Wall clock time and date at job start Tue Mar 31 2020 06:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42902 * 109.46640 * 2 1 4 4 C 1.35678 * 116.99582 * 180.02562 * 3 2 1 5 5 C 1.38925 * 119.68147 * 179.97438 * 4 3 2 6 6 C 1.38382 * 119.11158 * 180.02562 * 5 4 3 7 7 C 1.38834 * 118.48371 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.35594 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.46277 * 340.00035 * 8 7 6 10 10 C 1.52995 * 109.47112 * 99.99857 * 8 7 6 11 11 O 1.42902 * 109.47015 * 55.00419 * 10 8 7 12 12 N 1.46900 * 109.47051 * 220.00207 * 8 7 6 13 13 C 1.46900 * 110.99493 * 156.31888 * 12 8 7 14 14 H 1.08997 * 109.47269 * 33.94956 * 13 12 8 15 15 C 1.50700 * 109.46592 * 153.95079 * 13 12 8 16 16 H 1.08000 * 120.00234 * 4.13353 * 15 13 12 17 17 C 1.37883 * 119.99737 * 184.13661 * 15 13 12 18 18 N 1.31507 * 120.00125 * 9.75958 * 17 15 13 19 19 Si 1.86807 * 119.99740 * 190.03931 * 17 15 13 20 20 H 1.48498 * 109.46927 * 269.72175 * 19 17 15 21 21 H 1.48497 * 109.47069 * 29.72332 * 19 17 15 22 22 H 1.48500 * 109.47004 * 149.72172 * 19 17 15 23 23 C 1.53005 * 109.46974 * 273.94367 * 13 12 8 24 24 C 1.52998 * 109.47523 * 297.26457 * 23 13 12 25 25 C 1.38047 * 119.28897 * 0.25646 * 7 6 5 26 26 N 1.31967 * 120.83405 * 359.49878 * 25 7 6 27 27 H 1.08995 * 109.46524 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46975 * 299.99650 * 1 2 3 29 29 H 1.09000 * 109.47132 * 60.00260 * 1 2 3 30 30 H 1.08994 * 109.47183 * 240.00035 * 2 1 3 31 31 H 1.09000 * 109.47603 * 119.99494 * 2 1 3 32 32 H 1.07993 * 120.44737 * 359.97151 * 5 4 3 33 33 H 1.07992 * 120.75658 * 180.02562 * 6 5 4 34 34 H 1.08996 * 109.47072 * 175.00001 * 10 8 7 35 35 H 1.09000 * 109.47386 * 295.00390 * 10 8 7 36 36 H 0.96705 * 114.00111 * 179.97438 * 11 10 8 37 37 H 1.00901 * 110.99956 * 32.36851 * 12 8 7 38 38 H 0.96997 * 120.00306 * 357.67089 * 18 17 15 39 39 H 1.09001 * 109.46681 * 57.26651 * 23 13 12 40 40 H 1.09003 * 109.46847 * 177.26238 * 23 13 12 41 41 H 1.08994 * 109.46873 * 184.56353 * 24 23 13 42 42 H 1.09008 * 109.47185 * 304.56573 * 24 23 13 43 43 H 1.09001 * 109.46898 * 64.55799 * 24 23 13 44 44 H 1.08003 * 119.58100 * 179.72309 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5251 -0.0005 5 6 3.8752 2.8118 -0.0011 6 6 5.2488 2.9795 -0.0022 7 6 6.0539 1.8484 -0.0021 8 6 7.5550 1.9821 -0.0039 9 1 7.8307 2.9759 -0.3565 10 6 8.0867 1.7790 1.4163 11 8 7.6270 0.5240 1.9221 12 7 8.1358 0.9680 -0.8940 13 6 9.4634 1.3817 -1.3676 14 1 9.9681 1.9482 -0.5850 15 6 10.2780 0.1605 -1.7087 16 1 9.8307 -0.8207 -1.6498 17 6 11.5944 0.2960 -2.0959 18 7 12.1959 1.4601 -1.9849 19 14 12.5209 -1.1723 -2.7854 20 1 13.1874 -1.9020 -1.6770 21 1 11.5682 -2.0801 -3.4735 22 1 13.5436 -0.7018 -3.7539 23 6 9.3106 2.2570 -2.6132 24 6 8.6639 1.4407 -3.7340 25 6 5.4647 0.6001 -0.0064 26 7 4.1513 0.4720 -0.0006 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8935 -0.5137 0.8900 32 1 3.2193 3.6697 -0.0016 33 1 5.6846 3.9676 -0.0022 34 1 9.1765 1.7872 1.4008 35 1 7.7263 2.5833 2.0577 36 1 7.9270 0.3283 2.8204 37 1 7.5203 0.7720 -1.6691 38 1 11.7041 2.2314 -1.6624 39 1 8.6809 3.1153 -2.3790 40 1 10.2922 2.6038 -2.9362 41 1 8.6290 2.0382 -4.6449 42 1 9.2510 0.5398 -3.9127 43 1 7.6510 1.1624 -3.4428 44 1 6.0865 -0.2830 -0.0109 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255151398.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:59 Heat of formation + Delta-G solvation = -57.915565 kcal Electronic energy + Delta-G solvation = -24227.868834 eV Core-core repulsion = 20759.464077 eV Total energy + Delta-G solvation = -3468.404757 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.57945 -38.52920 -37.11727 -35.82092 -33.48429 -32.32270 -31.88941 -31.03137 -29.31186 -27.36666 -25.51684 -24.27299 -23.64772 -23.35357 -22.18636 -20.65243 -19.27746 -18.44578 -17.39959 -16.72045 -16.43779 -16.28777 -15.87587 -14.59858 -14.34727 -14.08441 -13.95397 -13.77330 -13.60024 -13.57554 -13.50312 -12.95687 -12.82895 -12.67835 -12.47466 -12.28424 -12.10757 -11.67508 -11.36084 -11.14183 -10.92101 -10.75500 -10.69516 -10.24358 -10.13266 -10.07906 -9.89379 -9.74361 -9.55931 -9.37362 -8.70931 -8.24166 -8.15602 -7.34611 -6.30541 -3.97457 1.34157 1.38993 3.03500 3.46314 3.49618 3.65301 3.92830 4.49202 4.52227 4.62966 4.86580 4.88714 4.91620 4.97317 5.13206 5.21451 5.26786 5.35009 5.39792 5.57756 5.61634 5.66871 5.77217 5.83947 5.93044 5.95060 6.07036 6.08544 6.12090 6.19648 6.29243 6.48135 6.62566 6.66012 6.95432 6.99775 7.22183 7.27592 7.33200 7.87957 8.04220 8.07562 8.26915 8.40700 8.68509 8.93920 9.69741 11.06149 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022072 B = 0.003623 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.264985 B = 7726.300129 C = 7898.893744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.067 3.933 3 O -0.313 6.313 4 C 0.310 3.690 5 C -0.198 4.198 6 C -0.043 4.043 7 C -0.162 4.162 8 C 0.134 3.866 9 H 0.054 0.946 10 C 0.096 3.904 11 O -0.553 6.553 12 N -0.660 5.660 13 C 0.204 3.796 14 H 0.024 0.976 15 C -0.568 4.568 16 H 0.057 0.943 17 C 0.018 3.982 18 N -0.917 5.917 19 Si 1.067 2.933 20 H -0.290 1.290 21 H -0.288 1.288 22 H -0.287 1.287 23 C -0.152 4.152 24 C -0.132 4.132 25 C 0.182 3.818 26 N -0.543 5.543 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.053 0.947 35 H 0.032 0.968 36 H 0.367 0.633 37 H 0.331 0.669 38 H 0.267 0.733 39 H 0.019 0.981 40 H 0.068 0.932 41 H 0.028 0.972 42 H 0.072 0.928 43 H 0.032 0.968 44 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.996 2.023 5.266 17.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.221 6.221 4 C 0.132 3.868 5 C -0.219 4.219 6 C -0.069 4.069 7 C -0.165 4.165 8 C 0.022 3.978 9 H 0.072 0.928 10 C 0.018 3.982 11 O -0.356 6.356 12 N -0.291 5.291 13 C 0.096 3.904 14 H 0.042 0.958 15 C -0.606 4.606 16 H 0.075 0.925 17 C -0.185 4.185 18 N -0.554 5.554 19 Si 0.896 3.104 20 H -0.217 1.217 21 H -0.214 1.214 22 H -0.213 1.213 23 C -0.192 4.192 24 C -0.189 4.189 25 C 0.026 3.974 26 N -0.267 5.267 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.212 0.788 37 H 0.150 0.850 38 H 0.079 0.921 39 H 0.038 0.962 40 H 0.086 0.914 41 H 0.047 0.953 42 H 0.091 0.909 43 H 0.051 0.949 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -16.162 0.466 4.607 16.812 hybrid contribution -0.984 2.041 0.499 2.320 sum -17.146 2.507 5.105 18.064 Atomic orbital electron populations 1.21815 0.93325 1.02733 1.03072 1.22549 0.94371 0.81374 1.02594 1.86186 1.17314 1.30420 1.88173 1.19816 0.83849 0.90214 0.92958 1.20901 0.95493 0.95559 1.09941 1.21308 0.92204 0.99021 0.94394 1.20794 0.96825 0.94036 1.04849 1.20356 0.87911 0.95427 0.94059 0.92811 1.22125 0.98005 0.84918 0.93190 1.86554 1.76559 1.38270 1.34259 1.60860 1.05063 1.41110 1.22090 1.19382 0.85528 0.94980 0.90493 0.95779 1.21814 0.97731 0.93089 1.47998 0.92484 1.25689 0.95192 1.02255 0.95412 1.70794 1.38825 1.01226 1.44583 0.83569 0.75535 0.74606 0.76682 1.21663 1.21433 1.21275 1.22236 1.00112 0.97318 0.99512 1.21587 0.99253 1.01215 0.96850 1.22475 0.87852 0.97935 0.89144 1.67456 1.06835 1.32809 1.19561 0.90426 0.91832 0.91791 0.91666 0.91708 0.84679 0.84651 0.92857 0.94997 0.78802 0.84978 0.92129 0.96250 0.91373 0.95289 0.90863 0.94875 0.81014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.16 0.38 -0.84 16 2 C 0.07 0.75 6.03 37.16 0.22 0.97 16 3 O -0.31 -4.29 10.12 -18.74 -0.19 -4.48 16 4 C 0.31 4.66 7.49 -17.12 -0.13 4.53 16 5 C -0.20 -2.66 10.04 -39.27 -0.39 -3.05 16 6 C -0.04 -0.59 9.81 -39.31 -0.39 -0.97 16 7 C -0.16 -2.54 4.60 -104.47 -0.48 -3.02 16 8 C 0.13 2.28 2.48 -68.87 -0.17 2.11 16 9 H 0.05 0.91 7.07 -51.93 -0.37 0.55 16 10 C 0.10 1.55 6.76 37.16 0.25 1.80 16 11 O -0.55 -8.82 12.08 -35.23 -0.43 -9.25 16 12 N -0.66 -13.31 5.36 -102.17 -0.55 -13.86 16 13 C 0.20 4.77 1.74 -68.86 -0.12 4.65 16 14 H 0.02 0.62 6.39 -51.93 -0.33 0.29 16 15 C -0.57 -15.11 7.30 -34.44 -0.25 -15.36 16 16 H 0.06 1.58 7.83 -52.49 -0.41 1.17 16 17 C 0.02 0.49 5.21 -17.82 -0.09 0.40 16 18 N -0.92 -26.46 13.05 55.43 0.72 -25.73 16 19 Si 1.07 24.86 29.92 -169.99 -5.09 19.78 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 C -0.15 -3.34 5.45 -26.73 -0.15 -3.49 16 24 C -0.13 -2.69 9.39 37.16 0.35 -2.34 16 25 C 0.18 3.00 9.22 -17.56 -0.16 2.84 16 26 N -0.54 -8.78 9.22 -13.33 -0.12 -8.90 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 31 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 32 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.05 0.95 7.29 -51.93 -0.38 0.57 16 35 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.37 4.25 9.12 45.56 0.42 4.66 16 37 H 0.33 6.62 5.80 -39.29 -0.23 6.39 16 38 H 0.27 7.63 5.96 -40.82 -0.24 7.39 16 39 H 0.02 0.38 7.46 -51.93 -0.39 -0.01 16 40 H 0.07 1.66 6.34 -51.93 -0.33 1.34 16 41 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 1.65 6.97 -51.92 -0.36 1.28 16 43 H 0.03 0.62 6.53 -51.93 -0.34 0.28 16 44 H 0.17 3.04 7.48 -52.48 -0.39 2.65 16 LS Contribution 354.15 15.07 5.34 5.34 Total: -1.00 -30.37 354.15 -7.39 -37.76 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -5.95 Total: 11.13 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -1.13 Total: -11.78 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.05 Total: -48.49 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.62 Total: -13.72 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.09 Total: 19.78 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.37 -7.39 -37.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255151398.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.160 kcal (2) G-P(sol) polarization free energy of solvation -30.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds