01727 1.21551 0.94762 0.97596 1.01847 1.22104 0.87763 0.95899 1.00914 1.61952 1.05061 1.30553 1.26835 1.20281 0.95888 0.83913 0.96778 1.21005 1.32793 1.02931 0.97791 0.90041 1.24866 0.95748 0.97830 0.94717 1.69885 1.46125 1.24299 1.13597 0.86942 0.81476 0.81076 0.80829 1.20088 1.21211 1.19152 1.21098 0.89703 1.00345 0.93073 1.19778 0.95448 0.90906 0.89856 1.20679 0.93709 0.98918 1.08809 1.19270 0.89212 0.83838 0.90229 1.86258 1.28038 1.27775 1.79205 1.22791 0.79642 1.01484 1.01405 1.66664 1.38238 1.04095 1.24838 1.19207 0.87438 0.85191 0.90487 1.86268 1.15679 1.37846 1.81522 1.22797 0.80266 1.00741 1.01506 1.20817 0.89385 1.02366 1.11076 0.93316 0.92450 0.93251 0.91135 0.93088 0.96135 0.88755 0.99347 0.95268 0.92710 0.93970 0.89767 0.83902 0.88848 0.92453 0.92707 0.92642 0.92425 0.88849 0.84304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.55 16 2 C -0.12 -1.78 5.92 -26.73 -0.16 -1.94 16 3 C 0.06 1.11 4.81 -3.82 -0.02 1.09 16 4 N -0.52 -10.48 4.39 -237.50 -1.04 -11.52 16 5 C 0.16 3.78 3.63 -4.97 -0.02 3.76 16 6 C -0.51 -14.34 8.83 -34.44 -0.30 -14.64 16 7 H 0.08 2.50 7.51 -52.49 -0.39 2.11 16 8 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 9 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 10 Si 0.87 21.83 27.47 -169.99 -4.67 17.16 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 14 C 0.09 1.41 4.99 -4.97 -0.02 1.39 16 15 C 0.05 0.81 4.93 -104.39 -0.51 0.30 16 16 C -0.20 -3.26 9.76 -39.26 -0.38 -3.64 16 17 C 0.35 5.74 7.48 -17.14 -0.13 5.61 16 18 O -0.31 -4.46 10.47 -18.72 -0.20 -4.65 16 19 C 0.04 0.46 10.38 101.05 1.05 1.51 16 20 N -0.60 -9.84 8.06 -13.40 -0.11 -9.95 16 21 C 0.35 6.06 7.48 -17.14 -0.13 5.93 16 22 O -0.31 -4.85 10.47 -18.70 -0.20 -5.04 16 23 C 0.04 0.49 10.38 101.05 1.05 1.54 16 24 C -0.21 -3.75 8.39 -39.27 -0.33 -4.08 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.05 0.68 6.76 -51.93 -0.35 0.33 16 30 H 0.02 0.35 8.04 -51.93 -0.42 -0.07 16 31 H 0.09 1.99 6.58 -51.93 -0.34 1.65 16 32 H -0.01 -0.27 7.18 -51.93 -0.37 -0.64 16 33 H 0.03 0.72 5.66 -51.93 -0.29 0.43 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.04 0.67 7.97 -51.93 -0.41 0.26 16 36 H 0.08 1.18 6.42 -51.93 -0.33 0.85 16 37 H 0.14 2.12 8.06 -52.48 -0.42 1.70 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 40 H 0.05 0.56 8.10 -51.93 -0.42 0.14 16 41 H 0.05 0.59 8.10 -51.93 -0.42 0.17 16 42 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.14 2.36 8.06 -52.48 -0.42 1.93 16 LS Contribution 359.77 15.07 5.42 5.42 Total: -1.00 -32.04 359.77 -6.81 -38.85 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.15 Total: -0.57 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 0.36 Total: -2.78 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -0.38 Total: -48.38 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -0.39 Total: -9.70 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.04 -6.81 -38.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237565845.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.978 kcal (2) G-P(sol) polarization free energy of solvation -32.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds