Wall clock time and date at job start Tue Mar 31 2020 06:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47103 * 2 1 4 4 N 1.46902 * 109.47254 * 185.16012 * 3 2 1 5 5 C 1.46906 * 111.00080 * 163.15993 * 4 3 2 6 6 C 1.50703 * 109.47028 * 293.95610 * 5 4 3 7 7 H 1.08001 * 119.99858 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00056 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00462 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99570 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47397 * 90.00104 * 10 8 6 12 12 H 1.48506 * 109.47150 * 209.99704 * 10 8 6 13 13 H 1.48493 * 109.47452 * 329.99972 * 10 8 6 14 14 C 1.46900 * 111.00030 * 287.11501 * 4 3 2 15 15 C 1.50707 * 109.47006 * 163.82357 * 14 4 3 16 16 C 1.38549 * 120.72471 * 275.97419 * 15 14 4 17 17 C 1.38783 * 119.23659 * 179.73274 * 16 15 14 18 18 O 1.35673 * 119.64882 * 180.27631 * 17 16 15 19 19 C 1.42904 * 116.99662 * 180.27522 * 18 17 16 20 20 N 1.32324 * 120.69789 * 0.55048 * 17 16 15 21 21 C 1.32336 * 121.57834 * 359.72115 * 20 17 16 22 22 O 1.35668 * 119.64838 * 180.02562 * 21 20 17 23 23 C 1.42901 * 117.00358 * 359.97438 * 22 21 20 24 24 C 1.38551 * 120.72532 * 96.25192 * 15 14 4 25 25 H 1.09001 * 109.46911 * 299.99777 * 1 2 3 26 26 H 1.08996 * 109.46880 * 60.00186 * 1 2 3 27 27 H 1.09004 * 109.46615 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47546 * 239.99829 * 2 1 3 29 29 H 1.08999 * 109.47368 * 119.99931 * 2 1 3 30 30 H 1.09004 * 109.47542 * 65.15905 * 3 2 1 31 31 H 1.09006 * 109.47114 * 305.15982 * 3 2 1 32 32 H 1.09004 * 109.46982 * 53.95486 * 5 4 3 33 33 H 1.09000 * 109.47188 * 173.95370 * 5 4 3 34 34 H 0.96994 * 120.00472 * 179.97438 * 9 8 6 35 35 H 1.08996 * 109.47023 * 283.82181 * 14 4 3 36 36 H 1.09000 * 109.47105 * 43.82486 * 14 4 3 37 37 H 1.08008 * 120.38401 * 0.02562 * 16 15 14 38 38 H 1.09005 * 109.46692 * 179.97438 * 19 18 17 39 39 H 1.08996 * 109.47044 * 299.99513 * 19 18 17 40 40 H 1.09001 * 109.46973 * 60.00049 * 19 18 17 41 41 H 1.08996 * 109.47233 * 300.00199 * 23 22 21 42 42 H 1.09003 * 109.46840 * 60.00177 * 23 22 21 43 43 H 1.09004 * 109.46981 * 179.97438 * 23 22 21 44 44 H 1.08004 * 120.38380 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5037 1.4444 -0.1246 5 6 3.9962 2.7690 -0.5256 6 6 3.5173 3.0822 -1.9197 7 1 2.9077 2.3687 -2.4542 8 6 3.8565 4.2799 -2.5125 9 7 3.4391 4.5530 -3.7293 10 14 4.9104 5.5142 -1.5876 11 1 6.3442 5.2523 -1.8720 12 1 4.5620 6.8895 -2.0263 13 1 4.6629 5.3821 -0.1294 14 6 4.1389 1.0024 1.1241 15 6 5.5757 0.6361 0.8545 16 6 5.9083 -0.6224 0.3799 17 6 7.2408 -0.9248 0.1369 18 8 7.5754 -2.1527 -0.3333 19 6 8.9639 -2.4052 -0.5577 20 7 8.1889 -0.0301 0.3641 21 6 7.9056 1.1786 0.8223 22 8 8.9087 2.0656 1.0409 23 6 10.2378 1.6253 0.7553 24 6 6.5934 1.5485 1.0812 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.7541 1.9290 0.9326 31 1 1.6031 1.9823 -0.8402 32 1 3.6182 3.5219 0.1661 33 1 5.0860 2.7726 -0.5064 34 1 3.6774 5.3958 -4.1461 35 1 4.1008 1.8088 1.8564 36 1 3.6091 0.1328 1.5132 37 1 5.1390 -1.3580 0.1965 38 1 9.0926 -3.4209 -0.9318 39 1 9.3483 -1.6962 -1.2909 40 1 9.5099 -2.2914 0.3789 41 1 10.4739 0.7584 1.3724 42 1 10.3120 1.3529 -0.2975 43 1 10.9414 2.4289 0.9728 44 1 6.3681 2.5362 1.4556 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237565845.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:45 Heat of formation + Delta-G solvation = -59.974734 kcal Electronic energy + Delta-G solvation = -24279.262848 eV Core-core repulsion = 20810.768799 eV Total energy + Delta-G solvation = -3468.494050 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.96835 -39.88353 -39.30019 -37.81096 -34.89466 -34.53689 -33.09960 -31.49891 -30.07684 -28.89599 -27.52415 -27.43853 -25.65000 -24.34707 -23.08202 -22.44610 -21.32761 -19.41411 -18.96835 -18.85162 -17.38869 -17.21951 -16.93245 -16.58452 -16.50545 -16.26302 -16.12754 -15.79338 -15.36136 -14.91815 -14.59646 -14.42375 -14.14033 -13.81696 -13.72672 -13.38051 -13.09763 -12.95123 -12.74550 -12.69110 -12.54902 -12.51412 -12.45520 -12.23187 -11.88929 -11.69017 -11.57479 -11.46841 -11.25964 -10.97626 -10.77494 -10.60729 -9.19234 -9.02203 -8.28207 -6.29600 0.17143 0.20740 1.31940 1.33331 1.42650 1.93764 2.15604 2.32696 2.63601 3.05773 3.18620 3.35254 3.87164 3.99170 4.10384 4.19243 4.24197 4.34701 4.37708 4.39755 4.42081 4.43799 4.51160 4.61129 4.65615 4.68423 4.74444 4.77002 4.81791 4.85363 4.98452 5.08122 5.11686 5.28186 5.30535 5.37163 5.47594 5.54190 5.56614 5.82362 6.00473 6.34980 6.38817 6.63902 6.66467 6.76759 7.33196 8.88337 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010581 B = 0.005952 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.628748 B = 4703.050257 C = 6404.590459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C 0.062 3.938 4 N -0.535 5.535 5 C 0.170 3.830 6 C -0.509 4.509 7 H 0.040 0.960 8 C 0.011 3.989 9 N -0.947 5.947 10 Si 0.935 3.065 11 H -0.273 1.273 12 H -0.280 1.280 13 H -0.247 1.247 14 C 0.089 3.911 15 C 0.039 3.961 16 C -0.207 4.207 17 C 0.345 3.655 18 O -0.313 6.313 19 C 0.037 3.963 20 N -0.598 5.598 21 C 0.344 3.656 22 O -0.319 6.319 23 C 0.037 3.963 24 C -0.232 4.232 25 H 0.060 0.940 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.035 0.965 31 H 0.054 0.946 32 H -0.011 1.011 33 H 0.026 0.974 34 H 0.265 0.735 35 H 0.052 0.948 36 H 0.114 0.886 37 H 0.156 0.844 38 H 0.126 0.874 39 H 0.050 0.950 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.051 0.949 43 H 0.123 0.877 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.617 -11.843 13.516 19.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.149 4.149 3 C -0.065 4.065 4 N -0.259 5.259 5 C 0.043 3.957 6 C -0.547 4.547 7 H 0.059 0.941 8 C -0.186 4.186 9 N -0.588 5.588 10 Si 0.759 3.241 11 H -0.199 1.199 12 H -0.205 1.205 13 H -0.170 1.170 14 C -0.038 4.038 15 C 0.031 3.969 16 C -0.228 4.228 17 C 0.167 3.833 18 O -0.220 6.220 19 C -0.058 4.058 20 N -0.338 5.338 21 C 0.167 3.833 22 O -0.227 6.227 23 C -0.058 4.058 24 C -0.254 4.254 25 H 0.080 0.920 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.007 0.993 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.132 0.868 37 H 0.173 0.827 38 H 0.144 0.856 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.141 0.859 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.454 -12.222 12.888 20.121 hybrid contribution -0.048 1.656 0.210 1.670 sum 9.406 -10.567 13.097 19.278 Atomic orbital electron populations 1.21698 0.94736 1.02283 1.01600 1.21479 0.96089 0.95045 1.02238 1.22088 0.86603 0.97999 0.99818 1.61825 1.06266 1.28146 1.29636 1.19973 0.95423 0.86144 0.94127 1.21252 1.31708 1.02066 0.99678 0.94127 1.25739 0.97252 1.00070 0.95561 1.70034 1.48044 1.25193 1.15533 0.85895 0.79322 0.78431 0.80488 1.19850 1.20542 1.17049 1.21179 0.89515 1.01700 0.91399 1.19878 0.95582 0.91191 0.90200 1.20872 0.94240 0.99053 1.08618 1.19494 0.89394 0.84410 0.89977 1.86258 1.30174 1.26762 1.78783 1.23072 0.77859 1.03142 1.01719 1.66706 1.38293 1.03965 1.24838 1.19376 0.87874 0.85561 0.90479 1.86253 1.16927 1.38023 1.81450 1.23076 0.78896 1.02423 1.01368 1.20957 0.89945 1.02609 1.11888 0.92050 0.94028 0.91088 0.92791 0.90512 0.94638 0.92783 0.99333 0.95592 0.92564 0.92983 0.86789 0.82668 0.85626 0.93124 0.92063 0.91748 0.93003 0.85880 0.84310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.91 71.98 0.71 -2.78 16 2 C -0.11 -3.12 5.92 30.59 0.18 -2.94 16 3 C 0.06 2.25 4.81 86.30 0.41 2.66 16 4 N -0.53 -21.24 4.39 -905.32 -3.97 -25.22 16 5 C 0.17 8.17 3.63 85.56 0.31 8.48 16 6 C -0.51 -29.65 8.83 25.60 0.23 -29.42 16 7 H 0.04 2.63 7.51 -2.91 -0.02 2.61 16 8 C 0.01 0.65 5.47 84.66 0.46 1.12 16 9 N -0.95 -60.05 13.96 21.45 0.30 -59.75 16 10 Si 0.93 45.21 27.47 68.60 1.88 47.09 16 11 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 14 C 0.09 2.76 4.99 85.56 0.43 3.19 16 15 C 0.04 1.28 4.93 -19.71 -0.10 1.18 16 16 C -0.21 -6.46 9.76 22.47 0.22 -6.24 16 17 C 0.34 10.85 7.48 84.75 0.63 11.48 16 18 O -0.31 -8.63 10.47 -89.90 -0.94 -9.57 16 19 C 0.04 0.72 10.38 113.37 1.18 1.90 16 20 N -0.60 -19.00 8.06 -421.98 -3.40 -22.40 16 21 C 0.34 11.47 7.48 84.75 0.63 12.11 16 22 O -0.32 -9.71 10.47 -89.84 -0.94 -10.66 16 23 C 0.04 0.79 10.38 113.37 1.18 1.97 16 24 C -0.23 -7.89 8.39 22.47 0.19 -7.70 16 25 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.08 1.78 6.76 -2.39 -0.02 1.76 16 30 H 0.04 1.16 8.04 -2.38 -0.02 1.14 16 31 H 0.05 2.37 6.58 -2.38 -0.02 2.35 16 32 H -0.01 -0.52 7.18 -2.38 -0.02 -0.54 16 33 H 0.03 1.27 5.66 -2.39 -0.01 1.26 16 34 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 35 H 0.05 1.53 7.97 -2.39 -0.02 1.51 16 36 H 0.11 2.82 6.42 -2.39 -0.02 2.81 16 37 H 0.16 4.34 8.06 -2.91 -0.02 4.31 16 38 H 0.13 1.63 8.14 -2.38 -0.02 1.62 16 39 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 40 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 41 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 42 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 43 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.14 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -70.99 359.77 0.51 -70.48 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.92 Total: 15.02 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 6.67 Total: -5.00 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -7.08 Total: -107.37 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -1.88 Total: -20.23 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.88 Total: 47.09 kcal Total: -70.99 0.51 -70.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237565845.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.508 kcal (2) G-P(sol) polarization free energy of solvation -70.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds