Wall clock time and date at job start Tue Mar 31 2020 06:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47345 * 2 1 4 4 H 1.08999 * 109.47043 * 54.72278 * 3 2 1 5 5 C 1.50691 * 109.47299 * 174.72699 * 3 2 1 6 6 H 1.08008 * 120.00532 * 120.15353 * 5 3 2 7 7 C 1.37884 * 120.00215 * 300.15540 * 5 3 2 8 8 N 1.31510 * 120.00283 * 166.68589 * 7 5 3 9 9 Si 1.86797 * 119.99479 * 346.69480 * 7 5 3 10 10 H 1.48508 * 109.47109 * 264.64913 * 9 7 5 11 11 H 1.48498 * 109.47553 * 24.65025 * 9 7 5 12 12 H 1.48499 * 109.47332 * 144.65206 * 9 7 5 13 13 N 1.46905 * 109.46982 * 294.72505 * 3 2 1 14 14 C 1.46906 * 110.99791 * 101.42146 * 13 3 2 15 15 C 1.53005 * 109.47002 * 183.10980 * 14 13 3 16 16 C 1.52993 * 109.46980 * 179.97438 * 15 14 13 17 17 C 1.53005 * 109.46980 * 179.97438 * 16 15 14 18 18 C 1.53002 * 109.47086 * 179.97438 * 17 16 15 19 19 N 1.46500 * 109.47158 * 180.02562 * 18 17 16 20 20 C 1.34520 * 125.20511 * 269.69943 * 19 18 17 21 21 O 1.21399 * 125.79559 * 359.97337 * 20 19 18 22 22 C 1.47969 * 108.40814 * 179.85277 * 20 19 18 23 23 C 1.34315 * 106.79507 * 0.40785 * 22 20 19 24 24 C 1.34513 * 125.20815 * 90.00089 * 19 18 17 25 25 O 1.21402 * 125.79153 * 359.97438 * 24 19 18 26 26 H 1.09006 * 109.46922 * 306.77771 * 1 2 3 27 27 H 1.09002 * 109.46949 * 66.77756 * 1 2 3 28 28 H 1.08997 * 109.47034 * 186.77785 * 1 2 3 29 29 H 1.09003 * 109.46656 * 240.00510 * 2 1 3 30 30 H 1.08992 * 109.47075 * 120.00313 * 2 1 3 31 31 H 0.97003 * 120.00130 * 179.97438 * 8 7 5 32 32 H 1.00892 * 111.00029 * 337.46799 * 13 3 2 33 33 H 1.09002 * 109.47038 * 303.11017 * 14 13 3 34 34 H 1.09000 * 109.47111 * 63.11142 * 14 13 3 35 35 H 1.08996 * 109.47473 * 300.00318 * 15 14 13 36 36 H 1.09001 * 109.46718 * 59.99703 * 15 14 13 37 37 H 1.09002 * 109.47260 * 300.00159 * 16 15 14 38 38 H 1.09001 * 109.47428 * 60.00395 * 16 15 14 39 39 H 1.08994 * 109.46966 * 300.00018 * 17 16 15 40 40 H 1.09000 * 109.47056 * 60.00386 * 17 16 15 41 41 H 1.09002 * 109.47253 * 300.00220 * 18 17 16 42 42 H 1.09000 * 109.46812 * 60.00293 * 18 17 16 43 43 H 1.07998 * 126.60020 * 180.13309 * 22 20 19 44 44 H 1.07999 * 126.60427 * 179.79994 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6017 1.9828 0.8389 5 6 3.5413 1.4444 0.1306 6 1 4.1501 1.8900 -0.6424 7 6 4.1379 0.8774 1.2368 8 7 5.4316 0.6411 1.2376 9 14 3.1084 0.4447 2.7342 10 1 3.1738 1.5555 3.7177 11 1 1.6981 0.2320 2.3207 12 1 3.6349 -0.7974 3.3548 13 7 1.6572 2.0972 -1.2581 14 6 0.4897 2.9677 -1.0644 15 6 0.0742 3.5701 -2.4081 16 6 -1.1420 4.4761 -2.2064 17 6 -1.5572 5.0790 -3.5500 18 6 -2.7738 5.9846 -3.3485 19 7 -3.1717 6.5613 -4.6351 20 6 -2.7203 7.7253 -5.1360 21 8 -1.9218 8.4666 -4.6006 22 6 -3.3599 7.9471 -6.4517 23 6 -4.1744 6.9014 -6.6686 24 6 -4.0488 6.0109 -5.4937 25 8 -4.6371 4.9613 -5.3321 26 1 -0.3633 0.6153 0.8232 27 1 -0.3633 0.4052 -0.9444 28 1 -0.3633 -1.0205 0.1213 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 5.8514 0.2426 2.0160 32 1 1.4842 1.4162 -1.9821 33 1 -0.3355 2.3835 -0.6573 34 1 0.7449 3.7687 -0.3705 35 1 0.8994 4.1542 -2.8152 36 1 -0.1809 2.7690 -3.1019 37 1 -1.9671 3.8916 -1.7995 38 1 -0.8873 5.2772 -1.5125 39 1 -0.7319 5.6636 -3.9564 40 1 -1.8118 4.2782 -4.2444 41 1 -3.5990 5.3996 -2.9422 42 1 -2.5196 6.7853 -2.6541 43 1 -3.2053 8.7901 -7.1089 44 1 -4.8000 6.7410 -7.5342 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255157039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:57 Heat of formation + Delta-G solvation = -33.118358 kcal Electronic energy + Delta-G solvation = -22852.257539 eV Core-core repulsion = 19384.928069 eV Total energy + Delta-G solvation = -3467.329470 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.62639 -39.03928 -37.33356 -36.62154 -35.93261 -33.85198 -32.22286 -31.34098 -29.27171 -27.25826 -25.78215 -24.98202 -22.65285 -22.06508 -21.75043 -21.07721 -20.27147 -19.76475 -17.86720 -16.93843 -16.66992 -16.62152 -15.85078 -15.60074 -15.07489 -14.70293 -14.62110 -14.40919 -14.40350 -14.04571 -13.72345 -13.33654 -13.21932 -12.74829 -12.23735 -12.13105 -11.96794 -11.64984 -11.52937 -11.25713 -11.13181 -10.96686 -10.84447 -10.76252 -10.69885 -10.65811 -10.42977 -10.34929 -10.06128 -9.83241 -9.25167 -9.18910 -8.36833 -7.27410 -6.01497 -3.93925 -0.43297 1.92494 2.07555 2.34487 3.29367 3.30310 3.38577 3.41417 3.66897 4.46363 4.49268 4.50351 4.71964 4.76546 4.82284 5.03128 5.06632 5.10554 5.14548 5.26422 5.30401 5.49831 5.57984 5.76928 5.79515 5.84255 5.88923 5.93955 6.01928 6.05497 6.14733 6.22167 6.45672 6.46932 6.56046 6.63286 6.70775 6.79300 6.90724 7.16061 7.22094 7.81144 8.00966 8.40646 8.77920 9.15459 9.64781 11.12180 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030475 B = 0.002364 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.576278 B =11841.652182 C =12287.325498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.155 4.155 3 C 0.193 3.807 4 H 0.022 0.978 5 C -0.498 4.498 6 H 0.080 0.920 7 C 0.068 3.932 8 N -0.898 5.898 9 Si 0.856 3.144 10 H -0.284 1.284 11 H -0.247 1.247 12 H -0.288 1.288 13 N -0.673 5.673 14 C 0.056 3.944 15 C -0.116 4.116 16 C -0.113 4.113 17 C -0.134 4.134 18 C 0.112 3.888 19 N -0.588 5.588 20 C 0.538 3.462 21 O -0.452 6.452 22 C -0.141 4.141 23 C -0.143 4.143 24 C 0.539 3.461 25 O -0.455 6.455 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.040 0.960 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.261 0.739 32 H 0.326 0.674 33 H 0.022 0.978 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.183 0.817 44 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.274 12.836 -15.040 29.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.195 4.195 3 C 0.084 3.916 4 H 0.039 0.961 5 C -0.536 4.536 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.536 5.536 9 Si 0.684 3.316 10 H -0.210 1.210 11 H -0.172 1.172 12 H -0.215 1.215 13 N -0.303 5.303 14 C -0.074 4.074 15 C -0.154 4.154 16 C -0.152 4.152 17 C -0.173 4.173 18 C -0.007 4.007 19 N -0.331 5.331 20 C 0.326 3.674 21 O -0.322 6.322 22 C -0.163 4.163 23 C -0.164 4.164 24 C 0.327 3.673 25 O -0.325 6.325 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.143 0.857 33 H 0.040 0.960 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.200 0.800 44 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -21.516 13.068 -14.372 28.987 hybrid contribution -1.102 -0.984 1.019 1.794 sum -22.618 12.084 -13.353 28.912 Atomic orbital electron populations 1.21934 0.98484 1.00143 1.00441 1.22738 0.92868 1.01724 1.02123 1.19551 0.96625 0.88095 0.87327 0.96065 1.21042 0.89213 1.36828 1.06551 0.90223 1.24934 0.94740 0.95143 0.98456 1.69960 1.10335 1.43646 1.29681 0.87428 0.82343 0.77936 0.83889 1.21030 1.17162 1.21456 1.60619 1.34528 1.25370 1.09782 1.22070 0.92286 0.96966 0.96104 1.21562 0.96955 0.98720 0.98158 1.21461 0.98568 0.99428 0.95757 1.21956 0.96869 0.98975 0.99470 1.21863 0.98931 0.98323 0.81602 1.46804 1.41997 1.22811 1.21530 1.19459 0.80915 0.80330 0.86660 1.90833 1.29408 1.47235 1.64766 1.24675 0.95662 1.00237 0.95686 1.24663 0.99166 0.93968 0.98626 1.19451 0.78157 0.85462 0.84200 1.90824 1.43895 1.20852 1.76967 0.93630 0.93599 0.94049 0.92402 0.91773 0.92872 0.85715 0.96034 0.91718 0.91114 0.92514 0.91804 0.91416 0.91113 0.91342 0.88677 0.88550 0.79989 0.80012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.63 37.16 0.32 -2.36 16 2 C -0.16 -3.33 4.37 -26.73 -0.12 -3.44 16 3 C 0.19 4.53 1.75 -68.87 -0.12 4.41 16 4 H 0.02 0.52 6.67 -51.93 -0.35 0.17 16 5 C -0.50 -14.22 9.35 -34.44 -0.32 -14.54 16 6 H 0.08 2.53 8.06 -52.48 -0.42 2.11 16 7 C 0.07 1.99 5.35 -17.82 -0.10 1.89 16 8 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 9 Si 0.86 21.18 25.68 -169.99 -4.37 16.82 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.25 -5.66 5.15 56.52 0.29 -5.37 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 N -0.67 -13.73 6.10 -107.95 -0.66 -14.39 16 14 C 0.06 0.93 5.08 -3.82 -0.02 0.91 16 15 C -0.12 -1.55 5.44 -26.73 -0.15 -1.69 16 16 C -0.11 -1.20 5.21 -26.73 -0.14 -1.34 16 17 C -0.13 -1.30 5.54 -26.73 -0.15 -1.45 16 18 C 0.11 0.96 5.82 -4.04 -0.02 0.94 16 19 N -0.59 -4.99 2.64 -117.53 -0.31 -5.30 16 20 C 0.54 4.44 8.04 -12.39 -0.10 4.34 16 21 O -0.45 -5.22 17.74 5.45 0.10 -5.13 16 22 C -0.14 -0.56 11.15 -36.98 -0.41 -0.97 16 23 C -0.14 -0.56 11.15 -36.98 -0.41 -0.97 16 24 C 0.54 4.38 8.04 -12.39 -0.10 4.28 16 25 O -0.45 -5.14 17.74 5.45 0.10 -5.04 16 26 H 0.04 0.80 8.08 -51.93 -0.42 0.38 16 27 H 0.04 0.73 6.72 -51.93 -0.35 0.38 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 1.23 8.03 -51.93 -0.42 0.81 16 30 H 0.06 1.47 4.10 -51.93 -0.21 1.25 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.33 6.21 7.95 -39.30 -0.31 5.89 16 33 H 0.02 0.35 6.02 -51.93 -0.31 0.03 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.77 8.01 -51.93 -0.42 0.35 16 42 H 0.10 0.79 8.01 -51.93 -0.42 0.37 16 43 H 0.18 0.16 8.06 -52.49 -0.42 -0.26 16 44 H 0.18 0.15 8.06 -52.49 -0.42 -0.28 16 LS Contribution 359.36 15.07 5.42 5.42 Total: -1.00 -34.14 359.36 -7.88 -42.02 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -7.10 Total: 2.62 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -1.83 Total: -9.99 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: -0.20 Total: -46.72 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.19 Total: -10.17 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.37 Total: 16.82 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.14 -7.88 -42.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.903 kcal (2) G-P(sol) polarization free energy of solvation -34.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds