Wall clock time and date at job start Tue Mar 31 2020 06:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47345 * 2 1 4 4 H 1.08999 * 109.47043 * 54.72278 * 3 2 1 5 5 C 1.50691 * 109.47299 * 174.72699 * 3 2 1 6 6 H 1.08008 * 120.00532 * 120.15353 * 5 3 2 7 7 C 1.37884 * 120.00215 * 300.15540 * 5 3 2 8 8 N 1.31510 * 120.00283 * 166.68589 * 7 5 3 9 9 Si 1.86797 * 119.99479 * 346.69480 * 7 5 3 10 10 H 1.48508 * 109.47109 * 264.64913 * 9 7 5 11 11 H 1.48498 * 109.47553 * 24.65025 * 9 7 5 12 12 H 1.48499 * 109.47332 * 144.65206 * 9 7 5 13 13 N 1.46905 * 109.46982 * 294.72505 * 3 2 1 14 14 C 1.46906 * 110.99791 * 101.42146 * 13 3 2 15 15 C 1.53005 * 109.47002 * 183.10980 * 14 13 3 16 16 C 1.52993 * 109.46980 * 179.97438 * 15 14 13 17 17 C 1.53005 * 109.46980 * 179.97438 * 16 15 14 18 18 C 1.53002 * 109.47086 * 179.97438 * 17 16 15 19 19 N 1.46500 * 109.47158 * 180.02562 * 18 17 16 20 20 C 1.34520 * 125.20511 * 269.69943 * 19 18 17 21 21 O 1.21399 * 125.79559 * 359.97337 * 20 19 18 22 22 C 1.47969 * 108.40814 * 179.85277 * 20 19 18 23 23 C 1.34315 * 106.79507 * 0.40785 * 22 20 19 24 24 C 1.34513 * 125.20815 * 90.00089 * 19 18 17 25 25 O 1.21402 * 125.79153 * 359.97438 * 24 19 18 26 26 H 1.09006 * 109.46922 * 306.77771 * 1 2 3 27 27 H 1.09002 * 109.46949 * 66.77756 * 1 2 3 28 28 H 1.08997 * 109.47034 * 186.77785 * 1 2 3 29 29 H 1.09003 * 109.46656 * 240.00510 * 2 1 3 30 30 H 1.08992 * 109.47075 * 120.00313 * 2 1 3 31 31 H 0.97003 * 120.00130 * 179.97438 * 8 7 5 32 32 H 1.00892 * 111.00029 * 337.46799 * 13 3 2 33 33 H 1.09002 * 109.47038 * 303.11017 * 14 13 3 34 34 H 1.09000 * 109.47111 * 63.11142 * 14 13 3 35 35 H 1.08996 * 109.47473 * 300.00318 * 15 14 13 36 36 H 1.09001 * 109.46718 * 59.99703 * 15 14 13 37 37 H 1.09002 * 109.47260 * 300.00159 * 16 15 14 38 38 H 1.09001 * 109.47428 * 60.00395 * 16 15 14 39 39 H 1.08994 * 109.46966 * 300.00018 * 17 16 15 40 40 H 1.09000 * 109.47056 * 60.00386 * 17 16 15 41 41 H 1.09002 * 109.47253 * 300.00220 * 18 17 16 42 42 H 1.09000 * 109.46812 * 60.00293 * 18 17 16 43 43 H 1.07998 * 126.60020 * 180.13309 * 22 20 19 44 44 H 1.07999 * 126.60427 * 179.79994 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6017 1.9828 0.8389 5 6 3.5413 1.4444 0.1306 6 1 4.1501 1.8900 -0.6424 7 6 4.1379 0.8774 1.2368 8 7 5.4316 0.6411 1.2376 9 14 3.1084 0.4447 2.7342 10 1 3.1738 1.5555 3.7177 11 1 1.6981 0.2320 2.3207 12 1 3.6349 -0.7974 3.3548 13 7 1.6572 2.0972 -1.2581 14 6 0.4897 2.9677 -1.0644 15 6 0.0742 3.5701 -2.4081 16 6 -1.1420 4.4761 -2.2064 17 6 -1.5572 5.0790 -3.5500 18 6 -2.7738 5.9846 -3.3485 19 7 -3.1717 6.5613 -4.6351 20 6 -2.7203 7.7253 -5.1360 21 8 -1.9218 8.4666 -4.6006 22 6 -3.3599 7.9471 -6.4517 23 6 -4.1744 6.9014 -6.6686 24 6 -4.0488 6.0109 -5.4937 25 8 -4.6371 4.9613 -5.3321 26 1 -0.3633 0.6153 0.8232 27 1 -0.3633 0.4052 -0.9444 28 1 -0.3633 -1.0205 0.1213 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 5.8514 0.2426 2.0160 32 1 1.4842 1.4162 -1.9821 33 1 -0.3355 2.3835 -0.6573 34 1 0.7449 3.7687 -0.3705 35 1 0.8994 4.1542 -2.8152 36 1 -0.1809 2.7690 -3.1019 37 1 -1.9671 3.8916 -1.7995 38 1 -0.8873 5.2772 -1.5125 39 1 -0.7319 5.6636 -3.9564 40 1 -1.8118 4.2782 -4.2444 41 1 -3.5990 5.3996 -2.9422 42 1 -2.5196 6.7853 -2.6541 43 1 -3.2053 8.7901 -7.1089 44 1 -4.8000 6.7410 -7.5342 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255157039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:56 Heat of formation + Delta-G solvation = -57.427412 kcal Electronic energy + Delta-G solvation = -22853.311658 eV Core-core repulsion = 19384.928069 eV Total energy + Delta-G solvation = -3468.383590 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.22530 -39.75451 -38.83464 -37.41652 -36.87650 -34.95329 -34.05453 -32.63423 -30.49817 -28.88212 -26.34123 -26.15994 -24.27982 -22.88225 -22.56186 -22.29330 -21.50335 -20.87505 -18.76518 -18.49134 -17.58726 -17.32503 -17.03394 -16.77246 -16.25142 -16.13379 -15.70757 -15.15893 -14.98965 -14.95720 -14.87654 -14.82474 -14.37264 -14.33444 -13.64836 -13.49136 -13.24752 -13.01976 -12.89706 -12.62139 -12.41389 -12.16978 -12.13408 -12.03285 -11.82042 -11.63087 -11.49446 -11.33071 -11.26715 -11.17986 -11.05826 -10.75936 -10.53664 -8.91520 -8.26768 -6.24635 -0.91504 1.32670 1.34135 1.37364 1.45845 1.62161 1.72489 2.36147 2.91439 3.06047 3.18018 3.44680 3.79482 3.90852 3.99199 4.13091 4.27447 4.33864 4.34613 4.34895 4.39335 4.47126 4.52268 4.58041 4.63299 4.80110 4.81540 4.82335 4.89563 4.90137 4.99301 5.07780 5.09725 5.17268 5.22929 5.36721 5.44705 5.51396 5.61519 5.73920 6.09204 6.11790 6.52646 6.74720 6.81262 6.85001 7.39219 8.90987 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030475 B = 0.002364 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.576278 B =11841.652182 C =12287.325498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.154 4.154 3 C 0.198 3.802 4 H 0.020 0.980 5 C -0.507 4.507 6 H 0.028 0.972 7 C 0.008 3.992 8 N -0.950 5.950 9 Si 0.926 3.074 10 H -0.283 1.283 11 H -0.214 1.214 12 H -0.287 1.287 13 N -0.691 5.691 14 C 0.058 3.942 15 C -0.107 4.107 16 C -0.106 4.106 17 C -0.124 4.124 18 C 0.110 3.890 19 N -0.598 5.598 20 C 0.530 3.470 21 O -0.493 6.493 22 C -0.125 4.125 23 C -0.123 4.123 24 C 0.532 3.468 25 O -0.491 6.491 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.263 0.737 32 H 0.334 0.666 33 H 0.038 0.962 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.220 0.780 44 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.833 13.070 -15.822 32.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.193 4.193 3 C 0.089 3.911 4 H 0.038 0.962 5 C -0.546 4.546 6 H 0.046 0.954 7 C -0.188 4.188 8 N -0.591 5.591 9 Si 0.751 3.249 10 H -0.210 1.210 11 H -0.136 1.136 12 H -0.213 1.213 13 N -0.321 5.321 14 C -0.072 4.072 15 C -0.145 4.145 16 C -0.144 4.144 17 C -0.163 4.163 18 C -0.010 4.010 19 N -0.340 5.340 20 C 0.321 3.679 21 O -0.366 6.366 22 C -0.146 4.146 23 C -0.144 4.144 24 C 0.323 3.677 25 O -0.364 6.364 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.151 0.849 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.237 0.763 44 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -25.111 13.316 -15.188 32.227 hybrid contribution 0.098 -1.016 1.182 1.561 sum -25.013 12.300 -14.006 31.195 Atomic orbital electron populations 1.21843 0.94854 1.01895 1.01564 1.22585 0.96038 0.99389 1.01274 1.19330 0.93142 0.90000 0.88651 0.96204 1.21365 0.92016 1.35952 1.05271 0.95403 1.25847 0.95937 0.95187 1.01857 1.70122 1.12680 1.45418 1.30833 0.86304 0.82241 0.77423 0.78976 1.21007 1.13636 1.21304 1.60427 1.37159 1.25766 1.08764 1.22109 0.91222 0.96080 0.97749 1.21468 0.97614 0.99090 0.96373 1.21377 0.97629 0.99102 0.96333 1.21809 0.96941 0.98777 0.98742 1.21806 0.98611 0.98296 0.82261 1.46968 1.42220 1.23200 1.21623 1.20248 0.80156 0.79518 0.87956 1.90813 1.31327 1.48338 1.66143 1.24865 0.94702 1.01447 0.93544 1.24871 0.99506 0.92237 0.97813 1.20204 0.77076 0.85331 0.85105 1.90804 1.45192 1.22565 1.77884 0.93188 0.92011 0.91837 0.92892 0.93142 0.92788 0.84856 0.94404 0.92961 0.92584 0.91735 0.90495 0.91250 0.92301 0.91741 0.88087 0.88469 0.76328 0.76221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 8.63 71.98 0.62 -3.88 16 2 C -0.15 -6.29 4.37 30.59 0.13 -6.15 16 3 C 0.20 9.23 1.75 44.16 0.08 9.30 16 4 H 0.02 0.94 6.67 -2.39 -0.02 0.93 16 5 C -0.51 -29.94 9.35 25.60 0.24 -29.70 16 6 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 7 C 0.01 0.49 5.35 84.66 0.45 0.94 16 8 N -0.95 -61.00 13.96 21.45 0.30 -60.70 16 9 Si 0.93 43.91 25.68 68.60 1.76 45.67 16 10 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 11 H -0.21 -8.92 5.15 99.48 0.51 -8.41 16 12 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 13 N -0.69 -27.98 6.10 -495.43 -3.02 -31.00 16 14 C 0.06 1.84 5.08 86.30 0.44 2.28 16 15 C -0.11 -2.75 5.44 30.59 0.17 -2.59 16 16 C -0.11 -2.10 5.21 30.59 0.16 -1.94 16 17 C -0.12 -2.32 5.54 30.60 0.17 -2.15 16 18 C 0.11 1.83 5.82 86.38 0.50 2.33 16 19 N -0.60 -9.61 2.64 -762.72 -2.02 -11.62 16 20 C 0.53 8.16 8.04 86.86 0.70 8.86 16 21 O -0.49 -11.32 17.74 -3.40 -0.06 -11.38 16 22 C -0.12 -0.61 11.15 23.96 0.27 -0.34 16 23 C -0.12 -0.56 11.15 23.95 0.27 -0.30 16 24 C 0.53 7.84 8.04 86.86 0.70 8.53 16 25 O -0.49 -10.61 17.74 -3.41 -0.06 -10.67 16 26 H 0.05 1.52 8.08 -2.38 -0.02 1.51 16 27 H 0.06 1.73 6.72 -2.39 -0.02 1.71 16 28 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.05 2.19 8.03 -2.39 -0.02 2.17 16 30 H 0.05 2.18 4.10 -2.39 -0.01 2.17 16 31 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 32 H 0.33 12.48 7.95 -89.70 -0.71 11.77 16 33 H 0.04 1.11 6.02 -2.39 -0.01 1.09 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.10 1.54 8.01 -2.39 -0.02 1.52 16 42 H 0.10 1.57 8.01 -2.39 -0.02 1.55 16 43 H 0.22 -0.58 8.06 -2.91 -0.02 -0.60 16 44 H 0.22 -0.69 8.06 -2.91 -0.02 -0.72 16 Total: -1.00 -78.47 359.36 1.88 -76.59 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.08 Total: 17.89 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 4.89 Total: -14.79 kcal Atomic # 7 Polarization: -98.58 SS G_CDS: -4.74 Total: -103.32 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.12 Total: -22.05 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.76 Total: 45.67 kcal Total: -78.47 1.88 -76.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.167 kcal (2) G-P(sol) polarization free energy of solvation -78.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds