Wall clock time and date at job start Tue Mar 31 2020 06:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46809 * 2 1 4 4 H 1.08999 * 109.47008 * 305.91343 * 3 2 1 5 5 C 1.50705 * 109.46979 * 185.91749 * 3 2 1 6 6 H 1.08001 * 119.99826 * 243.23097 * 5 3 2 7 7 C 1.37879 * 119.99858 * 63.22659 * 5 3 2 8 8 N 1.31511 * 119.99963 * 195.94774 * 7 5 3 9 9 Si 1.86799 * 120.00018 * 15.95131 * 7 5 3 10 10 H 1.48498 * 109.47227 * 93.48481 * 9 7 5 11 11 H 1.48505 * 109.46814 * 213.48381 * 9 7 5 12 12 H 1.48503 * 109.47212 * 333.48537 * 9 7 5 13 13 N 1.46901 * 109.47318 * 65.91775 * 3 2 1 14 14 C 1.46896 * 110.99762 * 258.81861 * 13 3 2 15 15 C 1.50699 * 109.46715 * 175.67108 * 14 13 3 16 16 C 1.38833 * 120.35946 * 90.00002 * 15 14 13 17 17 C 1.38378 * 118.48244 * 179.97438 * 16 15 14 18 18 C 1.38919 * 119.11744 * 0.02562 * 17 16 15 19 19 O 1.35671 * 119.68574 * 179.97438 * 18 17 16 20 20 C 1.42899 * 116.99869 * 179.97438 * 19 18 17 21 21 C 1.53001 * 109.46831 * 180.02562 * 20 19 18 22 22 O 1.42901 * 109.47492 * 65.00413 * 21 20 19 23 23 C 1.42893 * 114.00198 * 180.02562 * 22 21 20 24 24 N 1.32244 * 120.62518 * 0.25170 * 18 17 16 25 25 C 1.31968 * 121.65453 * 359.47990 * 24 18 17 26 26 H 1.09005 * 109.46764 * 175.90206 * 1 2 3 27 27 H 1.08998 * 109.46873 * 295.89882 * 1 2 3 28 28 H 1.08995 * 109.46773 * 55.89936 * 1 2 3 29 29 H 1.08993 * 109.47342 * 239.99872 * 2 1 3 30 30 H 1.09006 * 109.47113 * 119.99577 * 2 1 3 31 31 H 0.97004 * 120.00155 * 180.02562 * 8 7 5 32 32 H 1.00903 * 110.99872 * 22.77067 * 13 3 2 33 33 H 1.08998 * 109.47636 * 55.66648 * 14 13 3 34 34 H 1.09002 * 109.47221 * 295.66119 * 14 13 3 35 35 H 1.07999 * 120.75263 * 359.95158 * 16 15 14 36 36 H 1.08005 * 120.43836 * 180.02562 * 17 16 15 37 37 H 1.08996 * 109.47116 * 60.00412 * 20 19 18 38 38 H 1.09002 * 109.47079 * 299.99874 * 20 19 18 39 39 H 1.09003 * 109.46992 * 184.99885 * 21 20 19 40 40 H 1.08999 * 109.47461 * 304.99632 * 21 20 19 41 41 H 1.09006 * 109.47191 * 59.99455 * 23 22 21 42 42 H 1.09000 * 109.47159 * 179.97438 * 23 22 21 43 43 H 1.09003 * 109.47239 * 299.99784 * 23 22 21 44 44 H 1.07992 * 119.58820 * 180.27135 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5927 1.9860 -0.8323 5 6 3.5399 1.4451 -0.1465 6 1 4.1592 1.8384 0.6461 7 6 4.1215 0.9454 -1.2924 8 7 5.4039 0.6543 -1.3057 9 14 3.0879 0.6818 -2.8259 10 1 3.1736 1.8841 -3.6932 11 1 3.5950 -0.5007 -3.5674 12 1 1.6734 0.4525 -2.4361 13 7 1.6703 2.0926 1.2644 14 6 0.4975 2.9593 1.0876 15 6 0.0844 3.5239 2.4223 16 6 0.6133 4.7272 2.8692 17 6 0.2065 5.2101 4.1006 18 6 -0.7114 4.4787 4.8438 19 8 -1.1179 4.9411 6.0528 20 6 -2.0636 4.1434 6.7679 21 6 -2.4001 4.8212 8.0977 22 8 -3.0650 6.0608 7.8459 23 6 -3.4247 6.7781 9.0282 24 7 -1.1887 3.3333 4.3864 25 6 -0.8237 2.8498 3.2140 26 1 -0.3633 -1.0251 -0.0734 27 1 -0.3633 0.4489 0.9245 28 1 -0.3633 0.5761 -0.8509 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 5.8132 0.3030 -2.1120 32 1 1.5089 1.4090 1.9888 33 1 -0.3240 2.3780 0.6689 34 1 0.7477 3.7754 0.4097 35 1 1.3262 5.2737 2.2697 36 1 0.5974 6.1431 4.4788 37 1 -1.6374 3.1587 6.9592 38 1 -2.9718 4.0373 6.1745 39 1 -3.0520 4.1715 8.6819 40 1 -1.4811 5.0080 8.6532 41 1 -2.5266 7.0057 9.6025 42 1 -3.9239 7.7069 8.7519 43 1 -4.0975 6.1692 9.6321 44 1 -1.2378 1.9132 2.8712 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255156169.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:38 Heat of formation + Delta-G solvation = -69.434590 kcal Electronic energy + Delta-G solvation = -23055.692995 eV Core-core repulsion = 19586.788736 eV Total energy + Delta-G solvation = -3468.904260 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.62374 -39.58543 -38.61886 -38.03892 -34.79005 -33.78940 -33.07299 -31.84118 -30.73497 -29.02890 -27.25406 -25.99966 -25.08215 -24.13349 -23.20043 -22.56883 -21.68132 -19.55255 -18.82913 -18.06576 -17.84597 -16.89704 -16.69209 -16.58845 -16.41714 -16.02087 -15.81848 -15.57630 -15.38781 -14.81047 -14.57184 -14.41438 -14.15470 -13.97346 -13.56664 -13.34618 -13.27723 -13.11016 -12.95850 -12.60477 -12.53636 -12.34538 -12.32942 -12.14604 -11.85426 -11.64267 -11.31115 -11.22647 -10.80245 -10.72198 -10.56407 -10.49182 -9.41134 -8.86632 -8.23241 -6.19156 0.18199 0.32353 1.36826 1.41130 1.49594 2.02704 2.39944 2.75925 2.80023 3.10004 3.33913 3.69203 3.91468 3.95145 4.05465 4.08030 4.12717 4.23713 4.34189 4.42022 4.42711 4.50004 4.52734 4.54074 4.57261 4.60829 4.72916 4.78569 4.83048 4.86539 4.91898 5.00592 5.14810 5.21655 5.26709 5.45774 5.50502 5.56726 5.78512 6.09917 6.15910 6.28177 6.75062 6.81645 6.86038 6.87109 7.43663 8.94279 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.037888 B = 0.002572 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.837540 B =10882.102511 C =11176.817740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.149 4.149 3 C 0.199 3.801 4 H 0.027 0.973 5 C -0.504 4.504 6 H 0.029 0.971 7 C 0.010 3.990 8 N -0.948 5.948 9 Si 0.928 3.072 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.222 1.222 13 N -0.680 5.680 14 C 0.107 3.893 15 C -0.165 4.165 16 C -0.025 4.025 17 C -0.193 4.193 18 C 0.301 3.699 19 O -0.312 6.312 20 C 0.070 3.930 21 C 0.062 3.938 22 O -0.418 6.418 23 C 0.025 3.975 24 N -0.551 5.551 25 C 0.140 3.860 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.262 0.738 32 H 0.333 0.667 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.066 0.934 41 H 0.049 0.951 42 H 0.092 0.908 43 H 0.057 0.943 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.391 7.577 16.195 27.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.188 4.188 3 C 0.090 3.910 4 H 0.045 0.955 5 C -0.543 4.543 6 H 0.048 0.952 7 C -0.186 4.186 8 N -0.588 5.588 9 Si 0.752 3.248 10 H -0.207 1.207 11 H -0.217 1.217 12 H -0.145 1.145 13 N -0.311 5.311 14 C -0.022 4.022 15 C -0.168 4.168 16 C -0.051 4.051 17 C -0.214 4.214 18 C 0.122 3.878 19 O -0.220 6.220 20 C -0.005 4.005 21 C -0.014 4.014 22 O -0.338 6.338 23 C -0.070 4.070 24 N -0.275 5.275 25 C -0.016 4.016 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.151 0.849 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.169 0.831 36 H 0.171 0.829 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.117 0.883 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.111 0.889 43 H 0.076 0.924 44 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -20.386 7.883 16.521 27.399 hybrid contribution 0.365 -0.618 -1.124 1.334 sum -20.021 7.265 15.397 26.281 Atomic orbital electron populations 1.21888 0.94784 1.02030 1.01763 1.22470 0.96018 0.99388 1.00965 1.19359 0.93214 0.89993 0.88454 0.95524 1.21309 0.92000 1.38702 1.02288 0.95238 1.25794 0.95908 0.94771 1.02171 1.70140 1.13942 1.45564 1.29190 0.86176 0.81909 0.77373 0.79355 1.20704 1.21735 1.14452 1.60517 1.36135 1.25863 1.08550 1.20871 0.92006 0.96829 0.92510 1.20754 1.00046 0.97061 0.98959 1.21549 0.95285 0.94302 0.93921 1.21242 1.00991 1.03361 0.95771 1.20023 0.91684 0.89748 0.86296 1.86258 1.59414 1.48846 1.27501 1.22806 0.91560 0.94097 0.92057 1.22747 0.97572 0.86254 0.94803 1.87920 1.78253 1.34762 1.32845 1.22930 0.99994 0.96956 0.87166 1.67319 1.29460 1.13483 1.17218 1.22550 0.92895 0.98671 0.87489 0.91930 0.91648 0.93020 0.93771 0.92981 0.92878 0.84868 0.92818 0.91040 0.83125 0.82857 0.89347 0.91620 0.88341 0.91622 0.93230 0.88942 0.92445 0.80850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.23 8.74 71.98 0.63 -3.60 16 2 C -0.15 -5.77 4.49 30.60 0.14 -5.63 16 3 C 0.20 8.68 1.73 44.17 0.08 8.76 16 4 H 0.03 1.17 6.36 -2.39 -0.02 1.15 16 5 C -0.50 -28.48 9.29 25.60 0.24 -28.24 16 6 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 7 C 0.01 0.60 5.31 84.66 0.45 1.05 16 8 N -0.95 -59.43 13.96 21.45 0.30 -59.13 16 9 Si 0.93 42.79 25.75 68.60 1.77 44.55 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 12 H -0.22 -8.99 5.48 99.48 0.55 -8.44 16 13 N -0.68 -25.52 6.09 -499.46 -3.04 -28.57 16 14 C 0.11 3.16 5.21 85.56 0.45 3.61 16 15 C -0.17 -4.45 5.36 -19.77 -0.11 -4.56 16 16 C -0.02 -0.65 9.85 22.45 0.22 -0.43 16 17 C -0.19 -4.93 10.04 22.47 0.23 -4.70 16 18 C 0.30 8.24 7.49 84.79 0.63 8.88 16 19 O -0.31 -8.10 10.08 -85.25 -0.86 -8.96 16 20 C 0.07 1.39 5.69 71.98 0.41 1.80 16 21 C 0.06 0.95 6.32 71.98 0.45 1.40 16 22 O -0.42 -8.13 10.67 -144.35 -1.54 -9.67 16 23 C 0.03 0.29 11.01 113.37 1.25 1.54 16 24 N -0.55 -14.91 9.22 -308.96 -2.85 -17.76 16 25 C 0.14 3.53 10.85 84.63 0.92 4.45 16 26 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.06 1.61 6.50 -2.39 -0.02 1.60 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.04 1.84 4.86 -2.39 -0.01 1.83 16 30 H 0.05 2.05 8.01 -2.38 -0.02 2.03 16 31 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 32 H 0.33 11.82 7.96 -89.69 -0.71 11.10 16 33 H 0.05 1.41 5.93 -2.39 -0.01 1.39 16 34 H 0.07 2.19 8.09 -2.39 -0.02 2.17 16 35 H 0.15 3.65 8.06 -2.91 -0.02 3.62 16 36 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 37 H 0.09 1.60 8.10 -2.39 -0.02 1.58 16 38 H 0.07 1.40 8.11 -2.39 -0.02 1.38 16 39 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 42 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.17 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -70.61 358.31 -0.13 -70.74 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.11 Total: 24.47 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: 5.98 Total: -15.68 kcal Atomic # 7 Polarization: -99.86 SS G_CDS: -5.59 Total: -105.45 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -2.40 Total: -18.63 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.77 Total: 44.55 kcal Total: -70.61 -0.13 -70.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156169.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.301 kcal (2) G-P(sol) polarization free energy of solvation -70.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds